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Identification

Personal identification

Full name
Mark Ravinet

Citation names

  • Ravinet, Mark

Author identifiers

Ciência ID
E51A-AF29-F5D4
ORCID iD
0000-0002-2841-1798

Addresses

  • University Park, NG7 2RD, Nottingham, Nottinghamshire, United Kingdom (Professional)
  • Blindervein 31, 1066, Oslo, Oslo, Norway (Professional)

Websites

  • markravinet.github.io (Professional)

Knowledge fields

  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
English (Mother tongue)
Norwegian Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1) Elementary (A2)
Japanese Intermediate (B1) Elementary (A2) Elementary (A2) Intermediate (B1) Beginner (A1)
Education
Degree Classification
2008/10/01 - 2011/12/12
Concluded
 The evolutionary biology of the three-spined stickleback in Ireland (Doktor (PhD))
Queen's University Belfast School of Biological Sciences, United Kingdom
2007/09/15 - 2008/07/01
Concluded
 MSc Freshwater and Coastal Sciences (Master)
Queen Mary University of London, United Kingdom
 Distinction
2004/09/25 - 2007/06/20
Concluded
 Physical Geography (Bachelor)
University College London Department of Geography, United Kingdom
 Upper Second Class
Affiliation

Science

Category
Host institution 		Employer
2023/09/15 - Current Principal Investigator (Research) Universitetet i Oslo, Norway
2019/12/01 - 2023/09/15 Principal Investigator (Research) University of Nottingham, United Kingdom
University of Nottingham, United Kingdom
2015/11/20 - 2019/11/30 Researcher (Research) Universitetet i Oslo Institutt for biovitenskap, Norway
Universitetet i Oslo Institutt for biovitenskap, Norway
2014/01/06 - 2015/11/06 Postdoc (Research) Kokuritsu Idengaku Kenkyujo, Japan
Kokuritsu Idengaku Kenkyujo, Japan
2013/04/25 - 2013/12/10 Postdoc (Research) Göteborgs Universitet, Sweden
Göteborgs Universitet, Sweden
2012/10/01 - 2013/04/10 Postdoc (Research) Queen's University Belfast School of Biological Sciences, United Kingdom
Queen's University Belfast School of Biological Sciences, United Kingdom
2012/02/20 - 2012/09/20 Postdoc (Research) Kokuritsu Idengaku Kenkyujo, Japan
Kokuritsu Idengaku Kenkyujo, Japan
Projects

Grant

Designation Funders
2021/09/25 - 2025/08/31 The evolutionary causes and consequences of human-commensalism in Eurasian Passer sparrows
314866
Co-Principal Investigator (Co-PI)
Universitetet i Oslo, Norway
Ongoing
2024/03/01 - 2024/12/01 How does anthropogenic change in Arctic environments shape evolutionary change and biodiversity?
240046-591
Universitetet i Oslo, Norway
Ongoing
2022/10/01 - 2023/03/31 Using avian comparative genomics to investigate adaptation to extreme arid environments
0000
Principal investigator
University of Nottingham School of Biosciences, United Kingdom
 Biotechnology and Biological Sciences Research Council
Concluded
2018/09/01 - 2019/11/30 The evolutionary causes and consequences of human-commensalism in Passer sparrows
748299
Post-doc Fellow
Universitetet i Oslo, Norway
 European Commission
Concluded
2014/01/06 - 2015/11/06 Ecological speciation genomics in threespined sticklebacks
P13381
Post-doc Fellow
Japan Society for the Promotion of Science London
Concluded
Outputs

Publications

Book
  1. Ravinet, Mark. Evolutionary Genetics: Concepts, analysis, practice. Oxford, United Kingdom: Oxford University Press. 2019.
    Published
Journal article
  1. Marvin Choquet; Apollo M. Lizano; Alan Le Moan; Mark Ravinet; Anusha K. S. Dhanasiri; Galice Hoarau. "Unmasking microsatellite deceptiveness and debunking hybridization with SNPs in four marine copepod species of Calanus". Molecular Ecology (2023): https://doi.org/10.1111/mec.17183.
    10.1111/mec.17183
  2. Vilde Bruhn Kinneberg; Dabao Sun Lü; David Peris; Mark Ravinet; Inger Skrede. "Introgression between highly divergent fungal sister species". Journal of Evolutionary Biology (2023): https://doi.org/10.1111/jeb.14190.
    10.1111/jeb.14190
  3. Eva L. Koch; Mark Ravinet; Anja M. Westram; Kerstin Johannesson; Roger K. Butlin. "Genetic architecture of repeated phenotypic divergence in Littorina saxatilis ecotype evolution". Evolution (2022): https://doi.org/10.1111/evo.14602.
    10.1111/evo.14602
  4. Homa Papoli Yazdi; Mark Ravinet; Melissah Rowe; Glenn-Peter Sætre; Caroline Ø. Guldvog; Fabrice Eroukhmanoff; Alfonso Marzal; Sergio Magallanes; Anna Runemark. "Extensive transgressive gene expression in testis but not ovary in the homoploid hybrid Italian sparrow". Molecular Ecology (2022): https://doi.org/10.1111/mec.16572.
    10.1111/mec.16572
  5. Angélica Cuevas; Alex Buerkle; Fabrice Eroukhmanoff; Mark Ravinet; Glenn-Peter Sætre; Anna Runemark. "Predictors of genomic differentiation within a hybrid taxon". PLOS Genetics (2022): https://doi.org/10.1371/journal.pgen.1010027.
    10.1371/journal.pgen.1010027
  6. Will Sowersby; José Cerca; Bob B. M. Wong; Topi K. Lehtonen; David G. Chapple; Mariana Leal-Cardín; Marta Barluenga; Mark Ravinet. "Pervasive admixture and the spread of a large-lipped form in a cichlid fish radiation". Molecular Ecology (2021): https://doi.org/10.1111/mec.16139.
    10.1111/mec.16139
  7. Sean Stankowski; Mark Ravinet. "Defining the speciation continuum". Evolution (2021): https://doi.org/10.1111/evo.14215.
    10.1111/evo.14215
  8. Angélica Cuevas; Mark Ravinet; Glenn-Peter Sætre; Fabrice Eroukhmanoff. "Intraspecific genomic variation and local adaptation in a young hybrid species". Molecular Ecology (2021): https://doi.org/10.1111/mec.15760.
    10.1111/mec.15760
  9. Mark Ravinet; Manabu Kume; Asano Ishikawa; Jun Kitano. "Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats". Journal of Evolutionary Biology (2021): https://doi.org/10.1111/jeb.13664.
    10.1111/jeb.13664
  10. Giada Ferrari; Judith Neukamm; Helle T. Baalsrud; Abagail M. Breidenstein; Mark Ravinet; Carina Phillips; Frank Rühli; Abigail Bouwman; Verena J. Schuenemann. "Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox". Philosophical Transactions of the Royal Society B: Biological Sciences 375 1812 (2020): 20190572-20190572. https://doi.org/10.1098/rstb.2019.0572.
    10.1098/rstb.2019.0572
  11. Rui Faria; Pragya Chaube; Hernán E. Morales; Tomas Larsson; Alan R. Lemmon; Emily M. Lemmon; Marina Rafajlovic; et al. "Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes". Molecular Ecology 28 6 (2019): 1375-1393. https://doi.org/10.1111/mec.14972.
    10.1111/mec.14972
  12. Mark Ravinet; Tore Oldeide Elgvin; Cassandra Trier; Mansour Aliabadian; Andrey Gavrilov; Glenn-Peter Sætre. "Signatures of human-commensalism in the house sparrow genome". Proceedings of the Royal Society B: Biological Sciences 285 1884 (2018): 20181246-20181246. https://doi.org/10.1098/rspb.2018.1246.
    10.1098/rspb.2018.1246
  13. Mark Ravinet. "Notes from a snail island: Littorinid evolution and adaptation". Molecular Ecology 27 13 (2018): 2781-2789. https://doi.org/10.1111/mec.14730.
    10.1111/mec.14730
  14. Westram, Anja M.; Rafajlovic, Marina; Chaube, Pragya; Faria, Rui; Larsson, Tomas; Panova, Marina; Ravinet, Mark; et al. "Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow". Evolution Letters 2 4 (2018): 297-309. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000446774400004&KeyUID=WOS:000446774400004.
    10.1002/evl3.74
  15. M. Ravinet; R. Faria; R. K. Butlin; J. Galindo; N. Bierne; M. Rafajlovic; M. A. F. Noor; B. Mehlig; A. M. Westram. "Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow". Journal of Evolutionary Biology 30 8 (2017): 1450-1477. https://doi.org/10.1111%2Fjeb.13047.
    10.1111/jeb.13047
  16. A. M. Westram; M. Ravinet. "Land ahoy? Navigating the genomic landscape of speciation while avoiding shipwreck". Journal of Evolutionary Biology 30 8 (2017): 1522-1525. https://doi.org/10.1111%2Fjeb.13129.
    10.1111/jeb.13129
  17. Tore O. Elgvin; Cassandra N. Trier; Ole K. Tørresen; Ingerid J. Hagen; Sigbjørn Lien; Alexander J. Nederbragt; Mark Ravinet; Henrik Jensen; Glenn-Peter Sætre. "The genomic mosaicism of hybrid speciation". Science Advances 3 6 (2017): e1602996-e1602996. https://doi.org/10.1126%2Fsciadv.1602996.
    10.1126/sciadv.1602996
  18. Yoel E. Stuart; Thor Veen; Jesse N. Weber; Dieta Hanson; Mark Ravinet; Brian K. Lohman; Cole J. Thompson; et al. "Contrasting effects of environment and genetics generate a continuum of parallel evolution". Nature Ecology & Evolution 1 6 (2017): 0158-0158. https://doi.org/10.1038%2Fs41559-017-0158.
    10.1038/s41559-017-0158
  19. Asano Ishikawa; Makoto Kusakabe; Kohta Yoshida; Mark Ravinet; Takashi Makino; Atsushi Toyoda; Asao Fujiyama; Jun Kitano. "Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes". Evolution 71 3 (2017): 565-581. https://doi.org/10.1111%2Fevo.13175.
    10.1111/evo.13175
  20. Toby Fountain; Mark Ravinet; Richard Naylor; Klaus Reinhardt; Roger K. Butlin. "A Linkage Map and QTL Analysis for Pyrethroid Resistance in the Bed Bug Cimex lectularius". G3: Genes|Genomes|Genetics 6 12 (2016): 4059-4066. https://doi.org/10.1534/g3.116.033092.
    10.1534/g3.116.033092
  21. Makoto Kusakabe; Asano Ishikawa; Mark Ravinet; Kohta Yoshida; Takashi Makino; Atsushi Toyoda; Asao Fujiyama; Jun Kitano. "Genetic basis for variation in salinity tolerance between stickleback ecotypes". Molecular Ecology 26 1 (2016): 304-319. https://doi.org/10.1111%2Fmec.13875.
    10.1111/mec.13875
  22. Ravinet, M.; Ishikawa, A.; Kitano, J.. "Trophic niche differentiation and phenotypic divergence among cryptic species of Japanese ninespine sticklebacks". Evolutionary Ecology Research 17 4 (2016): 505-523. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978734597&partnerID=MN8TOARS.
  23. Ravinet, M.; Westram, A.; Johannesson, K.; Butlin, R.; André, C.; Panova, M.. "Shared and nonshared genomic divergence in parallel ecotypes of Littorina saxatilis at a local scale". Molecular Ecology 25 1 (2016): 287-305. http://www.scopus.com/inward/record.url?eid=2-s2.0-84954077915&partnerID=MN8TOARS.
    10.1111/mec.13332
  24. Ravinet, M.; Hynes, R.; Poole, R.; Cross, T.F.; McGinnity, P.; Harrod, C.; Prodöhl, P.A.. "Where the lake meets the sea: Strong reproductive isolation is associated with adaptive divergence between lake resident and anadromous three-spined sticklebacks". PLoS ONE 10 4 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84929493846&partnerID=MN8TOARS.
    10.1371/journal.pone.0122825
  25. Ravinet, M.; Takeuchi, N.; Kume, M.; Mori, S.; Kitano, J.. "Comparative analysis of Japanese three-spined stickleback clades reveals the Pacific Ocean lineage has adapted to freshwater environments while the Japan Sea has not". PLoS ONE 9 12 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84914703531&partnerID=MN8TOARS.
    10.1371/journal.pone.0112404
  26. Kawajiri, M.; Yoshida, K.; Fujimoto, S.; Mokodongan, D.F.; Ravinet, M.; Kirkpatrick, M.; Yamahira, K.; Kitano, J.. "Ontogenetic stage-specific quantitative trait loci contribute to divergence in developmental trajectories of sexually dimorphic fins between medaka populations". Molecular Ecology 23 21 (2014): 5258-5275. http://www.scopus.com/inward/record.url?eid=2-s2.0-84911374219&partnerID=MN8TOARS.
    10.1111/mec.12933
  27. Ravinet, M.; Harrod, C.; Eizaguirre, C.; Prodöhl, P.A.. "Unique mitochondrial DNA lineages in Irish stickleback populations: Cryptic refugium or rapid recolonization?". Ecology and Evolution 4 12 (2014): 2488-2504. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902449135&partnerID=MN8TOARS.
    10.1002/ece3.853
  28. Cassidy, L.M.; Ravinet, M.; Mori, S.; Kitano, J.. "Are Japanese freshwater populations of threespine stickleback derived from the Pacific Ocean lineage?". Evolutionary Ecology Research 15 3 (2013): 295-311. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879640413&partnerID=MN8TOARS.
  29. Ravinet, M.; Prodöhl, P.A.; Harrod, C.. "On Irish stickleback: Morphological diversification in a secondary contact zone". Evolutionary Ecology Research 15 3 (2013): 271-294. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879649742&partnerID=MN8TOARS.
  30. Ravinet, M.; Prodöhl, P.A.; Harrod, C.. "Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment". Journal of Evolutionary Biology 26 1 (2013): 186-204. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871157927&partnerID=MN8TOARS.
    10.1111/jeb.12049
  31. Ravinet, M.; Syväranta, J.; Jones, R.I.; Grey, J.. "A trophic pathway from biogenic methane supports fish biomass in a temperate lake ecosystem". Oikos 119 2 (2010): 409-416. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952936503&partnerID=MN8TOARS.
    10.1111/j.1600-0706.2009.17859.x
Preprint
  1. Vilde Bruhn Kinneberg; Dabao Sun Lü; David Peris; Mark Ravinet; Inger Skrede. "Introgression between highly divergent fungal sister species". 2022. https://doi.org/10.1101/2022.08.26.505392.
    10.1101/2022.08.26.505392

Other

Other output
  1. Predictors of genomic differentiation within a hybrid taxon. 2021. Angelica Cuevas; Fabrice Eroukhmanoff; Mark Ravinet; Glenn-Peter Særtre; Anna Runemark. https://doi.org/10.1101/2021.04.11.439335.
    10.1101/2021.04.11.439335
  2. Intraspecific genomic variation and local adaptation in a young hybrid species. 2019. Angélica Cuevas; Mark Ravinet; Glenn-Peter Sætre; Fabrice Eroukhmanoff. https://doi.org/10.1101/732313.
    10.1101/732313
  3. The genomic landscape at a late stage of stickleback speciation: high genomic divergence interspersed by small localized regions of introgression. 2017. Mark Ravinet; Kohta Yoshida; Shuji Shigenobu; Atsushi Toyoda; Asao Fujiyama; Jun Kitano. https://doi.org/10.1101%2F190629.
    10.1101/190629
  4. Variation and constraints in hybrid genome formation. 2017. Anna Runemark; Cassandra N Trier; Fabrice Eroukhmanoff; Jo S Hermansen; Michael Matschiner; Mark Ravinet; Tore O Elgvin; Glenn-Peter Saetre. https://doi.org/10.1101%2F107508.
    10.1101/107508