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Abel J. P. Gomes is a Full Professor at Universidade da Beira Interior (UBI). He is a member of IEEE, ACM, ACM/SIGGRAPH, and Eurographics. He was General Co-chair of the 37th Annual Conference of the European Association for Computer Graphics (Eurographics'2016), Lisbon, Portugal, 2016, as well as Program Co-chair of the 2018 Shape Modeling International (SMI'16) Conference, Lisbon, Portugal, 2018. He is Associate Editor of the Computers & Graphics journal (Elsevier) and also of the International Journal of Computer Games Technology (Hindawi/Wiley). He has (co)authored more than 100 in peer-reviewed international publications. As a supervisor, he completed sixteen PhDs. Currently he is supervising two PhDs: (1) surface reconstruction from 3D point clouds through deep learning; (2) breast cancer medical imaging through deep learning. Therefore, his current research fields are geometric computing, computer graphics, medical imaging, and, more recently, virtual reality.
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Identification

Personal identification

Full name
Abel João Padrão Gomes

Citation names

  • Abel Gomes
  • Abel J.P. Gomes

Author identifiers

Ciência ID
EC1D-4ACD-6A62
ORCID iD
0000-0002-5804-5717
Google Scholar ID
https://scholar.google.com/citations?user=zkNz_nMAAAAJ&hl=en
Researcher Id
H-9602-2014
Scopus Author Id
8325080300

Email addresses

  • ajpgomes@ubi.pt (Professional)
  • agomes@di.ubi.pt (Professional)
  • mosqueteer@gmail.com (Personal)

Telephones

Mobile phone
  • 962208439 (Personal)

Addresses

  • Universidade da Beira Interior, Departamento de Informática, Rua Marquês d'Ávila e Bolama, 6200-001, Covilhã, Covilhã, Portugal (Professional)

Websites

Knowledge fields

  • Exact Sciences - Computer and Information Sciences - Computer Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Proficiency (C2) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2013/07/09 - 2013/07/10
Concluded
 Engenharia Informática e de Computadores (Título de Agregado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Computação Geométrica. Relatório da Unidade Curricular das Provas de Agregação em Engenharia Informática e de Computadores" (THESIS/DISSERTATION)
2007 - 2007
Concluded
 Engenharia Informática (Doutoramento)
Major in Sem especialidade
Universidade da Beira Interior, Portugal
"Shape Theory and Mathematical Design of a General Kernel Through Regular Stratified Objects" (THESIS/DISSERTATION)
1996/02/15 - 2000/12/15
Concluded
 PhD in Information Systems and Computing (Doctor of Philosophy)
Brunel University Department of Computer Science, United Kingdom
"Shape Theory and Mathematical Design of a General Kernel Through Regular Stratified Objects" (THESIS/DISSERTATION)
1981/09/15 - 1987/10/15
Concluded
 Engenharia Eletrotécnica e de Computadores (Mestrado integrado)
Universidade de Coimbra, Portugal
Affiliation

Science

Category
Host institution 		Employer
2022/01/01 - 2023/12/31 Researcher (Research) Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
2002/05/15 - 2020/12/31 Researcher (Research) Instituto de Telecomunicações, Portugal
Instituto de Telecomunicações, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2024/02/19 - Current Full Professor (University Teacher) Universidade da Beira Interior, Portugal
Universidade da Beira Interior Departamento de Informática, Portugal
2006/08/31 - 2024/02/18 Associate Professor (University Teacher) Universidade da Beira Interior Departamento de Informática, Portugal
Universidade da Beira Interior Departamento de Informática, Portugal
2001/01/30 - 2006/08/30 Assistant Professor (University Teacher) Universidade da Beira Interior Departamento de Informática, Portugal
Universidade da Beira Interior Departamento de Informática, Portugal
1999/09/27 - 2001/01/29 Assistant (University Teacher) Universidade da Beira Interior Departamento de Informática, Portugal
Universidade da Beira Interior Departamento de Informática, Portugal
1987/12/02 - 1999/09/26 Assistant (University Teacher) Universidade de Coimbra Departamento de Matemática, Portugal
Universidade de Coimbra Departamento de Matemática, Portugal

Positions / Appointments

Category
Host institution 		Employer
2019/04/30 - 2021/11/05 Member of General Council Universidade da Beira Interior, Portugal
Universidade da Beira Interior, Portugal
2017/11/06 - 2021/11/05 President of the School Board Universidade da Beira Interior Faculdade de Engenharia, Portugal
Universidade da Beira Interior Faculdade de Engenharia, Portugal
2009/11/06 - 2013/11/05 President of the Department of Computer Science and Engineering Universidade da Beira Interior, Portugal
Universidade da Beira Interior, Portugal
2008/11/06 - 2013/11/05 Member of General Council Universidade da Beira Interior, Portugal
Universidade da Beira Interior, Portugal
2002/11/06 - 2013/11/05 Member of Scientific Council Universidade da Beira Interior Faculdade de Engenharia, Portugal
Universidade da Beira Interior Faculdade de Engenharia, Portugal
2002/11/06 - 2004/11/05 President of the Department of Computer Science and Engineering Universidade da Beira Interior Departamento de Informática, Portugal
Universidade da Beira Interior Departamento de Informática, Portugal
Projects

Contract

Designation Funders
2024/02/01 - 2028/01/31 QUANTUM-TOX - Revolutionizing Computational Toxicology with Electronic Structure Descriptors and Artificial Intelligence
101130724
Co-Principal Investigator (Co-PI)
FastComptChem Ltd, Portugal

Universidade da Beira Interior, Portugal

The University of Manchester, United Kingdom

Liverpool John Moores University, United Kingdom

Istituto di Ricerche Farmacologiche Mario Negri, Italy
European Innovation Council
Ongoing
2021/07/01 - 2023/06/30 miraASSETS - Structural Management System of Industrial Assets
CENTRO-01-0247-FEDER-113462
Principal investigator
Universidade da Beira Interior, Portugal

VESAM Engenharia S.A., Portugal

Mira Systems, Portugal
Agência Nacional de Inovação SA
Ongoing
2015/07/01 - 2016/06/30 Algorithms for Macro-Molecular Pocket Detection
UTAP-EXPL/QEQ-COM/0019/2014
Researcher
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal

Instituto de Telecomunicações, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/01 - 2011/12/31 MOGGY - Browser-Based Massive Multiplayer Online Game Engine Architecture
PTDC/EIA/70830/2006
Principal investigator
Instituto de Telecomunicações, Portugal

IT - Coimbra, Portugal

Universidade da Beira Interior, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/01 - 2010/07/31 DEFORMIX - A Geometric Kernel for Deformable Implicit Surfaces and its Applications to Computer Games, Animation and Virtual Reality
PTDC/EIA/70750/2006
Principal investigator
Universidade da Beira Interior, Portugal

Instituto Politécnico de Viseu Escola Superior de Tecnologia e Gestão de Viseu, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2005/03/01 - 2007/12/31 STEINER - Geometric Engine of Inhomogeneous Implicit Surfaces With Singularities
POSC/EIA/63046/2004
Principal investigator
Universidade da Beira Interior, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book
  1. Gomes, Abel. Implicit Curves and Surfaces: Mathematics, Data Structures and Algorithms. Springer-Verlag. 2009.
    10.1007/978-1-84882-406-5
Book chapter
  1. Q. T. Nguyen; A. J. P. Gomes; F. N. Ferreira. "Computational Efficiency Improvement for Analyzing Bending and Tensile Behavior of Woven Fabric Using Strain Smoothing Method". 138-148. Springer International Publishing, 2018.
    10.1007/978-3-319-95162-1_10
Conference paper
  1. Muranho, João; Ferreira, Ana; Gomes, Abel; Sousa, J.; Marques, Alfeu Sá. "Calibration in Water Distribution Networks with Pressure-Driven Analysis". 2019.
  2. Nguyen, Q.T.; Gomes, A.J.P.. "Healed marching cubes algorithm for non-manifold implicit surfaces". 2017.
    10.1109/EPCGI.2016.7851184
  3. Pereira, Tiago; Pereira, Orlando; Fazendeiro, Paulo; Gomes, Abel; Pereira, T.; Pereira, O.; Fazendeiro, P.; Gomes, A.. "A gyro-enhanced smart-phone framework to develop motion-based user interfaces for animation and virtual environments". 2016.
    10.1109/EPCGI.2016.7851199
  4. Gobena, D.L.; Gomes, A.; Ejigu, D.. "UI delegation: The 3rd dimension for cross-platform user interfaces". 2015.
  5. Muranho, J.; Ferreira, A.; Sousa, J.; Gomes, A.; Sá Marques, A.. "Pressure-dependent demand and leakage modelling with an EPANET extension - WaterNetGen". 2014.
    10.1016/j.proeng.2014.11.488
  6. Ribeiro, M.G.; Gomes, A.J.P.. "A skillet-based recoloring algorithm for dichromats". 2013.
    10.1109/HealthCom.2013.6720766
  7. Dias, S.; Gomes, A.. "Triangulating molecular surfaces on multiple GPUs". 2013.
    10.1145/2488551.2488582
  8. Nguyen-Trong, Quyen; Ferreira, Fernando; Gomes, Abel. "Modelling the bending behaviour of plain-woven fabric using flat shell element and strain smoothing technique". 2013.
  9. Amador, G.; Gomes, A.. "TouchAll: A multi-touch, gestures, and fiducials API for Flash ActionScript 3.0". 2011.
    10.1109/MUE.2011.21
  10. Muranho, J.; Ferreira, A.; Sousa, J.; Gomes, A.; Marques, A.S.. "Waternetgen - An EPANET based tool for water distribution network synthetic models generation and sizing". 2011.
  11. Dias, S.; Gomes, A.. "GPU-based triangulation of the van der Waals surface". 2010.
    10.1109/BIBM.2010.5706650
  12. Gomes, A.; Dias, S.; Morgado, J.. "Polygonization of non-homogeneous non-manifold implicit surfaces with tentative topological guarantees". 2010.
    10.1109/CEC.2010.5586012
  13. Dias, S.; Bora, K.; Gomes, A.. "CUDA-based triangulations of convolution molecular surfaces". 2010.
    10.1145/1851476.1851553
  14. Rodrigues, J.; Gomes, A.; Vaidya, B.; Lorenz, P.. "The First International Workshop on Networking and Games (N&G 2010): Welcome message from workshop organizers". 2010.
    10.1109/WAINA.2010.242
  15. Pereira, O.R.E.; Rodrigues, J.J.P.C.; Gomes, A.J.P.. "Contributions of sensor networks to improve gaming experience". 2010.
    10.1109/WAINA.2010.185
  16. Amador, G.; Gomes, A.. "CUDA-based linear solvers for stable fluids". 2010.
    10.1109/ICISA.2010.5480268
  17. Raposo, A.N.; Queiroz, J.A.; Gomes, A.J.P.. "Triangulation of molecular surfaces using an isosurface continuation algorithm". 2009.
    10.1109/ICCSA.2009.16
  18. Alexandre, R.; Prata, P.; Gomes, A.. "A grid infrastructure for online games". 2009.
    10.1145/1655925.1656046
  19. Silva, F.G.M.; Gomes, A.J.P.. "Interactive editing of multiresolution meshes". 2004.
    10.1109/SIBGRA.2004.1352962
  20. Silva, F.G.M.; Gomes, A.J.P.. "Normal-based simplification algorithm for meshes". 2004.
    10.1109/TPCG.2004.1314473
  21. Silva, F.G.M.; Gomes, A.J.P.. "Adjacency and incidence framework - A data structure for efficient and fast management of multiresolution meshes". 2003.
    10.1145/604471.604503
  22. Silva, F.G.M.; Gomes, A.J.P.. "Interactive editing of arbitrary sub-meshes". 2003.
    10.1109/CGI.2003.1214469
  23. Middleditch, A.E.; Peade, C.M.; Gomes, A.J.. "A representation independent geometric modeling kernel". 2000.
    10.1109/GMAP.2000.838240
Journal article
  1. Macro S. V. M. Grinet; Ana I. R. Gouveia; Abel J. P. Gomes. "Machine learning in breast cancer imaging: a review on data, models and methods". Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization (2024): https://doi.org/10.1080/21681163.2024.2302387.
    10.1080/21681163.2024.2302387
  2. Ribeiro, Madalena; Gomes, Abel. "RGBeat: A Recoloring Algorithm for Deutan and Protan Dichromats". International Journal of Interactive Multimedia and Artificial Intelligence 8 2 (2023): 47. http://dx.doi.org/10.9781/ijimai.2022.01.003.
    10.9781/ijimai.2022.01.003
  3. Quyen, Nguyen T.; Quoc, Nguyen Trong; Tru, Nguyen Dinh; Gomes, Abel J.P.; Ferreira, Fernando B.N.. "A Node-Based Strain Smoothing Technique for Free Vibration Analysis of Textile-Like Sheet Materials". Solid State Phenomena 333 (2022): 219-225. http://dx.doi.org/10.4028/p-76scj1.
    10.4028/p-76scj1
  4. Quyen, Nguyen T.; Quoc, Nguyen Trong; Tru, Nguyen Dinh; Gomes, Abel J.P.; Ferreira, Fernando B.N.. "An Alpha Finite Element Method for Linear Static and Buckling Analysis of Textile-Like Sheet Materials". Solid State Phenomena 333 (2022): 211-217. http://dx.doi.org/10.4028/p-1415q2.
    10.4028/p-1415q2
  5. Goncalo N. P. Amador; Abel J. P. Gomes. "Bounded-Search Pathfinders Based on Influence Maps Generated by Attractors and Repulsors". IEEE Transactions on Games 13 1 (2021): 35-49. https://doi.org/10.1109/TG.2019.2937780.
    10.1109/TG.2019.2937780
  6. T. Quyê`n, Nguyê~n; Dourado, N.; J. P. Gomes, A.; B. N. Ferreira, F.. "A Cell-Based Smoothed Finite Element Method for Modal Analysis of Non-Woven Fabrics". Computers, Materials & Continua 67 3 (2021): 2765-2795. http://dx.doi.org/10.32604/cmc.2021.013164.
    10.32604/cmc.2021.013164
  7. Sérgio Dias; Manuela Helmer-Citterich; Tiago Simões; Francisco Fernandes; Ana Mafalda Martins; Alfredo Ferreira; Joaquim Jorge; Abel J. P. Gomes. "CavBench: A benchmark for protein cavity detection methods". PLOS ONE (2019): https://doi.org/10.1371/journal.pone.0223596.
    10.1371/journal.pone.0223596
  8. Maria Madalena Gonçalves Ribeiro; Abel Gomes. "Recoloring Algorithms for Colorblind People: a Survey". ACM Computing Surveys 52 4 (2019): 1-37. http://www.it.pt/Publications/PaperJournal/29495.
    10.1145/3329118
  9. Tiago M. C. Simões; Abel J. P. Gomes. "CavVis—A Field-of-View Geometric Algorithm for Protein Cavity Detection". Journal of Chemical Information and Modeling (2019): https://doi.org/10.1021/acs.jcim.8b00572.
    10.1021/acs.jcim.8b00572
  10. Ribeiro, Madalena; Gomes, Abel. "Contour Enhancement Algorithm for Improving Visual Perception of Deutan and Protan Dichromats". (2019): http://hdl.handle.net/10400.6/8293.
    10.9781/ijimai.2019.05.003
  11. Rodrigues, R.S.V.; Morgado, J.F.M.; Gomes, A.J.P.. "Part-Based Mesh Segmentation: A Survey". Computer Graphics Forum (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85041187429&partnerID=MN8TOARS.
    10.1111/cgf.13323
  12. Gonçalo P. Amador; Abel J. P. Gomes. "xTrek: An Influence-Aware Technique for Dijkstra and A* Pathfinders". International Journal of Computer Games Technology (2018): https://doi.org/10.1155/2018/5184605.
    10.1155/2018/5184605
  13. Gomes, Abel; Hahmann, Stefanie; Kalogerakis, Evangelos. "Foreword to the Special Issue on Shape Modeling International 2018". (2018): http://hdl.handle.net/10400.6/8297.
    10.1016/j.cag.2018.05.022
  14. Gomes, Abel. "A User Trust System for Online Games -- Part II: A Subjective Logic Approach for Trust Inference". IEEE Transactions on Computational Intelligence and AI in Games (2017): http://www.it.pt/Publications/PaperJournal/19032.
    10.1109/TCIAIG.2016.2593000
  15. Tiago Miguel Carrola Simões; Daniel Simões Lopes; Sérgio Emanuel Duarte Dias; Francisco Fernandes; João Antonio Madeiras Pereira; Joaquim Armando Jorge; Chandrajit Bajaj; Abel Gomes. "Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey". Computer Graphics Forum, The Eurographics Association and Blackwell Publishing Ltd. 36 8 (2017): 643-683. http://www.it.pt/Publications/PaperJournal/24753.
    10.1111/cgf.13158
  16. Sérgio E. D. Dias; Ana Mafalda Martins; Quoc T. Nguyen; Abel J. P. Gomes. "GPU-based detection of protein cavities using Gaussian surfaces". BMC Bioinformatics (2017): https://doi.org/10.1186/s12859-017-1913-4.
    10.1186/s12859-017-1913-4
  17. Gomes, Abel. "A User Trust System for Online Games – Part I: An Activity Theory Approach for Trust Representation". IEEE Transactions on Computational Intelligence and AI in Games (2017): http://www.it.pt/Publications/PaperJournal/19033.
    10.1109/TCIAIG.2016.2592965
  18. Sérgio Emanuel Duarte Dias; Quoc Trong Nguyen; Joaquim Armando Jorge; Abel Gomes. "Multi-GPU-based detection of protein cavities using critical points". Future Generation Computer Systems 67 2017 (2017): 430-440. http://www.it.pt/Publications/PaperJournal/20296.
    10.1016/j.future.2016.07.009
  19. Dias, Sérgio; Martins, Ana Mafalda; Nguyen, Quoc; Gomes, Abel. "GPU-Based Detection of Protein Cavities using Gaussian Surfaces". (2017): http://hdl.handle.net/10400.6/8304.
    10.1186/s12859-017-1913-4
  20. Simões, Tiago M. C.; Lopes, Daniel Simões; Dias, Sérgio; Fernandes, Francisco; Jorge, Joaquim A; Pereira, João; Bajaj, Chandrajit; Gomes, Abel. "Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey". (2017): http://hdl.handle.net/10400.6/8303.
    10.1111/cgf.13158
  21. Cardoso, Rui Costa; Freire, Mario; Gomes, Abel. "A User Trust System for Online Games: Part I". (2017): http://hdl.handle.net/10400.6/8305.
    10.1109/TCIAIG.2016.2592965
  22. Dias, Sérgio; Nguyen, Quoc; Jorge, Joaquim A; Gomes, Abel. "Multi-GPU-Based Detection of Protein Cavities using Critical Points". (2017): http://hdl.handle.net/10400.6/8307.
    10.1016/j.future.2016.07.009
  23. Silva, Frutuoso; Nguyen, Quoc; Gomes, Abel; Martins, Fernando; Clemente, Filipe Manuel. "A new tool for network analysis on team sports". (2017): http://hdl.handle.net/10400.6/7484.
    10.1109/ICE.2017.8279918
  24. Duarte, Rui; Gomes, Abel; Rui P.M. Duarte; Abel J.P. Gomes. "Real-Time Simulation of Cumulus Clouds through SkewT/LogP Diagrams". Computers & Graphics 67 (2017): 103-114. http://hdl.handle.net/10400.6/8306.
    10.1016/j.cag.2017.06.005
  25. Cardoso, Rui Costa; Freire, Mario; Gomes, Abel. "A User Trust System for Online Games: Part II". (2017): http://hdl.handle.net/10400.6/8300.
    10.1109/TCIAIG.2016.2593000
  26. Adriano Nunes Raposo; Abel Gomes. "Computational 3D Assembling Methods for DNA: a Survey". IEEE/ACM Trans. on Computational Biology and Bioinformatics 13 6 (2016): 1068-1085. http://www.it.pt/Publications/PaperJournal/18914.
    10.1109/TCBB.2015.2510008
  27. João Miguel Corona Correia; Abel Gomes. "Balloon extraction from complex comic books using edge detection and histogram scoring". Multimedia Tools and Applications 75 18 (2016): 11367-11390. http://www.it.pt/Publications/PaperJournal/18913.
    10.1007/s11042-015-2858-0
  28. Abel J.P. Gomes. "A Total Order Heuristic-Based Convex Hull Algorithm for Points in the Plane". Computer-Aided Design 70 (2016): 153-160. http://dx.doi.org/10.1016/j.cad.2015.07.013.
    10.1016/j.cad.2015.07.013
  29. João Manuel da Silva Fernandes Muranho; Ana Ferreira; Joaquim Sousa; Abel Gomes; Alfeu Sá Marques. "Convergence Issues in the EPANET solver". Procedia Engineering 119 - (2015): 700-709. http://www.it.pt/Publications/PaperJournal/17584.
    10.1016/j.proeng.2015.08.923
  30. Dagmawi Lemma Gobena; Gonçalo Nuno Paiva Amador; Abel Gomes; Dejene Ejigu. "Delegation Theory in the Design of Cross-Platform User Interfaces". Lectures Notes in Computer Science 9170 (2015): 519-530. http://www.it.pt/Publications/PaperJournal/17585.
    10.1007/978-3-319-20916-6_48
  31. Abel Gomes. "Guest Editor’s Introduction: Massively Multiplayer Online Games Technologies and Applications". IEEE Transactions on Emerging Topics in Computing 3 2 (2015): 258-259. http://www.it.pt/Publications/PaperJournal/17583.
    10.1109/TETC.2015.2426031
  32. Rui S.V. Rodrigues; José F.M. Morgado; Abel J.P. Gomes. "A contour-based segmentation algorithm for triangle meshes in 3D space". Computers & Graphics 49 (2015): 24-35. https://doi.org/10.1016/j.cag.2015.04.003.
    10.1016/j.cag.2015.04.003
  33. Adriano Nunes Raposo; Abel Gomes; Raposo, A.N.; Gomes, A.J.P.. "isDNA: A Tool for Real-Time Visualization of Plasmid DNA Monte-Carlo Simulations in 3D". Lectures Notes in Computer Science 9044 - (2015): 566-577. http://www.it.pt/Publications/PaperJournal/20310.
    10.1007/978-3-319-16480-9_54
  34. Sérgio Emanuel Duarte Dias; Abel Gomes. "Triangulating Molecular Surfaces over a LAN of GPU-Enabled Computers". Parallel Computing 42 10 (2015): 35-47. http://www.it.pt/Publications/PaperJournal/9576.
    10.1016/j.parco.2014.09.009
  35. Gomes, Abel. "Efficient deformation algorithm for plasmid DNA simulations". BMC Bioinformatics (2014): http://www.biomedcentral.com/1471-2105/15/301.
    10.1186/1471-2105-15-301
  36. Rui Costa; Abel Gomes; Cardoso, R.C.; Gomes, A.. "Towards a Trust Framework for Multi-User Virtual Environments". Lectures Notes in Computer Science 8579 (2014): 754-768. http://www.it.pt/Publications/PaperJournal/9572.
    10.1007/978-3-319-09144-0_52
  37. João Manuel da Silva Fernandes Muranho; Ana Ferreira; Joaquim Sousa; Abel Gomes; Alfeu Sá Marques. "Technical performance evaluation of water distribution networks based on EPANET". Procedia Engineering 70 (2014): 1201-1210. http://www.it.pt/Publications/PaperJournal/9570.
    10.1016/j.proeng.2014.02.133
  38. Duarte, Rui P.; Morgado, José Francisco; Gomes, Abel J. P.. "Visualização Dinâmica de Nuvens Através de Diagramas Termodinâmicos". (2014): http://hdl.handle.net/10400.19/2629.
  39. Gomes, A.; Morgado, J.. "A generalized regula falsi method for finding zeros and extrema of real functions". Mathematical Problems in Engineering 2013 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84883151594&partnerID=MN8TOARS.
    10.1155/2013/394654
  40. Gomes, Abel. "A continuation algorithm for planar implicit curves with singularities". Computers & Graphics (2013): http://dx.doi.org/10.1016/j.cag.2013.11.006.
    10.1016/j.cag.2013.11.006
  41. Muranho, J.; Ferreira, A.; Sousa, J.; Gomes, A.; Marques, A.S.. "WaterNetGen: An EPANET extension for automatic water distribution network models generation and pipe sizing". Water Science and Technology: Water Supply 12 1 (2012): 117-123. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861036359&partnerID=MN8TOARS.
    10.2166/ws.2011.121
  42. Raposo, A.N.; Gomes, A.J.P.. "3D molecular assembling of B-DNA sequences using nucleotides as building blocks". Graphical Models 74 4 (2012): 244-254. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862015215&partnerID=MN8TOARS.
    10.1016/j.gmod.2012.05.001
  43. Dias, S.E.D.; Gomes, A.J.P.. "Graphics processing unit-based triangulations of Blinn molecular surfaces". Concurrency Computation Practice and Experience 23 17 (2011): 2280-2291. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054939748&partnerID=MN8TOARS.
    10.1002/cpe.1783
  44. Pinto, E.; Amador, G.; Gomes, A.. "A graphics library for delivering 3D contents on web browsers". Proceeding - 6th International Conference on Digital Content, Multimedia Technology and Its Applications, IDC2010 (2010): 109-114. http://www.scopus.com/inward/record.url?eid=2-s2.0-77958023153&partnerID=MN8TOARS.
  45. Gomes, A.J.P.; Morgado, J.F.M.; Pereira, E.S.. "A BSP-based algorithm for dimensionally nonhomogeneous planar implicit curves with topological guarantees". ACM Transactions on Graphics 28 2 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-70349684856&partnerID=MN8TOARS.
    10.1145/1516522.1516528
  46. Silva, Frutuoso G. M.; Gomes, Abel J. P.. "A Nonoriented, Nonmanifold Boundary Representation for Geometric Applications". Journal of Graphics, GPU, and Game Tools 13 3 (2008): 15-33. http://dx.doi.org/10.1080/2151237X.2008.10129264.
    10.1080/2151237x.2008.10129264
  47. Rodrigues, Rui; Morgado, José Francisco; Silva, Frutuoso; Gomes, Abel. "Esquema de Multiresolução para Aplicações Geométricas em Tempo Real". (2007): http://hdl.handle.net/10400.19/2588.
  48. Rodrigues, R.; Morgado, J.; Silva, F.; Gomes, A.; Rui Sérgio Viegas Rodrigues; José Francisco Monteiro Morgado; Frutuoso Gomes Mendes da Silva; Abel Gomes. "A ghost cell-based data structure for multiresolution meshes". Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 4706 LNCS PART 2 (2007): 666-679. http://www.scopus.com/inward/record.url?eid=2-s2.0-38049168662&partnerID=MN8TOARS.
  49. Gomes, A.. "A boundary-incomplete representation for n-dimensional non-manifold geometric objects". WSEAS Transactions on Computers 5 12 (2006): 3008-3015. http://www.scopus.com/inward/record.url?eid=2-s2.0-33749079188&partnerID=MN8TOARS.
  50. Raposo, Adriano; Gomes, Abel João Padrão; Raposo, A.N.; Gomes, A.J.P.. "Polygonization of Multi-Component Non-Manifold Implicit Surfaces through A Symbolic-Numerical Continuation Algorithm". (2006): 399-406. http://hdl.handle.net/10400.6/614.
    10.1145/1174429.1174496
  51. Frutuoso Gomes Mendes da Silva; Abel Gomes; Silva, F.G.M.; Gomes, A.J.P.. "Oversimplified Euler Operators for a Non-Oriented, Non-manifold B-Rep Data Structure". Lectures Notes in Computer Science 3804 1 (2005): 25-34. http://www.it.pt/Publications/PaperJournal/2300.
  52. Morgado, J.F.M.; Gomes, A.J.P.. "A derivative-free tracking algorithm for implicit curves with singularities". Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 3039 (2004): 221-228. http://www.scopus.com/inward/record.url?eid=2-s2.0-24944540844&partnerID=MN8TOARS.
  53. Gomes, A.J.P.. "Euler operators for stratified objects with incomplete boundaries". ACM Symposium on Solid Modeling and Applications, SM (2004): 315-320. http://www.scopus.com/inward/record.url?eid=2-s2.0-21644481443&partnerID=MN8TOARS.
  54. Silva, F.G.M.; Gomes, A.J.P.; Frutuoso Gomes Mendes da Silva; Abel Gomes. "AIF - A data structure for polygonal meshes". Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2669 3 (2003): 478-487. http://www.scopus.com/inward/record.url?eid=2-s2.0-35248869726&partnerID=MN8TOARS.
  55. Morgado, F.; Gomes, A.. "A non-uniform binary space partition algorithm for 2D implicit curves". Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2669 (2003): 418-427. http://www.scopus.com/inward/record.url?eid=2-s2.0-35248850762&partnerID=MN8TOARS.
  56. Reade, C.M.P.; Middleditch, A.E.; Gomes, A.J.. "Least stratifications and cell-structured objects in geometric modelling". International Journal of Shape Modeling 8 1 (2002): 59-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036627428&partnerID=MN8TOARS.
    10.1142/S0218654302000054
  57. Middleditch, A.E.; Reade, C.M.P.; Gomes, A.J.. "Set-combinations of the mixed-dimension cellular objects of the Djinn API". CAD Computer Aided Design 31 11 (1999): 683-694. http://www.scopus.com/inward/record.url?eid=2-s2.0-0001499803&partnerID=MN8TOARS.
    10.1016/S0010-4485(99)00065-2
  58. Gomes, Abel; Middleditch, Alan; Reade, Chris. "Mathematical model for boundary representations of n-dimensional geometric objects". Proceedings of the Symposium on Solid Modeling and Applications (1999): 270-277. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032659495&partnerID=MN8TOARS.
  59. Gomes, A.J.P.; Teixeira, JosC.G.. "Form feature modelling in a hybrid CSG/BRep scheme". Computers and Graphics 15 2 (1991): 217-229. http://www.scopus.com/inward/record.url?eid=2-s2.0-0025897877&partnerID=MN8TOARS.
    10.1016/0097-8493(91)90075-S
Thesis / Dissertation
  1. Simões, Tiago Miguel Carrola. "Geometric algorithms for cavity detection on protein surfaces". PhD, 2019. http://hdl.handle.net/10400.6/7149.
  2. Silva, João Rodrigo de André e Alves. "Ray Tracing in Non-Euclidean Spaces". Master, 2018. http://hdl.handle.net/10400.6/9901.
  3. Ribeiro, Maria Madalena Gonçalves. "Adaptive Methods for Color Vision Impaired Users". PhD, 2017. http://hdl.handle.net/10400.6/4777.
  4. Amador, Gonçalo Nuno Paiva. "Influence-based motion planning algorithms for games". PhD, 2017. http://hdl.handle.net/10400.6/4762.
  5. Cardoso, Rui João Morais de Almeida Costa. "Enhancing trustability in MMOGs environments". PhD, 2017. http://hdl.handle.net/10400.6/4456.
  6. Inácio, Pedro Daniel Clemente Rodrigues. "Extracting speech text from comics". Master, 2016. http://hdl.handle.net/10400.6/7725.
  7. Duarte, Rui Pedro Monteiro Amaro. "Realistic simulation and animation of clouds using SkewT-LogP diagrams". PhD, 2016. http://hdl.handle.net/10400.6/4315.
  8. Rodrigues, Rui Sérgio Viegas. "Human perception-oriented segmentation for triangle meshes". PhD, 2016. http://hdl.handle.net/10400.6/4320.
  9. Dias, Sérgio Emanuel Duarte. "Geometric representation and detection methods of cavities on protein surfaces". PhD, 2015. http://hdl.handle.net/10400.6/3981.
  10. Raposo, Adriano Nunes. "Geometric modeling, simulation, and visualization methods for plasmid DNA molecules". PhD, 2015. http://hdl.handle.net/10400.6/4039.
  11. Quyen, Nguyen Trong. "Macro-mechanical modelling and simulation of textile fabric and clothing with S-FEM". PhD, 2014. http://hdl.handle.net/1822/34453.
  12. Pereira, Tiago Branco. "Reconstructing triangulated surfaces from unorganized points through local skeletal stars". Master, 2014. http://hdl.handle.net/10400.6/5516.
  13. Ferreira, Tiago Alexandre Fonseca Ribeiro. "Entropy-Based Dynamic Ad Placement Algorithms for In-Video Advertising". Master, 2014. http://hdl.handle.net/10400.6/6133.
  14. Adaixo, Michael Carlos Gonçalves. "Influence map-based pathfinding algorithms in video games". Master, 2014. http://hdl.handle.net/10400.6/5517.
  15. Marcelino, Vera Alexandra Henriques. "Renderização de curvas implícitas discretizadas no domínio da imagem". Master, 2011. http://hdl.handle.net/10400.6/3732.
  16. Alexandre, Ricardo Jorge da Cruz. "Re-engineering jake2 to work on a grid using the GridGain Middleware". Master, 2010. http://hdl.handle.net/10400.6/3735.
  17. Dias, Paulo Jorge Faria. "Desenvolvimento de plataforma de suporte à actualização do modelo de processo de negócios". Master, 2010. http://hdl.handle.net/10400.6/3762.
  18. Amador, Gonçalo Nuno Paiva. "Real-time 3D rendering of water using CUDA". Master, 2009. http://hdl.handle.net/10400.6/3864.
  19. Dias, Sérgio Emanuel Duarte. "Rendering molecular surfaces as implicit surfaces on GPUs". Master, 2009. http://hdl.handle.net/10400.6/3856.
  20. Pinto, Edgar Marchiel. "A graphics pipeline for directtly rendering 3D scenes on web browsers". Master, 2009. http://hdl.handle.net/10400.6/3863.
  21. Raposo, Adriano Nunes. "Poligonização de Superfícies Implícitas por Amostragem Baseada num Corrector de Newton". Master, 2006. http://hdl.handle.net/10400.6/615.

Other

Other output
  1. Synthesis of a Unified Approach to Shape Modeling. Geometric Modeling: Theory and Practice. 1997. Gomes, Abel; Middleditch, Alan. http://dx.doi.org/10.1007/978-3-642-60607-6_15.
    10.1007/978-3-642-60607-6_15
  2. Modelling Shape Through a Cellular Representation Scheme. Beiträge zur Graphischen Datenverarbeitung. 1996. Gomes, Abel J. P.; Teixeira, José C. G.. http://dx.doi.org/10.1007/978-3-642-61020-2_2.
    10.1007/978-3-642-61020-2_2
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2019/01/01 - 2024/12/31 Reconstructing Surfaces from Clouds of Points with Theoretical Guarantees
Supervisor of Quoc Trong Nguyen
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2019/01/01 - 2024/12/31 False-Negative Reduction in Mammography Breast Cancer Diagnosis Through Radiomics and Deep Learning
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2015/09/15 - 2020/11/06 Reconstructing 3D Surfaces from Point Sets
Supervisor of Gonçalo Vinhas Leitão
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2015/09/15 - 2019/05/19 Geometric Algorithms for Cavity Detection on Protein Surfaces
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2013/09/15 - 2017/06/14 Influence-based Motion Planning Algorithms for Games
Supervisor of Gonçalo Nuno Paiva Amador
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2012/09/15 - 2017/06/14 Recoloring Algorithms for Color Vision Defective Computer Users
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2013/09/15 - 2017/01/03 Enhancing Trustability of MMOGs Environments
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2012/09/15 - 2016/09/22 Service by Delegation Framework for User Interfaces in Ubiquitous Environment
Supervisor
 Software Engineering (PhD)
University of Addis Ababa, Ethiopia
2012/09/15 - 2016/09/22 Metodologia de Análise e Intervenção nas Patologias de Pedras Naturais em Edifícios Históricos
Co-supervisor
 Engenharia Civil (PhD)
Universidade da Beira Interior, Portugal
2011/09/15 - 2016/05/20 Realistic Simulation and Animation of Clouds using SkewT/LogP Diagrams
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2011/09/15 - 2016/05/06 Human Perception-Oriented Segmentation for Triangle Meshes
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2011/09/15 - 2015/05/22 Geometric Representation and Detection Methods of Protein Cavities
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2011/09/15 - 2015/03/19 Geometric Modeling, Simulation, and Visualization Methods for Plasmid DNA Molecules
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2011/09/15 - 2014/03/31 Macro-Mechanical Modelling and Simulation of Textile Fabric and Clothing with S-FEM
Co-supervisor
 Engenharia Têxtil (PhD)
Universidade do Minho, Portugal
2009/09/15 - 2012/09/13 Gestão de Sistemas de Abastecimento de Água: Geração de Modelos, Dimensionamento e Avaliação de Desempenho
Co-supervisor
 Engenharia do Ambiente (PhD)
Universidade de Coimbra, Portugal
2002/09/15 - 2006/02/10 Estruturas Poligonais Deformáveis com Resolução Variável
Supervisor of Frutuoso Gomes Mendes da Silva
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2001/09/15 - 2005/11/05 Poligonização de Curvas e Superfícies Implícitas Não-Homogéneas com Preservação Topológica
Supervisor of José Francisco Monteiro Morgado
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal
2001/01/31 - 2003/09/30 Logtalk: Design of an Object-Oriented Logic Programming Language
Supervisor
 Engenharia Informática (PhD)
Universidade da Beira Interior, Portugal

Consulting

Activity description Institution / Organization
2021/01/01 - Current Scientific advisor of FastCompChem Ltd. for research in computational methods for protein docking and drug design. FastComptChem Ltd, Portugal

Journal scientific committee

Journal title (ISSN) Publisher
2019/06/01 - Current Computer and Graphics (0097-8493) Elsevier
2019/01/01 - Current International Journal of Computer Games Technology (1687-7047) Hindawi / Wiley
Distinctions

Award

2021 Sigma Xi Full Member by Anonymous Nomination
Sigma Xi the Scientific Research Society, United States
2017 Article's Honorable Mention
2015 Best Paper Award