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ISABEL SÁ-CORREIA is Emerita and Distinguished Professor of Biological Sciences (BS), the founder of this scientific area at Instituto Superior Técnico (IST), Universidade de Lisboa (ULisboa), and at the Institute for Bioengineering and Biosciences (iBB). A Chemical Eng. graduate (1975, IST), Prof Sá-Correia evolved her field of training and activity to BS. After a Postgrad. in Biolog. Eng. (Molecular Biology) by U. Nova de Lisboa/IGC- (1980), she got a PhD degree (Yeast Physiology, thesis work at IGC; Supervisor: N van Uden) defended at IST (Chemical Eng., 1984). As Fulbright Visiting Assist. Prof., she carried out post-doctoral studies (Molecular Biology of Bacteria, with A M Chakrabarty), Univ. Illinois at Chicago, Medical Center, Chicago, USA (1985/86). The Agregação/Habilitation title was obtained in 1992 at IST. RESEARCH ACTIVITIES: In the fields of Molecular & Cellular Microbiology and Functional & Comparative Genomics with impact in Microbial Biotechnology & Human Health. Current programs focus on i) Physiological Genomics of Stress Response and Tolerance in yeasts ii) Multidrug/multixenobiotic membrane transporters iii) Advanced Integrated Yeast Biorefineries. With current h indexes 56-WOS or 74-Google Scholar, Prof. Sá-Correia integrates the lists of the career-long most cited scientists´ worldwide (Stanford Univ, 2020, 2021, 2022, 2023). She (co)authored 300 peer-reviewed articles, 1 Book, 2 Conf. Abst. Books, 30 Book Chapt., 2 patents, 1 MTA. She coordinated the molecular biology component of YEASTRACT/YEASTRACT+ database (http://yeastract-plus.org/), published annotated non-conventional yeast genomes and clonal variants of Burkholderia cepacia complex isolates obtained from cystic fibrosis patients during long-term respiratory infection, and deposited, in public databases, several dozens of nucleotide sequences. ADVANCED TRAINING: Mentor of 18 researchers with PhD (for more than 2 years, each) and main scientific supervisor of 33 PhD theses and 65 MSc theses. FUNDED PROJECTS: Under her leadership 4 EU projects, 3 EraNet projects (Industrial Biotech.-2, Pathogenomics-1), 2 COST actions, 5 bi-lateral actions, above 30 national projects, a contract with industry, were developed by several IST teams. SCIENTIFIC POSITIONS, APPOINTMENTS AT ULISBOA. General Council, ULisboa (2013/21; 2021/22). Ethics Committee, IST (2017-present). Scientific Board, IST (2009-2016). Coordinator, Ph.D. Program in Biotechnology and Biosciences, IST (2008-2022). Director, FCT funded doctoral program BIOTECnico (2015-present). Coord., Master´s Program in Microbiology, ULisboa (2013-2020). Coord., at IST, Erasmus Mundus II Master's Program in Systems Biology-euSYSBIO (2010-2015). OTHER APPOINTMENTS: President, Portuguese Soc. Microbiol. (SPM) and FEMS Council delegate (2009-2020). SPM Advisory Council (2021/23), Chair, Org. & Scient. Committ., PYFF6 - 6th Conf. Physiology of Yeast Filamentous Fungi, 2016. National Education Council (CNE) member (2015-2020). ERC Adv. Grants evaluation panel "Genetics, Genomics, Bioinformatics & Systems Biology" (2010, 2012, 2014, 2016). EDITORIAL ACTIVITIES- Editorial Boards: Appl Environ Microbiol (1997-2006); Microb Cell (since 2013); OMICS (since 2010); FEMS Yeast Res (since 2007).Editor: 2 Books. Guest-editor, Special Issues: OMICS (2), Frontiers in Physiology (1) Front. Genet. & Microbiol. (1), J. of Fungi (1). SCIENCE COMMUNICATION: (Co)Founder and (co)organizer leader, International Microorganism Day https://www.internationalmicroorganismday.org/. DISTINCTIONS: Excellence in Science Award, FCT, 2004; IST Distinguished Prof., 2018; Emerita Prof. , ULisboa, 2023; van Uden Career Award 2021, SPM; Special Merit Award 2022, FEMS; Elect. Active Member, New York Acad. Sci., 1992; Academia das Ciências de Lisboa corresponding member (2015), full member (2023) (Biol. Sciences) and The European Academies' Science Advisory Council (EASAC) member.
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Identification

Personal identification

Full name
Isabel Maria de Sá Correia Leite de Almeida

Citation names

  • Isabel Sá-Correia

Author identifiers

Ciência ID
F116-3CD5-29B0
ORCID iD
0000-0003-2208-5183
Google Scholar ID
IOqDH2sAAAAJ
Researcher Id
H-4054-2011
Scopus Author Id
7005894845

Telephones

Telephone
  • 218417682 (Professional)

Addresses

  • AV ROVISCO PAIS, 1049-001, LISBOA, Lisboa, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology
  • Natural sciences - Biological Sciences - Molecular Biology
  • Natural sciences - Biological Sciences - Mycology
  • Medical and Health Sciences - Health Sciences - Infectious Diseases
  • Natural sciences - Biological Sciences - Cell Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
French Upper intermediate (B2) Proficiency (C2) Intermediate (B1) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Elementary (A2) Advanced (C1) Elementary (A2) Advanced (C1)
Education
Degree Classification
1992
Concluded
 Habilitation in Chemical Engineering (Biotechnology/Biological Sciences) (Título de Agregado)
Major in Biological Sciences
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Approved unanimously
1986
Concluded
 Postdoctoral studies on the Molecular Biology of Alginate Biosynthesis in Pseudomonas aeruginosa (Pós-doutoramento)
University of Illinois at Chicago Department of Microbiology and Immunology, United States
 N/A
1984
Concluded
 PhD in Chemical Engineering (Biotechnology/Biological Sciences); Yeast Physiology (Doutoramento)
Major in Microbiologia e Fisiologia Microbiana
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Bioconversão de Amido e Inulina por Verduras. Produção de Biomassa e Etanol" (THESIS/DISSERTATION)
 Distinction and Honors
1980
Concluded
 Postgraduation in Biological Engineering (Molecular Biology) (Pós-Graduação)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
 Very good
1975
Concluded
 Graduation in Chemical Engineering (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
 17/20
Affiliation

Science

Category
Host institution 		Employer
2015/01/01 - Current Coordinating Researcher (Research) Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
1993 - 2015 Coordinating Researcher (Research) Instituto de Biotecnologia e Bioengenharia, Portugal
Instituto de Biotecnologia e Bioengenharia, Portugal
1985/09 - 1986/09 Invited Auxiliary Researcher (Research) University of Illinois at Chicago Department of Microbiology and Immunology, United States

Teaching in Higher Education

Category
Host institution 		Employer
1995 - Current Full Professor (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
1989 - 1995 Associate Professor (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal
1984 - 1989 Assistant Professor (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal
1975 - 1984 Assistant (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal
Projects

Contract

Designation Funders
2022/02/01 - Current Blue Bioeconomy Pact (PBA), financed by the Portuguese Recovery and Resilience Plan (“PRR”) in its Component C5 (Training and Business Innovation under the Regulation of the Incentive System “Agendas for Business Innovation”
Candidatura C632741873-00467082, projeto de investimento n.º 16
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
Portuguese Recovery and Resilience Plan (“PRR”)
Ongoing
2019 - Current COST Action: CA18229 - NON-CONVENTIONAL YEASTS FOR THE PRODUCTION OF BIOPRODUCTS (member of the management committee)
COST Action: CA18229
COST Action: CA18229
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 European Commission

N/A
2022/12/08 - 2025/12/07 Mechanistic insights into adaptation and increased robustness to acetic acid and other weak acids toxicity in yeasts
2022.01501.PTDC
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2020/10/28 - 2023/06/30 Move2LowC-Biologically Based Fuels (coordinator of the IST/iBB research team)
POCI-01-0247-FEDER-046117
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
European Regional Development Fund
Ongoing
2017/06/19 - 2021/06/17 Biodata.pt, Portuguese Biological Data Network (Principal Investigator of the IST-iBB team), co-funded through FEDER, POCI, PORL, POA and national funds through FCT
22231-01/SAICT/2016
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal
Concluded
2017/02/01 - 2021/01/03 EraNet IB Project YEASTPEC-Engineering of the yeast Saccharomyces cerevisiae for bioconversion of pectin-containing agro-industrial side-streams
ERA-IB-2/0003/2015
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2016/05/01 - 2020/03/31 Structural and functional analysis of the Haa1 transcription factor required for yeast response and resistance to acetic acid (Principal Investigator of the IST team)
PTDC/BBB-BEP/0385/2014
Co-Principal Investigator (Co-PI)
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2016/02/11 - 2020/03/31 Molecular and Mechanical Forces in Biology measured with Force Feedback Microscopy (Principal Investigator of the IST team)
PTDC/FIS-NAN/6101/2014
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2014/04/01 - 2015/07/31 Major Facilitator Superfamily transporters in the context of modern agriculture constraints: exploratory studies (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/3599-PPCDT/134038/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2014/02/03 - 2015/02/02 Biological physics studies based on Force Feedback Microscopy (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/3599-PPCDT/134420/PT
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2010 - 2015 COST Action-Microbial cell surface determinants of virulence as targets for new therapeutics in Cystic Fibrosis (member of the management committee)
COST Action BM1003
COST Action BM1003
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 European Commission
Concluded
2011/03/01 - 2014/07/31 EraNet Industrial Biotechnology project INTACT-Integral Engineering of Acetic Acid Tolerance in Yeast
ERA-IB/0002/2010
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2010/04/01 - 2013/09/30 Resistance to pesticides and other chemical stresses of agricultural interest: Role of plant Major Facilitator Superfamily (Principal Investigator of the IST team) transporters
info:eu-repo/grantAgreement/FCT/3599-PPCDT/102967/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2010/04/01 - 2013/09/30 QCMTF-Biosensor platform for transcription factor DNA binding activity detection (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/3599-PPCDT/108517/PT
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2010/04/01 - 2013/09/30 ZygoSacAR-Mechanistic insights into acetic acid resistance in food spoilage yeasts: from the experimental model Saccharomyces cerevisiae to Zygosaccharomyces spp
info:eu-repo/grantAgreement/FCT/3599-PPCDT/102608/PT
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2012 - 2013 Contract of Technological Development FNA (SUMOL+COMPAL, S.A.)
Project FNA
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 SUMOL+COMPAL, S.A.)
2010/11/08 - 2012/03/06 EraNet Pathogenomics project-ADHRES-signature Project: expression profile of genes involved in adhesion( ADH) and resistance to antibiotics(RES) in bacterial biofilms of Pseudomonas aeruginosa, P. putida and Burkholderia cenocepacia
ERA-PTG/SAU/0001/2008
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2008/12/01 - 2011/11/30 IMATINIB RESISTANCE AND TARGETS IN CHRONIC MYELOID LEUKAEMIA: POST-GENOMIC APPROACHES USING YEAST AS MODEL SYSTEM
info:eu-repo/grantAgreement/FCT/3599-PPCDT/71760/PT
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2008 - 2011 Insights into the mechanisms underlying the acquisition of antimicrobial resistance during chronic lung infection and the pathogenicity of Burkholderia cenocepacia, Burkholderia array project BA-009-A
Burkholderia array project BA-009-A
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Cystic Fibrosis Foundation Therapeutics Inc
Concluded
2007/09/01 - 2010/11/30 PROBIOETHANOL - Proteomics and engineering of yeast ethanol tolerance for high-productivity bio-ethanol fermentation processes (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/66151/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2007/09/12 - 2010/11/10 Characterization and modeling of a specific transcriptional regulatory network required for multidrug resistance in yeast.
info:eu-repo/grantAgreement/FCT/3599-PPCDT/72063/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2007/10/27 - 2010/10/26 Acute versus persistent infection by Burkholderia cepacia complex bacteria in cystic fibrosis patients: underlying mechanisms, in particular the role of exopolysaccharide biosynthesis
info:eu-repo/grantAgreement/FCT/3599-PPCDT/69591/PT
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2007/07/01 - 2010/06/30 Herbicide resistance in Arabidopsis thaliana: Role of plant multidrug resistance transporters (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/3599-PPCDT/67858/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2006/01/02 - 2008/01/01 Insights into the complex regulatory networks acting in yeast cells challenged with drugs/chemical stresses: genome-wide expression approaches supported by bioinformatics
info:eu-repo/grantAgreement/FCT/PDCT/56838/PT
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
2005/01/01 - 2007/12/31 DBYeast: Infrastructures and algorithms for analysis and identification of gene regulatory networks (Principal Investigator of the IST team)
info:eu-repo/grantAgreement/FCT/Orçamento de Funcionamento/POSC/57398/PT
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2007/01 - 2007/12 Transcriptional regulatory networks and the adaptation of gene expression to deleterious chemical environments- the case study of yeast drug response
F-12/07
Principal investigator
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2003/10/01 - 2007/09/30 Antimalarial drug resistance: from Yeast to Plasmodium
info:eu-repo/grantAgreement/FCT/POCI/46526/PT
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2003/02/01 - 2007/02/01 Adaptation and resistance to organic acid food preservatives in yeast
info:eu-repo/grantAgreement/FCT/POCI/45347/PT
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2005 - 2007 Laboratory of Microbial Biotechnology in the Post-genomic Era
CONC-REEQ/696/2002
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2004 - 2006 Studies on Molecular Microbiology in the post-genomic era (MOLMICROBIOL)
Plurianual IBQF (FCT) - UI 96
Plurianual IBQF (FCT) - UI 96
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2003/01/01 - 2005/12/31 Genomic-oriented studies on multidrug resistance in Saccharomyces cerevisiae
info:eu-repo/grantAgreement/FCT/POCI/38115/PT
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2004/01 - 2005/12 Bi-lateral action-Sequence-function relation of beta-1 4-glucuronosyltransferase proteins, GelK and WciQR
4.1.1/France
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
Concluded
2001/01/02 - 2004/01/01 BACTERIAL POLYSACCHARIDE ENGINEERING
info:eu-repo/grantAgreement/FCT/POCI/35733/PT
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2001/01 - 2003/12 Bi-Lateral Action BURKHOLDERIA CEPACIA LUNG INFECTIONS IN CYSTIC FIBROSIS PATIENTS
423/DAAD
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
Concluded
2000/01 - 2003/12 E.U. project Strategies to accelerate the productive biodegradation of several herbicides under environmental stress conditions
E.U. (QLK3-CT-1999-00041)
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 European Commission
Concluded
2002 - 2003 Structural approaches to elucidate the action of Saccharomyces cerevisiae transcription factor Haa1 in the control of the Haa1-signalling pathway under acetic acid stress, European Network INSTRUCT (Integrated Structural Biology Infrastructure
European Network INSTRUCT (Integrated Structural Biology Infrastructure)
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 European Commission
Concluded
2000/03 - 2002/03 Biotechnology of gellan gum: biosynthetic pathway, genetic and environmental engineering and structure/properties relations
PRAXIS P/BIO/12020/98
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2000/01 - 2001/01 Biochemical characterization of the enzyme glucuronosil transferase (Gel K) from Sphingomonas paucimobilis involved in the biosynthesis of the exopolysaccharide gellan
422 K4
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
Concluded
1999/01 - 2000/01 Biotechnology of gellan gum- biosynthesis and structure / property relations
B-83/99
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
1997/09 - 1999/09 European network for the functional analysis of yeast genes discovered by systematic sequencing (phase II), EUROFAN II; Transport node
E.U. (BIO4-CT97-2294)
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal
 European Commission
Concluded
1997/06 - 1999/06 Functional analysis of yeast genes encoding putative transmembrane solute transporters
PRAXIS/PCNA/P/BIO/79/96
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
1997/06 - 1999/06 Pseudomonas aeruginosa and Burkholderia cepacia infections in cystic fibrosis- typing of isolates and studies on exopolysaccharide biosynthesis
PRAXIS/PSAU/P/SAU/59/96
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
1995/05 - 1999/05 Genetic and environmental manipulation of bacterial exopolysaccharide biosynthetic pathways
PRAXIS/2/2.1/BIO/1125/95
Principal investigator
Fundação para a Ciência e a Tecnologia
1996/01 - 1998/01 European network for the functional analysis of yeast genes discovered by systematic sequencing (phase I), EUROFAN I; Six-pack fundamental analysis programme, Transport node
E.U. (BIO4-CT95-0080)
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal
 European Commission
Concluded
1994 - 1997 Microrganismos em Ambientes Extremos: mecanismos de adaptação (responsible for the IST team)
PBICT/BIO/1642/93
Researcher
Fundação para a Ciência e a Tecnologia
1992 - 1994 Mecanismos Moleculares Envolvidos na Ativação da H+-ATPase da Membrana Plasmática de Saccharomyces cerevisiae
STRIDE C/BIO/387/92
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 Fundação para a Ciência e a Tecnologia
1990/08 - 1993/08 Fisiologia de Bactérias Geneticamente Manipuladas
BIO/913/90
Principal investigator
Fundação para a Ciência e a Tecnologia
1991/01 - 1991/10 Fermentation and Valorization of Jerusalem Artichoke Tubers, Joule Programme
JOULE programme-Biological Conversion Projects (EEC)
Principal investigator
Universidade de Lisboa Instituto Superior Técnico, Portugal
 European Commission
Concluded
1987/01 - 1990/01 Produção e Caracterização de Exopolissacáridos de Origem Microbiana
BIO/61/87
Principal investigator
Fundação para a Ciência e a Tecnologia
Outputs

Publications

Book
  1. Isabel Sá-Correia. eBook: Sá-Correia, I., Louis, E., eds. (2020). Functional and Comparative Genomics of Saccharomyces and non-Saccharomyces Yeasts: Potential for Industrial and Food Biotechnology. Lausanne: Frontiers Media SA. doi: 10.3389/978-2-88963-522-1. 2020.
  2. Isabel Sá-Correia. Yeasts in Biotechnology and Human Health (I Sá-Correia, ed), included in the series Prog. Mol. Subcell. Biol., 58 (2019). Springer Cham, doi: 10.1007/978-3-030-13035-0. Springer Cham. 2019.
    10.1007/978-3-030-13035-0 • Editor
  3. Isabel Sá-Correia. Book of Abstracts - PYFF6 - 6th Conference on Physiology of Yeasts and Filametous Fungi. Portugal. 2016.
    Published
  4. Isabel Sá-Correia. SÁ-CORREIA, Isabel, FIALHO, Arsénio M. , VIEGAS, Cristina A. Microbial response to stress : what's new and how can it be applied ? : programme and abstracts of the Euroconference organised by the European Federation of Biotechnology (EFB) Working Party Microbial Physiology and the Sociedade Portuguesa de Biotecnologia, Sesimbra, Portugal, march 15-18, 1997. Gráfica Povoense Ltd. Gráfica Povoense Ltd.. 1997.
    Published • Editor
Book chapter
  1. Isabel Sá-Correia. "Sá-Correia, I., Microbiologia para Todos: A Importância da Literacia em Microbiologia, Em: MEMÓRIAS DA ACADEMIA DAS CIÊNCIAS DE LISBOA, MEMÓRIAS DA ACADEMIA DAS CIÊNCIAS DE LISBOA, XLVIII, 2022, pp 143- 155". In MEMÓRIAS DA ACADEMIA DAS CIÊNCIAS DE LISBOA, MEMÓRIAS DA ACADEMIA DAS CIÊNCIAS DE LISBOA, XLVIII. LISBOA, Portugal: Academia das Ciencias de Lisboa, 2022.
    Published
  2. Pais, Pedro; Oliveira, Jorge; Viana, Romeu; Costa, Inês V.; Sá-Correia, Isabel; Monteiro, Pedro T.; Teixeira, Miguel C.. "¿ Pais, P. Oliveira J, Viana R, Costa, IV, Sá-Correia I, Monteiro, PT, Teixeira MC. (2022). Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach. In: Devaux, F. (eds) Yeast Functional Genomics. Methods in Molecular Biology, vol 2477. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2257-5_23". In Methods in Molecular Biology, 419-437. Springer US, 2022.
    10.1007/978-1-0716-2257-5_23
  3. Palma, Margarida; Sa-Correia, Isabel. "15. Palma, M., Sá-Correia, I. “Physiological genomics of the highly weak-acid-tolerant food spoilage yeasts of Zygosaccharomyces bailii sensu lato”, in Yeasts in Biotechnology and Human Health: Physiological genomics approaches. included in the series Sá-Correia I (ed). Prog. Mol. Subcell Biol., 58 (2019) 58-85. Springer. Cham, doi: 10.1007/978-3-030-13035-0_4". In Progress in molecular and subcellular biology,, 85-109. 2019.
    10.1007/978-3-030-13035-0_4
  4. Godinho, Cláudia P.; Sá-Correia, Isabel. "1. Godinho, C.P., Sá-Correia, I., “Physiological genomics of multistress resistance in the yeast cell model and factory: Focus on MDR/MXR transporters”, in Yeasts in Biotechnology and Human Health: Physiological genomics approaches . Sá-Correia I (ed), included in the series Prog. Mol. Subcell. Biol., 58 (2019) 1-35. Springer Cham, doi: 10.1007/978-3-030-13035-0_1". In Progress in Molecular and Subcellular Biology, 1-35. Springer International Publishing, 2019.
    10.1007/978-3-030-13035-0_1
  5. Isabel Sá-Correia. "Response and tolerance to stress: the power of the analyses at the genome and the microbial system levels/ Resposta e tolerância a stresse: o poder das análises à escala do genoma e do sistema microbiano, Memórias da Academia das Ciências de Lisboa: Classe de Ciências, Tomo XLVI. Lisboa: Academia das Ciências de Lisboa.". In Memórias da Academia das Ciências de Lisboa: Classe de Ciências, Tomo XLVI. Lisboa: Academia das Ciências de Lisboa. 2019. LISBOA, Portugal: Academia das Ciências de Lisboa, 2019.
    Published
  6. Teixeira, M.C.; Monteiro, P.T.; Sá-Correia, I.. "Predicting gene and genomic regulation in Saccharomyces cerevisiae, using the YEASTRACT database: A step-by-step guided analysis,IN Progress in Molecular and Subcellular Biology Vol 1361". In Progress in molecular and subcellular biology. 2016.
    10.1007/978-1-4939-3079-1_22
  7. Sá-Correia, I.; Guerreiro, J.F.; Loureiro-Dias, M.C.; Leão, C.; Côrte-Real, M.. "Zygosaccharomyces, in Encyclopedia of Food Microbiology: Second Edition". In Encyclopedia of Food Microbiology: Second Edition. 2014.
  8. Xu, Lai; de Vrieze, Paul. "Burkholderia Proteomics: Methodologies, Challenges, and Applications, In: Burkholderia: From Genomes to Function". In Burkholderia: From Genomes to Function. Horizon Press, 2014.
    Published
  9. Mira, Nuno P.; Teixeira, Miguel C.; Sá-Correia, Isabel. "Characterization of Complex Regulatory Networks and Identification of Promoter Regulatory Elements in Yeast: “In Silico” and “Wet-Lab” Approaches, In: Methods in Molecular Biology vol 809 (Transcription Regulation)". In Methods in Molecular Biology, 27-48. Springer New York, 2011.
    10.1007/978-1-61779-376-9_2
  10. Cabrito, Tnia; Remy, Estelle; Teixeira, Miguel; Duque, Paula; S-correi, Isabel. "Resistance to Herbicides in the Model Organisms Saccharomyces cerevisiae and Arabidopsis thaliana: the Involvement of Multidrug Resistance Transporters". In Herbicides and Environment. InTech, 2011.
    10.5772/13057
  11. Isabel Sá-Correia. "Global adaptive response and resistance to agricultural fungicides: lessons from yeast and phytopathogenic fungi". In Fungicides: Chemistry, Environmental Impact and Health Effects, 228-253. New York: Nova Science Publishers, 2010.
    Published
  12. Isabel Sá-Correia. "Direitos e Deveres Sociais/artigo 68º-Paternidade e Maternidade". In Direitos Fundamentais 2.0. Coimbra, Portugal: Almedina, 2010.
    Published
  13. Fialho, Arsénio M.; Moreira, Leonilde M.; Granja, Ana Teresa; Hoffmann, Karen; Popescu, Alma; Sá-Correia, Isabel. "Biotechnology of the Bacterial Gellan Gum: Genes and Enzymes of the Biosynthetic Pathway". In A Portrait of State-of-the-Art Research at the Technical University of Lisbon, 233-250. Springer Netherlands, 2007.
    10.1007/978-1-4020-5690-1_15
  14. Oliveira, Arlindo L.; Freitas, Ana T.; Sá-Correia, Isabel. "Bioinformatics: A New Approach for the Challenges of Molecular Biology". In A Portrait of State-of-the-Art Research at the Technical University of Lisbon, 295-309. Springer Netherlands, 2007.
    10.1007/978-1-4020-5690-1_19
  15. Alves, Adriana da Fontoura. "As complexas redes de regulação da expressão genética na levedura: abordagens à escala do genoma". In O Mundo do RNA: Novos Desafios e Perspectivas Futuras, 223-242. Lisboa, Portugal: Lidel Edições Técnicas, 2007.
    Published
  16. Isabel Sá-Correia. "Engenharia Genética". In Biotecnologia: Fundamentos e Aplicações, 125-161. Lisboa, Portugal: Lidel Edições Técnicas, 2003.
    Published
  17. Isabel Sá-Correia; Marques, A.R.; Fialho, A.M.; Videira, P.A.; Silva, E.; Granja, A.T.; Hoffmann, K.. "Biosynthesis and degradation of polysaccharides in Sphingomonas elodea ATCC 31461". In Biological Resources Centres and the use of microbes, 33-51. Braga, Portugal: Micoteca da Universidade do Minho, 2003.
    Published
  18. Sá-Correia, Isabel; Fialho, Arsénio M.. "Electrotransformation of Sphingomonas paucimobilis". In Electrotransformation of Bacteria, 108-118. Springer Berlin Heidelberg, 2000.
    10.1007/978-3-662-04305-9_13
  19. Isabel Sá-Correia. "A Família das Pseudomonaceae e o género Pseudomonas spp". In Microbiologia, 123-136. Portugal: Lidel, Edições Técnicas, 2000.
    Published
  20. Isabel Sá-Correia. "Manipulation of alginate and gellan gum pathways in P. aeruginosa or P. elodea by recombinant DNA technology". In Progress in Biotechnology, 831-834. Amsterdam, Netherlands: Elsevier Science Publishers, 1994.
    Published
  21. Isabel Sá-Correia. "Jerusalem artichoke tubers juice or mash for the production of high ethanol concentrations by K. marxianus". In Cellulose Hydrolysis and Fermentation, 223-233. CPL press, 1992.
    Published
  22. Isabel Sá-Correia. "The Portuguese experience on the direct ethanolic fermentation of Jerusalem artichoke tubers". In Biomass for Energy and Industry, 546-550. London, United Kingdom: Elsevier Applied Science, 1992.
    Published
  23. Isabel Sá-Correia. "Influence of temperature on the production of exopolysaccharides by a non-axenic strain of Botryococcus braunii". In Biomass for Energy and Industry, 989-993. 1990.
    Published
  24. Isabel Sá-Correia. "Influence of calcium ion on ethanol tolerance and alcoholic fermentation by yeasts". In Biomass for Energy and Industry, 106-110. Elsevier Applied Science, 1990.
    Published
  25. Isabel Sá-Correia. "Effect of the aqueous soluble components of the immobilization matrix on ethanol and microbial exopolysaccharides production". In Physiology of Immobilized Cells, 399-404. Amsterdam, Netherlands: Elsevier Science Publisher, 1990.
    Published
  26. Isabel Sá-Correia. "Media composition, ethanol tolerance and fermentation productivity". In Energy from Biomass, 373-376. London, United Kingdom: Elsevier Applied Science, 1989.
    Published
  27. Isabel Sá-Correia. "Improvements in the alcoholic fermentation of high concentrations of glucose". In Euroforum - New Energies, 566-568. Bruxelles, Belgium: BS Stephens and Associates, 1989.
    Published
  28. Katzen, Raphael; Schell, Daniel J.. "Starch Biomass: a chemical feedstock for enzyme fermentation processes". In Critical Reports on Applied Chemistry, 115-148. New York, United States: John Wiley and Sons, 1987.
    Published
Conference paper
  1. Isabel Sá-Correia. "Sá-Correia, I, O Dia Internacional do Microrganismo: de Portugal para o Mundo, Book of Abstracts of the Confer: “Microrganismos e Desenvolvimento Sustentável”. 16 de setembro de 2022, Academia das Ciências de Lisboa, pp 4-7, http://www.acad-ciencias.pt/document-uploads/8399038_resumos-final.pdf". 2022.
    Published
  2. Isabel Sá-Correia. "Sá-Correia I, Bioeconomia circular e sustentabilidade, Book of Abstracts of the Conference: Ciência e Cultura – 50 anos depois da conferência de Estocolmo, 7 de junho 2022, pp. 68-70; Academia das Ciências de Lisboa.". 2022.
  3. Dos Santos, S.C.; Teixeira, M.C.; Mira, N.P.; Cabrito, T.R.; Palma, M.; Lourenço, A.B.; Dias, P.J.; et al. "Response and resistance to drugs and chemical stress in the yeast model: A genome-wide view". 2011.
    10.1109/ENBENG.2011.6026076
  4. Dias, P.J.; Sá-Correia, I.. "Reconstruction of the evolutionary history of the DHA1 family of yeast multidrug resistance transporters of the major facilitator superfamily". 2011.
    10.1109/ENBENG.2011.6026075
  5. Madeira, A.; Mira, N.P.; Santos, P.M.; Coutinho, C.P.; Pinto-De-Oliveira, A.; Moreira, A.S.; Roma-Rodrigues, C.; Sá-Correia, I.. "OMICS approaches to reveal Burkholderia cenocepacia adaptive strategies to long-term residence in the lungs of cystic fibrosis patients under antibiotic therapy". 2011.
    10.1109/ENBENG.2011.6026074
  6. Dos Santos, S.C.; Palma, M.; Tenreiro, S.; Mira, N.P.; Moreira, A.; Sá-Correia, I.. "Identification of targets and mechanisms of resistance to imatinib and quinine using a molecular systems biology approach". 2011.
    10.1109/ENBENG.2011.6026077
  7. Dias, P.J.; Costa, C.P.; Sá-Correia, I.; Teixeira, M.C.; Monteiro, P.T.; Oliveira, A.L.; Freitas, A.T.. "Using systems biology approaches to study a multidrug resistance network". 2011.
    10.1109/ENBENG.2011.6026073
  8. Davies, L.C.; Roma-Rodrigues, C.; Isabel Sá-Correia; Novais, J.M.; Martins-Dias, S.. "The response of Phragmites' sp. during acid orange 7 phytoremediation through proteomic analysis". Paper presented in 12th International Conference on Wetland System for Water Pollution Control, Venice, 2010.
    Published
  9. Freitas, A.T.; Ramalho, A.P.; Oliveira, C.A.; Nogueira, C.S.; Teixeira, Miguel Cacho; Isabel Sá-Correia; Oliveira, A.L.. "Identification of cooperative mechanisms in transcription regulatory networks using non-supervised learning techniques". Paper presented in In proceedings of the 2nd Workshop on Data Mining in Functional Genomics and Proteomics, ECML/PKDD, 2007.
    Published
  10. Teixeira, Miguel Cacho; Monteiro, P.; Jain, P.; Fernandes, A.R.; Mira, N.P.; Alenquer, M.; Freitas, A.T.; et al. "YEASTRACT: a database to search for transcription regulatory associations in Saccharomyces cerevisiae". Paper presented in XXII International Conference on Yeast Genetics and Molecular Biology, Bratislava, Slovak Republic, Bratislava, 2005.
    Published
  11. Teixeira, Miguel Cacho; Simões, T.; Santos, P.M.; Fernandes, A.R.; Isabel Sá-Correia. "A proteome analysis of the yeast response to the herbicide 2,4-dichlorophenoxyacetic acid.". Paper presented in XXII International Conference on Yeast Genetics and Molecular Biology, Bratislava, 2005.
    Published
  12. Cunha, M.V.; Sousa, S.A.; Leitão, J.H.; Moreira, L.M.; Videira, P.A.; Isabel Sá-Correia. "The exopolysaccharide from cystic fibrosis-associated B. cepacia complex bacteria: biosynthesis and possible involvement in the persistence and virulence of respiratory infections". Paper presented in 28th European Cystic Fibrosis Conference, Crete, 2005.
    Published
  13. Cunha, M.V.; Leitão, J.H.; Mahenthiralingam, E.; Vandamme, P.; Lito, L.; Barreto, C.; Salgado, M.J.; Isabel Sá-Correia. "Epidemiology and clinical outcome in relation to Burkholderia cepacia complex genomovar I, B. stabilis, B. cenocepacia and B. multivorans in a Portuguese Cystic Fibrosis Center". Paper presented in 26th European Conference of Cystic Fibrosis, Belfast, 2003.
    Published
  14. Worlitzsch, D.; Nonnenmacher, S.; Ulrich, M.; Sousa. S.; Leitão, J.H.; Isabel Sá-Correia; Coenye, T.; Vandamme, P.; Gõring, G.. "A rabbit antibody specific for exopolysaccharides of 10 different B. cepacia genomovars detects B. cepacia macrocolony formation in sputum of CF patients". Paper presented in 26th European Cystic Fibrosis Conference, Belfast, 2003.
    Published
  15. Cunha, M.V.; Leitão, J.H.; Sousa, S.; Lito, L.; Salgado, M.J.; Barreto, C.; Isabel Sá-Correia. "ersistent pulmonary infections with Burkholderia cepacia in patients from the major Portuguese cystic fibrosis center". Paper presented in 25th European Conference of Cystic Fibrosis, Genoa, 2002.
    Published
  16. Cabral, M.G.; Isabel Sá-Correia; Viegas, C.A.. "Activation of plasma membrane H+-Atpases during latency induced by 2-methyl-4-chlorophenoxyacetic acid (MCPA)". Paper presented in Federation of European Biochemical Societies, 2002.
    Published
  17. Fernandes, A.R.; Isabel Sá-Correia. "Transcription patterns of plasma membrane H+-ATPase encoding genes, PMA1 and PMA2, in cells of S. cerevisiae cultivated under respiratory or fermentative metabolism and during transition of the stationary phase". Paper presented in XXth International Conference on Yeast Genetics and Molecular Biology, Praga, 2001.
    Published
  18. Isabel Sá-Correia; Fernandes, A.R.. "Adaptative response in S. cerevisiae during high copper-stress-induced latency: Role of plasma membrane H+-ATPase". Paper presented in Federation of European Biochemical Societies, 2001.
    Published
  19. Nunes, P.A.; Tenreiro, S.; Teixeira, Miguel Cacho; Isabel Sá-Correia; Sá-Correia, I.. "Resistance and Adaptation to Quinidine in Saccharomyces cerevisiae: Role of QDR1 (YIL120w), Encoding a Plasma Membrane Transporter of the Major Facilitator Superfamily Required for Multidrug Resistance". Paper presented in Federation of European Biochemical Societies, 2001.
    10.1128/AAC.45.5.1528-1534.2001
  20. Tenreiro, S.; Brôco, N.; Simões, T.; Fernandes, A.R.; Moreira, L.M.; Isabel Sá-Correia. "Adaptation of S. cerevisiae to growth with benomyl involves the strong YAP1-dependent transcriptional activation of FLR1 gene, encoding a plasma membrane MFS-MDR transporter". Paper presented in Federation of European Biochemical Societies, 2001.
  21. Videira, P.A.; Fialho, A.M.; Geremia, R.; Breton, C.; Isabel Sá-Correia. "Biochemical characterisation of the beta-1-4-glucuronosyltransferase GelK in the gellan gum producing S. paucimobolis ATCC31461". Paper presented in Federation of European Biochemical Societies, 2001.
    Published
  22. Viegas, C.A.; Tenreiro, S.; Neves, M.S.; Nunes, P.A.; Teixeira, Miguel Cacho; Cabral, M.G.; Isabel Sá-Correia. "Role of ORF YNL065w (BZR1 gene), encoding a plasma membrane MFS transporter required for multidrug resistance, on S. cerevisiae adaptation to benzoic acid". Paper presented in Federation of European Biochemical Societies, 2001.
  23. Marques, A.R.; Videira, P.; Fialho, P.; Coutinho, P.; Isabel Sá-Correia. "Cloning and characterization of S. paucimobilis singular beta-glucosidase". Paper presented in Federation of European Biochemical Societies, 2001.
    Published
  24. Isabel Sá-Correia; Felder, T.; Tenreiro, S.; Breitenbach, M.; Briza, P.. "Biosynthesis of the yeast ascospore wall: Identification of a membrane transporter of dityrosine-containing spore wall precursors". Paper presented in XIX International Conference on Yeast Genetics and Molecular Biology, Rimini, 1999.
    Published
  25. Brôco, N.; Tenreiro, S.; Viegas, C.A.; Isabel Sá-Correia. "Pdr3 transcriptional regulator mediates benomyl-induced expression of FLR1 gene, encoding a transporter of the Major Facilitator Superfamily required for benomyl resistance in S. cerevisiae". Paper presented in XIX International Conference on Yeast Genetics and Molecular Biology, Rimini, 1999.
    Published
  26. Carmelo, V.; Bogaerts, P.; Isabel Sá-Correia. "Effects of extracellular acidification on the activity of yeast plasma membrane H+-ATPase and expression of PMA1 and PMA2 genes". Paper presented in 17th International Conference on Yeast Genetics and Molecular Biology, Lisbon, 1995.
    Published
  27. Viegas, C.A.; Sebastião, P.B.; Nunes, A.G.; Isabel Sá-Correia. "Activation of plasma membrane H(+)-ATPase and expression of PMA1 and PMA2 genes in Saccharomyces cerevisiae cells grown at supraoptimal temperatures". Paper presented in XVII International Conference on Yeast Genetics and Molecular Biology, Lisbon, 1995.
    Published
  28. Rosa, M.F.; Viegas, C.A.; Isabel Sá-Correia. "Toxicity of ethanol and octanoic acid and the intracellular acidification in S. cerevisiae". Paper presented in XVII International Conference on Yeast Genetics and Molecular Biology, Lisbon, 1995.
    Published
Journal article
  1. Mota, Marta N.; Matos, Madalena; Bahri, Nada; Sá-Correia, Isabel. "Shared and more specific genetic determinants and pathways underlying yeast tolerance to acetic, butyric, and octanoic acids". Microbial Cell Factories 23 1 (2024): http://dx.doi.org/10.1186/s12934-024-02309-0.
    10.1186/s12934-024-02309-0
  2. Antunes, Miguel; Kale, Deepika; Sychrová, Hana; Sá-Correia, Isabel. "The Hrk1 kinase is a determinant of acetic acid tolerance in yeast by modulating H+ and K+ homeostasis". Microbial Cell 10 12 (2023): 261-276. http://dx.doi.org/10.15698/mic2023.12.809.
    10.15698/mic2023.12.809
  3. Fernandes, Mónica A.; Mota, Marta N.; Faria, Nuno T.; Sá-Correia, Isabel. "An Evolved Strain of the Oleaginous Yeast Rhodotorula toruloides, Multi-Tolerant to the Major Inhibitors Present in Lignocellulosic Hydrolysates, Exhibits an Altered Cell Envelope". Journal of Fungi 9 11 (2023): 1073. http://dx.doi.org/10.3390/jof9111073.
    10.3390/jof9111073
  4. Teixeira, Miguel Cacho; Viana, Romeu; Palma, Margarida; Oliveira, Jorge; Galocha, Mónica; Mota, Marta Neves; Couceiro, Diogo; et al. "YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis". Nucleic Acids Research 51 D1 (2022): D785-D791. http://dx.doi.org/10.1093/nar/gkac1041.
    10.1093/nar/gkac1041
  5. Ribeiro, Ricardo A.; Bourbon-Melo, Nuno; Sá-Correia, Isabel. "The cell wall and the response and tolerance to stresses of biotechnological relevance in yeasts". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.953479.
    10.3389/fmicb.2022.953479
  6. Sanches-Fernandes, Gracinda M. M.; Sá-Correia, Isabel; Costa, Rodrigo. "Vibriosis Outbreaks in Aquaculture: Addressing Environmental and Public Health Concerns and Preventive Therapies Using Gilthead Seabream Farming as a Model System". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.904815.
    10.3389/fmicb.2022.904815
  7. Marta N. Mota; Paula Múgica; Isabel Sá-Correia. "Mota MN, Múgica P, Sá-Correia I, Exploring yeast diversity to produce lipid-based biofuels from agro-forestry and industrial organic residues, Journal of Fungi, 8(7), 687; 2022, https://doi.org/10.3390/jof8070687". Journal of Fungi 8 7 (2022): 687-687. https://doi.org/10.3390/jof8070687.
    10.3390/jof8070687
  8. Palma, Margarida; Vieira, Érica; Pataco, Margarida; Sá-Correia, Isabel. "Palma M, Vieira É, Pataco M, Sá-Correia I (2022) The characterization of a new Blastobotrys navarrensis strain indicate that this species is not a later synonym of Blastobotrys proliferans. I J Syst Evol Microbiol, 72(5), doi: 10.1099/ijsem.0.005388, https://doi.org/10.1099/ijsem.0.005388". International Journal of Systematic and Evolutionary Microbiology 72 5 (2022): http://dx.doi.org/10.1099/ijsem.0.005388.
    10.1099/ijsem.0.005388
  9. Isabel Sá-Correia; Cláudia P Godinho. "Sá-Correia I, Godinho CP, Exploring the biological function of efflux pumps for the development of superior industrial yeasts , Current Opinion in Biotechnology, Vol 74, 32-41 , 2022 https://doi.org/10.1016/j.copbio.2021.10.014". Current Opinion in Biotechnology (2022): https://doi.org/10.1016/j.copbio.2021.10.014.
    10.1016/j.copbio.2021.10.014
  10. Margarida Palma; Stephen Mondo; Mariana Pereira; Érica Vieira; Igor V. Grigoriev; Isabel Sá-Correia. "Palma M, Mondo S, Pereira M, Vieira É, Grigoriev IV, Sá-Correia I. (2022) Genome sequence and analysis of the flavinogenic yeast Candida membranifaciens IST 626, J Fungi 8(3):254, doi: 10.3390/jof8030254 , https://doi.org/10.3390/jof8030254". Journal of Fungi (2022): https://doi.org/10.3390/jof8030254.
    10.3390/jof8030254
  11. Ricardo A. Ribeiro; Cláudia P. Godinho; Miguel V. Vitorino; Tiago T. Robalo; Fábio Fernandes; Mário S. Rodrigues; Isabel Sá-Correia. "Crosstalk between Yeast Cell Plasma Membrane Ergosterol Content and Cell Wall Stiffness under Acetic Acid Stress Involving Pdr18". Journal of Fungi 8 2 (2022): 103-103. https://doi.org/10.3390/jof8020103.
    10.3390/jof8020103
  12. Perpelea, Andreea; Wijaya, Andy Wiranata; Martins, Luís C.; Rippert, Dorthe; Klein, Mathias; Angelov, Angel; Peltonen, Kaisa; et al. "¿ Perpelea, A, Wijaya, AW, Martins, LC, Rippert, D, Klein, M, Angelov A, Peltonen, K, Teleki A, Liebl W, Richard P, Thevelein, JM, Takors, R, Sá-Correia, I, Nevoigt E, Towards valorization of pectin-rich agro-industrial residues: Engineering of Saccharomyces cerevisiae for co-fermentation of D-galacturonic acid and glycerol, Metabolic Engineering, Vol 69, 2022, Pages 1-14, https://doi.org/10.1016/". Metabolic Engineering 69 (2022): 1-14. http://dx.doi.org/10.1016/j.ymben.2021.10.001.
    10.1016/j.ymben.2021.10.001
  13. Antunes, Miguel; Sá-Correia, Isabel. Corresponding author: Sá-Correia, Isabel. "Antunes M, Sá-Correia I, The NPR/Hal family of protein kinases in yeasts: biological role, phylogeny and regulation under environmental challenges, Computational and Structural Biotechnology Journal, Volume 20, 2022, Pages 5698-5712, 2022, https://doi.org/10.1016/j.csbj.2022.10.006". Computational and Structural Biotechnology Journal 20 (2022): 5698-5712. http://dx.doi.org/10.1016/j.csbj.2022.10.006.
    10.1016/j.csbj.2022.10.006
  14. Godinho, Cláudia P; Palma, Margarida; Oliveira, Jorge; Mota, Marta N; Antunes, Miguel; Teixeira, Miguel C; Monteiro, Pedro T; Sá-Correia, Isabel. "The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts". FEMS Yeast Research (2021): http://dx.doi.org/10.1093/femsyr/foab045.
    10.1093/femsyr/foab045
  15. Oliveira, Jorge; Antunes, Miguel; Godinho, Claudia P.; Teixeira, Miguel C.; Sá-Correia, Isabel; Monteiro, Pedro T.. "From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon". BMC Bioinformatics 22 1 (2021): http://dx.doi.org/10.1186/s12859-021-04312-3.
    10.1186/s12859-021-04312-3
  16. Ribeiro, Ricardo A.; Vitorino, Miguel V.; Godinho, Cláudia P.; Bourbon-Melo, Nuno; Robalo, Tiago T.; Fernandes, Fábio; Rodrigues, Mário S.; Sá-Correia, Isabel. "Yeast adaptive response to acetic acid stress involves structural alterations and increased stiffness of the cell wall". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-92069-3.
    10.1038/s41598-021-92069-3
  17. Luís Martins; Margarida Palma; Angel Angelov; Elke Nevoigt; Wolfgang Liebl; Isabel Sá-Correia. "Complete Utilization of the Major Carbon Sources Present in Sugar Beet Pulp Hydrolysates by the Oleaginous Red Yeasts Rhodotorula toruloides and R. mucilaginosa". Journal of Fungi (2021): https://doi.org/10.3390/jof7030215.
    10.3390/jof7030215
  18. Marta N. Mota; Luís C. Martins; Isabel Sá-Correia. "The Identification of Genetic Determinants of Methanol Tolerance in Yeast Suggests Differences in Methanol and Ethanol Toxicity Mechanisms and Candidates for Improved Methanol Tolerance Engineering". Journal of Fungi (2021): https://doi.org/10.3390/jof7020090.
    10.3390/jof7020090
  19. Bourbon-Melo, Nuno; Palma, Margarida; Rocha, Miguel Pinto; Ferreira, António; Bronze, Maria Rosário; Elias, Hugo; Sá-Correia, Isabel. "Use of Hanseniaspora guilliermondii and Hanseniaspora opuntiae to enhance the aromatic profile of beer in mixed-culture fermentation with Saccharomyces cerevisiae". Food Microbiology (2020): 103678. http://dx.doi.org/10.1016/j.fm.2020.103678.
    10.1016/j.fm.2020.103678
  20. Godinho, Cláudia P.; Costa, Rute; Sá-Correia, Isabel. "The ABC transporter Pdr18 is required for yeast thermotolerance due to its role in ergosterol transport and plasma membrane properties". Environmental Microbiology 23 1 (2020): 69-80. http://dx.doi.org/10.1111/1462-2920.15253.
    10.1111/1462-2920.15253
  21. Hassan, A. Amir; dos Santos, Sandra C.; Cooper, Vaughn S.; Sá-Correia, Isabel. "Comparative Evolutionary Patterns of Burkholderia cenocepacia and B. multivorans During Chronic Co-infection of a Cystic Fibrosis Patient Lung". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.574626.
    10.3389/fmicb.2020.574626
  22. Tavares, Mariana; Kozak, Mariya; Balola, Alexandra; Coutinho, Carla P.; Godinho, Cláudia P.; Hassan, A. Amir; Cooper, Vaughn S.; Sá-Correia, Isabel. "Adaptation and Survival of Burkholderia cepacia and B. contaminans During Long-Term Incubation in Saline Solutions Containing Benzalkonium Chloride". Frontiers in Bioengineering and Biotechnology 8 (2020): http://dx.doi.org/10.3389/fbioe.2020.00630.
    10.3389/fbioe.2020.00630
  23. Martins, Luís C.; Monteiro, Catarina C.; Semedo, Paula M.; Sá-Correia, Isabel. "Valorisation of pectin-rich agro-industrial residues by yeasts: potential and challenges". Applied Microbiology and Biotechnology 104 15 (2020): 6527-6547. http://dx.doi.org/10.1007/s00253-020-10697-7.
    10.1007/s00253-020-10697-7
  24. Tavares, Mariana; Kozak, Mariya; Balola, Alexandra; Sá-Correia, Isabel. "Burkholderia cepacia Complex Bacteria: a Feared Contamination Risk in Water-Based Pharmaceutical Products". Clinical Microbiology Reviews 33 3 (2020): http://dx.doi.org/10.1128/cmr.00139-19.
    10.1128/cmr.00139-19
  25. Hassan, A. Amir; Vitorino, Miguel V.; Robalo, Tiago; Rodrigues, Mário S.; Sá-Correia, Isabel. "Variation of Burkholderia cenocepacia cell wall morphology and mechanical properties during cystic fibrosis lung infection, assessed by atomic force microscopy". Scientific Reports 9 1 (2019): http://dx.doi.org/10.1038/s41598-019-52604-9.
    10.1038/s41598-019-52604-9
  26. Monteiro, Pedro T; Oliveira, Jorge; Pais, Pedro; Antunes, Miguel; Palma, Margarida; Cavalheiro, Mafalda; Galocha, Mónica; et al. "YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts". Nucleic Acids Research 48 D1 (2019): D642-D649. http://dx.doi.org/10.1093/nar/gkz859.
    10.1093/nar/gkz859
  27. Hassan, A. Amir; Coutinho, Carla P.; Sá-Correia, Isabel. "Burkholderia cepacia Complex Species Differ in the Frequency of Variation of the Lipopolysaccharide O-Antigen Expression During Cystic Fibrosis Chronic Respiratory Infection". Frontiers in Cellular and Infection Microbiology 9 (2019): http://dx.doi.org/10.3389/fcimb.2019.00273.
    10.3389/fcimb.2019.00273
  28. Cunha, Joana T; Romani, Aloia; Costa, Carlos E; Sa-Correia, Isabel; Domingues, Lucilia. "Molecular and physiological basis of Saccharomyces cerevisiae tolerance to adverse lignocellulose-based process conditions.". Applied microbiology and biotechnology (2018): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:30397768&KeyUID=MEDLINE:30397768.
    10.1007/s00253-018-9478-3
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Journal issue
  1. Isabel Sá-Correia; Naseem A. Gaur. "Special Issue "Yeast Biorefineries" for Journal of Fungi, Guest editor (14 papers) ; https://www.mdpi.com/journal/jof/special_issues/Yeast_Biorefineries Journal scientific committee done between 2020 and 2021". Journal Fungi (2021): https://www.mdpi.com/journal/jof/special_issues/Yeast_Biorefineries.
    Published
  2. Isabel Sá-Correia; Ed Louis. "Special Topic: Functional and Comparative Genomics of Saccharomyces and non-Saccharomyces Yeasts: Potential for Industrial and Food Biotechnology, edited by Isabel Sá-Correia and Ed Louis, PUBLISHED in Frontiers in Genetics and Frontiers in Microbiology (area: Evolutionary and Genomic Microbiology) (18 articles). https://www.frontiersin.org/research-topics/7243/". (2020):
  3. Isabel Sá-Correia; Teixeira, Miguel Cacho; Duque, Paula; Ferreira. "Research Topic : "Physiological role and regulation of Multidrug/Multixenobiotic resistance membrane transporters" for Frontiers in Physiology - Membrane Physiology and Biophysics Section (Edited by Isabel Sá-Correia, M C Teixeira, P Duque, .7 articles); https://www.frontiersin.org/research-topics/1832/physiological-role-and-regulation-of-multidrugmultixenobiotic-resistance-membrane-transporters". (2014):
  4. Isabel Sá-Correia. "Special issue of BIOCATALYSIS AND BIOTRANSFORMATION Volume: 30 Issue, in the context of the 9th Carbohydrate Bioengineering Meeting, Lisbon, Portugal (Fontes, CMGA, Sa-Correia I, Romão MJ, Sa-Nogueira I, Prates JAM, Ferreira, L:M.A..) DOI: 10.3109/10242422. 2012.681858 Published: MAY 2012". (2012):
  5. Isabel Sá-Correia. "OMICS: A JOURNAL OF INTEGRATIVE BIOLOGY - Special Issue on "Yeasts", Volume: 14 Issue 6: November 29, 2010, edited by Isabel Sá-Correia". (2010):
  6. Isabel Sá-Correia. "OMICS: A JOURNAL OF INTEGRATIVE BIOLOGY - Special Issue on "Response to Stress in Yeasts", Volume: 14 Issue 6: November 29, 2010, edited by Isabel Sá-Correia". (2010):
Magazine article
  1. Teixeira, Miguel Cacho; Cabrito, Tânia Rodrigues; Brazão, João; Isabel Sá-Correia. "Teixeira MC, Cabrito TR, Brazão J, Sá-Correia I. "Yeast as model eukaryote and expression host system: is it still useful?" Magazine SPM, 2013", Magazine SPM, 2013, http://www.spmicrobiologia.pt/.
  2. E. Silva; Isabel Sá-Correia; A. M. Fialho. "Despoluição biológica de ambientes contaminados com o herbicida atrazina, Boletim de Biotecnologia, 82, 13-27, 2006", Boletim de Biotecnologia, 2006, https://www.spbt.pt/#bulletins.
  3. Teixeira, Miguel Cacho; Monteiro, P.; Jain, P.; Tenreiro, S.; Fernandes, A.R.; Mira, N.P.; Alenquer, M.; et al. "A Bioinformática e as Bases de Dados: o exemplo de uma Base de Dados para Análise de Mecanismos de Regulação em Levedura", Boletim da Biotecnologia, 2005, https://www.spbt.pt/#bulletins.
  4. Santos, P.M.; Teixeira, Miguel Cacho; Isabel Sá-Correia. "A Análise Proteómica Quantitativa na Revelação de Mecanismos de Resposta a stresse químico em microrganismos.", Boletim de Biotecnologia, 2004, https://www.spbt.pt/#bulletins.
  5. Isabel Sá-Correia; Tenreiro, S.; Nunes, P.; Viegas, C.A.; Brôco, N.; Rosa, P.C.. "Resistência a múltiplas drogas em S. cerevisiae: uma abordagem pós-genómica.", Boletim de Biotecnologia, 2000, https://www.spbt.pt/#bulletins.
  6. Leitão, J.H.; Barreto, C.; Richau, J.A.; Tavares, I.M.; de Nápoles, M.M.; Lito, L.; Salgado, M.J.; Isabel Sá-Correia. "Pseudomonas aeruginosa e Burkholderia cepacia nas infecções crónicas de doentes com Fibrose Quística: tipagem molecular de isolados e papel dos exopolissacáridos sintetizados.", Boletim de Biotecnologia, 1998, https://www.spbt.pt/#bulletins.
  7. Isabel Sá-Correia. "Molecular physiology of yeast. Transmembrane transport: what's new and how it can be applied.", IST Science & Tecnology, 1998, https://tecnico.ulisboa.pt/en/news/science-technology/.
  8. Viegas, C.A.; Tenreiro, S.; Fernandes, A.; Soares, L.M.; Santos, R.; Isabel Sá-Correia. "Transporte Transmembranar de Solutos na Levedura: o que há de novo e como aplicá-lo?", Boletim de Biotecnologia, 1997, https://www.spbt.pt/#bulletins.
  9. Moreira, L.; Leitao, J.H.; Isabel Sá-Correia. "Perfis de DNA: o Bilhete de Identidade para bactérias? Aplicações na Indústria Biotecnológica - Alimentar, em Ecologia e em Epidemiologia.", Boletim de Biotecnologia, 1994, https://www.spbt.pt/#bulletins.
  10. Isabel Sá-Correia. "Fermentações por Bactérias com DNA Recombinado, Boletim de Biotecnologia, 44, 3-10, 1992", Boletim de Biotecnologia, 1992, https://www.spbt.pt/#bulletins.
  11. Isabel Sá-Correia. "Gomas Microbianas: Genética e Fisiologia da sua Biossíntese, Boletim de Biotecnologia,41, 12-14, 1989", Boletim de Biotecnologia, 1989, https://www.spbt.pt/#bulletins.
Newspaper article
  1. Isabel Sá-Correia. "Uma plataforma mundial para a divulgação da Microbiologia com origem em Portugal, Isabel Sá-Correia, Jornal i online, artigo de opinião de 13 de setembro de 2022;, https://www.agroportal.pt/uma-plataforma-mundial-para-a-divulgacao-da-microbiologia-com-origem-em-portugal/", jornal i, 2022, https://www.agroportal.pt/uma-plataforma-mundial-para-a-divulgacao-da-microbiologia-com-origem-em-portugal/.
  2. Isabel Sá-Correia. "Porquê fazer um doutoramento? Porquê contratar um doutorado?, Jornal i online, Isabel Sá-Correia, 10 Maio, 2022", Jornal i online, 2022, https://ionline.sapo.pt/artigo/770726/porqu-fazer-um-doutoramento-porqu-contratar-um-doutorado-?seccao=Opiniao_i.
  3. Costa, Rodrigo; Isabel Sá-Correia. "Microbiologia Azul: Pilar da Bioeconomia do mar, Jornal i online, artigo de opinião de 11 de Janeiro de 2022", 2022, https://ionline.sapo.pt/artigo/758885/microbiologia-azul-pilar-da-bioeconomia-do-mar?seccao=Opiniao_ihttps://ionline.sapo.pt/artigo/758885/microbiologia-azul-pilar-da-bioeconomia-do-mar?seccao=Opiniao_i.
  4. Isabel Sá-Correia. "Porque razão os Microrganismos têm o seu dia internacional? Jornal i online, artigo de opinião de 14 de Setembro 2021?; https://ionline.sapo.pt/artigo/746282/por-que-razao-os-microrganismos-t-m-o-seu-dia-internacional-?seccao=Opiniao_i", 2021, https://ionline.sapo.pt/artigo/746282/por-que-razao-os-microrganismos-t-m-o-seu-dia-internacional-?seccao=Opiniao_i.
  5. Isabel Sá-Correia. "Os biocombustíveis líquidos avançados e as leveduras, Isabel Sá-Correia, jornal i online de 13 Abril 2021 ; https://ionline.sapo.pt/artigo/731136/-os-biocombustiveis-liquidos-avancados-e-as-leveduras?seccao=Opiniao_i", jornal i, 2021, https://ionline.sapo.pt/artigo/731136/-os-biocombustiveis-liquidos-avancados-e-as-leveduras?seccao=Opini%C3%A3o_i.
  6. Isabel Sá-Correia. "As biorrefinarias, a economia circular e a microbiologia; Isabel Sá-Correia, jornal i online de 16 de Março de 2021, https://ionline.sapo.pt/artigo/728099/-as-biorrefinarias-a-economia-circular-e-a-microbiologia?seccao=Opiniao_i", Jornal i, 2021, https://ionline.sapo.pt/artigo/728099/-as-biorrefinarias-a-economia-circular-e-a-microbiologia?seccao=Opini%C3%A3o_i.
  7. Isabel Sá-Correia. "Diversidade, sim, importa!, Isabel Sá-Correia, jornal i online de 26 de Janeiro de 2021, artigo de opinião; https://ionline.sapo.pt/artigo/722405/-diversidade-sim-importa-?seccao=Opiniao_i", 2021, https://ionline.sapo.pt/artigo/722405/-diversidade-sim-importa-?seccao=Opiniao_i.
  8. Isabel Sá-Correia. "O conhecimento científico em tempo de covid-19 e para além deste, Jornal i, artigo de opinião; https://ionline.sapo.pt/artigo/697914/o-conhecimento-cientifico-em-tempo-de-covid-19-e-para-alem-deste?seccao=Opini%C3%A3o_i", Jornal i, 2020, https://ionline.sapo.pt/artigo/697914/o-conhecimento-cientifico-em-tempo-de-covid-19-e-para-alem-deste?seccao=Opini%C3%A3o_i.
  9. Isabel Sá-Correia. "O porquê de uma formação em Biologia nos cursos de Engenharia, Isabel Sá-Correia, Jornal i online, 24 December, 2019:", Jornal i, 2019, https://ionline.sapo.pt/artigo/681018/-o-porqu-de-uma-formacao-em-biologia-nos-cursos-de-engenharia?seccao=Opini%C3%A3o_i.
Online resource
  1. Isabel Sá-Correia; Monteiro, P.T.; Jorge Oliveira; P. Pais; M. Antunes; M. Palma; M. Cavalheiro,; et al. CommunityYeastract database (http://yeastract-plus.org/community/)) offers a platform for the creation, use, and future update of YEASTRACT-like databases for any yeast of the users¿ choice. CommunityYeastract currently provides information for two Saccharomyces boulardii strains, Rhodotorula toruloides NP11 oleaginous yeast, and Schizosaccharomyces pombe 972h http://yeastract-plus.org/community/. 2020. http://yeastract-plus.org/community/.
  2. Isabel Sá-Correia; Cláudia P. Godinho; Margarida Palma,; Jorge Oliveira; Marta N Mota; Miguel Antunes; Miguel C Teixeira; Pedro T Monteiro. N.C. Yeastract (Non-Conventional Yeast Search for Transcriptional Regulators And Consensus Tracking) http://yeastract-plus.org/ncye is a curated repository of all known regulatory associations between transcription factors and target genes in non-conventional yeast species of Biotechnological relevance: Z. bailii, Kluyveromyces marxianus, K. lactis, Komagataella phaffii and Yarrowia lipolytica.. 2020. http://yeastract-plus.org/ncye doi:10.1093/femsyr/foab045 doi:10.1093/nar/gkac1041.
  3. Isabel Sá-Correia; P.T. Monteiro; J. Oliveira, ; P. Pais, ; M. Antunes†; Teixeira, Miguel C. YEASTRACT+ (http://YEASTRACT-PLUS.org/) is an information system originated on YEASTRACT for cross-species comparative genomics of transcription regulation in yeasts. Integrates YEASTRACT (http://www.yeastract.com/), PathoYeastract (http://pathoyeastract.org/) databases and the NCYeastract (Non-Conventional Yeastract) database (http://ncyeastract.org/), focused on Biotec relevant yeasts. 2020. http://YEASTRACT-PLUS.org/.
  4. Teixeira, Miguel Cacho; Monteiro, P.; Jain, P.; Tenreiro, S.; Fernandes, A.R.; Mira, N.P.; Alenquer, M.; Oliveira, A.L.; Isabel Sá-Correia. YEASTRACT database http://www.yeastract.com (regularly manually curated and updated to YEASTRACT+ http://yeastract-plus.org/ . Yeastract+ is described in the NAR Database Issue of 2020: https://doi.org/10.1093/nar/gkz859 ). 2006. http://www.yeastract.com, http://yeastract-plus.org/ , https://doi.org/10.1093/nar/gkz859.
Preface / Postscript
  1. Isabel Sá-Correia; Ed Louis. "Editorial of a special issue: Isabel Sá-Correia and Ed Louis published In: eBook: Sá-Correia, I., Louis, E., eds. (2020). Functional and Comparative Genomics of Saccharomyces and non-Saccharomyces Yeasts: Potential for Industrial and Food Biotechnology. Lausanne: Frontiers Media SA. doi: 10.3389/978-2-88963-522-". 2020.
  2. Isabel Sá-Correia. "Carlos M. G. A. Fontes, Isabel Sá Correia, Maria João Romão, Isabel Sá-Nogueira, José A. M. Prates & Luís M. A. Ferreira (2012) EDITORIAL, Biocatalysis and Biotransformation, 30:3, 273, DOI: 10.3109/10242422.2012.681858". 2012.
  3. Isabel Sá-Correia. "Editorial-Response to Stress in Yeasts, Special Issue "Response to Stress in Yeasts for OMICS: A JOURNAL OF INTEGRATIVE BIOLOGY (editor: Isabel Sá-Correia) "https://doi.org/10.1089/omi.2010.00ed". Preface to Special Issue "Response to Stress in Yeasts for OMICS: A JOURNAL OF INTEGRATIVE BIOLOGY "https://doi.org/10.1089/omi.2010.00ed. 2010.
    Published
Thesis / Dissertation
  1. Isabel Sá-Correia. "Bioconversão de amido e inulina por levedura: produção de biomassa e de etanol". PhD, Universidade de Lisboa Instituto Superior Técnico, 1984.

Intellectual property

Patent
  1. Isabel Sá-Correia; Cabrito, T.R.; Teixeira, Miguel Cacho; Remy, E.; Duque, P.. 2013. "Utilização de um gene que confere resistência a xenobióticos em plantas". Portugal.
    Allowed
  2. Isabel Sá-Correia; Novais, J.M.; Cabral, J.M.S.; Cadete, M.; Loureiro, V.. 1992. "Processo para a Produção de Vinhos Espumantes Naturais com Leveduras Imobilizadas/ PROCESS FOR THE PRODUCTION OF NATURAL SPARKLING WINES BY MEANS OF IMMOBILIZED YEAST". Portugal.
    Expired
Provisional application for patent
  1. 1999. "Biological Material Transfer Agreement to an international company: Sphingomonas paucimobilis producing gellan polymers with variation at the level of substitution of acetyl and glyceryl".

Other

Annotation
  1. Isabel Sá-Correia; Margarida Palma; Stephen Mondo; Igor V. Grigoriev; Mariana Pereira; Érica Vieira. 2022. "Genome Sequence and Annotation of the Flavinogenic Yeast Candida membranifaciens IST 626, The sequencing reads were deposited in Sequence Read Archive (SRA) under the accession number PRJNA777779, and the sequences obtained in the genome assembly were deposited in GenBank under the accession number JAKQXL000000000.".
  2. A. Amir Hassan; Sandra dos Santos; Cooper, Vaughn; Isabel Sá-Correia. 2020. "Fully assembled and annotated genome of B. cenocepacia IST439 obtained by PacBio Sequencing available at the EMBL¿s European Nucleotide Archive (ENA) under accession number ERZ1345975.".
  3. A. Amir Hassan; Sandra dos Santos; Cooper, Vaughn; Isabel Sá-Correia. 2020. "The genome sequences obtained by Illumina sequencing for all the sequential isolates from B cenocepacia and B multivorans isolated from cystic fibrosis patients are compared in https://doi.org/10.3389/fmicb.2020.574626 and are available at the EMBL¿s European Nucleotide Archive (ENA) under accession numbers PRJEB20052 and PRJEB35836.".
  4. Isabel Sá-Correia; Margarida Palma; Martin Münsterkötter; João Peça; Ulrich Güldener. 2017. "Genome sequence and annotation of the highly weak-acid-tolerant Zygosaccharomyces bailii IST302, amenable to genetic manipulations and physiological studies; The sequencing reads were deposited in Sequence Read Archive (SRA) under the accession number PRJNA777779, and the sequences obtained in the genome assembly were deposited in GenBank under the accession number JAKQXL000000000.".
  5. Isabel Sá-Correia; Mira, Nuno Pereira; Martin Münsterkötter; Dias-Valada, Filipa; Júlia Santos ; Margarida Palma; Filipa C Roque ; et al. 2014. "The genome sequence and annotation of the highly acetic acid-tolerant Zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant ,The sequence and annotation of the genome of the ISA1307 strain disclosed in this study are accessible at http://pedant.helmholtz-muenchen.de/genomes.jsp?Category=fungal, including browsing by a GBrowse instance".
Other output
  1. Nucleotide sequences deposited in Genbank; OQ092424: Candida boidinii IST 605 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Margarida Palma; Marta N. Mota; Isabel Sá-Correia.
  2. Nucleotide sequences deposited in Genbank; OQ092423: Candida boidinii IST 600 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  3. Nucleotide sequences deposited in Genbank; OQ092422: Candida boidinii IST 599 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  4. Nucleotide sequences deposited in Genbank; OQ092421: Candida boidinii IST 592 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  5. Nucleotide sequences deposited in Genbank; OQ092420: Candida boidinii IST 509 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  6. Nucleotide sequences deposited in Genbank OQ092419: Candida boidinii IST 473 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  7. Nucleotide sequence deposited in Genbank OQ092418: Candida boidinii IST 350 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  8. Nucleotide sequences deposited in Genbank OQ064240: Candida boidinii IST 350 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  9. Nucleotide sequences deposited in Genbank OQ064241: Candida boidinii IST 473 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  10. Nucleotide sequence deposited in Genbank; OQ064242: Candida boidinii IST 509 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  11. Nucleotide sequence deposited in Genbank; OQ064243: Candida boidinii IST 592 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  12. Nucleotide sequence deposited in Genbank; OQ064244: Candida boidinii IST 599 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  13. Nucleotide sequence deposited in Genbank ; OQ064246: Candida boidinii IST 605 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  14. Nucleotide sequence deposited in Genbank; OQ064245: Candida boidinii IST 600 26S large subunit ribosomal RNA gene, partial sequence. Authors: Margarida Palma, Marta Mota, Isabel Sá-Correia. 2022. Isabel Sá-Correia.
  15. Pseudomonas sp. M1 phenol hydroxylase subunit (pbcP), phenol hydroxylase subunit (pbcO), phenol hydroxylase subunit (pbcN), phenol hydroxylase subunit (pbcM), phenol hydroxylase subunit (pbcL), phenol hydroxylase subunit (pbcK), transcriptional regulator (pbcR), and catechol 1,2-dioxygenase (pbcA) genes, complete cds. 2007. Isabel Sá-Correia; Santos PM.
    10.1016/j.jbiotec.2007.07.941
  16. GenBank database - Pseudomonas sp. M1 16S ribosomal RNA gene, partial sequence,. 2005. Isabel Sá-Correia; Santos PM.
  17. GenBank database - Burkholderia cenocepacia strain IST432 undecaprenyl-phosphate glucosyl-1-phosphate transferase precursor (bceB) gene, promoter region and complete cds. 2003. Isabel Sá-Correia; PA Videira.
    10.1016/j.bbrc.2003.10.118
  18. GenBank database - S. elodea UDP-N-acetyl-D-mannosaminuronate dehydrogenase gene, partial cds; UDP-N-acetylglucosamine-2-epimerase, glucose-1-phosphate uridylyltransferase (ugpG), and UDP-glucose/GDP-mannose dehydrogenase genes, complete cds. 2003. Isabel Sá-Correia; ESilva; AR,Marques; AM Fialho; AT Granja.
    10.1007/s00438-003-0805-7
  19. GenBank database - S. paucimobilis beta-glucosidase gene, complete cds. 2003. Isabel Sá-Correia; AR,Marques; AM Fialho.
    10.1042/BJ20021249
  20. GenBank database - S. elodea esterase gene, complete cds. 2003. Isabel Sá-Correia; PA Videira; AR,Marques; AM Fialho.
    10.1007/s00253-003-1226-6
  21. GenBank database - S. paucimobilis TDP-glucose pyrophosphorylase gene, complete cds. 2003. Isabel Sá-Correia; E, Silva; AM Fialho.
  22. GenBank database - S. paucimobilis UDP glucose pyrophosphorylase (ugpG) gene, complete cds. 2003. Isabel Sá-Correia; AR Marques,; PM Ferreira; AM Fialho,.
    10.1007/s00438-003-0805-7
  23. GenBank database - S. elodea gellan polysaccharide biosynthesis (gelF), GelD (gelD), GelC (gelC), GelE (gelE), putative membrane protein, and putative exported protein genes, complete cds. 2002. Isabel Sá-Correia; LM Moreira; H Albano.
    10.1038/sj.jim.7000266
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023/02/07 Sá-Correia, I, Última aula, "As Ciências Biológicas numa Escola de Engenharia", Centro de Congressos do Instituto Superior Técnico.
2022/10/08 Sá-Correia I, Distinguished Seminar "Yeast Advanced Biorefineries: the Microbiologist´s view", at IMDEA Energy, Madrid
2022/10/05 Sá-Correia, I, "The dual role of Acetic Acid in Yeast Cell Factories" , at IMDEA Energy, Madrid
2022/09/23 Sá-Correia I, Four decades of Biological Sciences at IST; 2nd iBB Meeting, Centro de Congressos, Instituto Superior Técnico
2022/09/16 Sá-Correia, I, O Dia Internacional do Microrganismo: de Portugal para o Mundo, Conferência: "Microrganismos e Desenvolvimento Sustentável", Academia das Ciências de Lisboa
2022/06/07 Sá-Correia I, Bioeconomia circular e sustentabilidade, Conference: Ciência e Cultura "50 anos depois da conferência de Estocolmo", Academia das Ciências de Lisboa.
2021/11/26 Sá-Correia, I, Four decades in the company of yeasts, van Uden´s Conference, Microbiotec 2021, 26 Nov, 2021, Congress of the Portuguese Society of Microbiology and Portuguese Society of Biotechnology.
Microbiotec 2021, Portuguese Society of Microbiology and Portuguese Society of Biotechnology. (Portugal)
2019/06/27 Sá-Correia, I, Physiological Genomics of the response and tolerance of yeasts to industrially relevant stresses, Speaker, PYFF7-7th Conference on Physiology of Yeast and Filamentous Fungi, Milan, Italy, 24-27 June, 2019 PYFF7-7th Conference on Physiology of Yeast and Filamentous Fungi
(Milan, Italy)
2019/06/06 Sá-Correia, I, Microbiologia para Todos (Microbiology for All), Academic Session of 6th june, 2019, Academia das Ciências de Lisboa Academic Session, Academia das Ciências de Lisboa
Academia das Ciências de Lisboa (Lisboa, Portugal)
2018/05 Global adaptive responses to acetic acid stress in the highly weak acid resistant spoilage yeast Zygosaccharomyces bailii, Invited speaker, International Conference Non-Conventional Yeasts: from Basic Research to Application, Rzeszow, Poland International Conference Non-Conventional Yeasts: from Basic Research to Application
University of Rzeszow (Rzeszow, Poland)
2017/07 Yeast Physiological Toxicogenomics: Instrumental To Guide The Development Of Robust Cell Factories, Invited speaker during the FEMS Congress 2017, 9-13 July, 2017, Valencia, Spain FEMS Congress 2017
FEMS (Valencia, Spain)
2016/09 Physiological genomics of the adaptive response and tolerance to weak acid stress in yeasts, Keynote speaker (plenary talk) ICY14 (14th International Congress on Yeasts), September 11-15, 2016, Awaji Island, Japan ICY14 (14th International Congress on Yeasts)
ICY International Commission on Yeasts (Awaji Island, Japan)
2016/05 Resposta e resistência a stress: o poder das análises à escala do genoma e do sistema microbiano (Response and resistance to stress: the power of the approaches at the genome and microbial systems levels), Academic Session of May 19, 2016, Academia das Ciências de Lisboa Academic session, Academia das Ciências de Lisboa
Academia das Ciências de Lisboa (Lisbon, Portugal)
2014/10 Physiological Genomics of Yeast Response and Resistance to Stress, Invited speaker-Plenary talk , The joint meeting of the Society of General and Applied Microbiology (VAAM) and the German Society for Hygiene and Microbiology (DGHM), Dresden, Germany Joint meeting of the Society of General and Applied Microbiology (VAAM) and the German Society for Hygiene and Microbiology (DGHM)
Society of General and Applied Microbiology (VAAM) and German Society for Hygiene and Microbiology (Dresden, Germany)
2013/07 Toward a systems-based understanding of the yeast response and tolerance to acetic acid , Invited speaker, FEMS 2013, Congress (YEAST AND FOOD MICROBIOLOGY Symposium), 21-25 July, 2013, Leipzig, Germany. FEMS Congress 2013
FEMS (Leipzig, Germany)
2013/06 Genomics of adaptation to the lung; session: Burkholderia cepacia complex: still a problem? Invited Speaker. 36th European Cystic Fibrosis Conference, June 12 – 15, 2013, Lisbon, Portugal 36th European Cystic Fibrosis Conference
European Cystic Fibrosis Society (Lisbon, Portugal)
2012/11 Systems-based understanding of chemical stress defense mechanisms in yeast: challenges and opportunities, António V. Xavier Seminars, ITQB, Oeiras António V. Xavier Seminars
ITQB (Oeiras, Portugal)
2011/03 Chemical stress defense mechanisms in the Yeast model: molecular systems-biology approach, 14ª edição Portugaliae Genética (Model Organisms: Humans et al.) IPATIMUP, May 2011, Porto 14ª edição Portugaliae Genética (Model Organisms: Humans et al.)
IPATIMUP (Porto, Portugal)
2010/10 Microbial Toxicoproteomics, Invited Speaker,The 4th EuPA Meeting hold conjointly with The 6th ProCuraMeeting, 23 to 27 October 2010, in Estoril, Portugal. The 4th EuPa (EUropean Proteomics Association) Meeting and the 6th ProCura Meeting, 201'0: A Proteomics Odyssey towards next decades
(Estoril, Portugal)
2010/06 Role and regulation of yeast plasma membrane exporters in chemical stress defence, Invited speaker, 4th Conference on Physiology of Yeast and Filamentous Fungi (PYFF4), Rotterdam, The Netherlands., June, 2010 4th Conference on Physiology of Yeast and Filamentous Fungi (PYFF4)
(Rotterdam, Netherlands)
2009/09 Quantitative Proteomics: a tool to reveal the complexity of microbial responses to stress, Invited Speaker, 1st International Congress on Analytical Proteomics, Caparica, Portugal 1st International Congress on Analytical Proteomics
(Caparica, Portugal)
2009/07 Genome-wide requirements for maximum tolerance to ethanol and weak acids in Saccharomyces cerevisiae, Invited Speaker, The 25th International Conference on Yeast Genetics & Molecular Biology, Manchester, July, 2009. The 25th International Conference on Yeast Genetics & Molecular Biology
(Manchester)
2004/05 Yeast responses to stress induced by the herbicide 2,4-D revealed through post-genomic approaches, invited speaker, Conference "Integrating Metabolism and Genomics", ASM-American Society for Microbiology, May 2004, Montreal, Canada Integrating Metabolism and Genomics
American Society for Microbiology (Montreal, Canada)
2001/07 Genomic-oriented studies on multidrug resistance in yeast: functional analysis of MFS-MDR transporters, Invited speaker, 10th European Congress on Biotechnology, Madrid 10th European Congress on Biotechnology
European Federation of Biotechnology (Madrid, Spain)
2001 Biosynthesis of exopolysaccharides of biotechnological and medical relevance in Pseudomonads, invited speaker, 11 th European Carbohydrate Symposium, Lisboa 11th European Carbohydrate Symposium
Eurocarb (Lisboa, Portugal)
2000/09 Multiple-drug resistance in S. cerevisiae: a post-genomic approach, keynote speaker, XII National Congress of Biochemistry, van Uden Conference, opening session, Póvoa do Varzim, September, 2000 XII Congresso Nacional de Bioquímica; Conferência Van Uden, opening conference
Sociedade Portuguesa de Bioquímica (Póvoa do Varzim, Portugal)
1995/02 Environmental modulation of gellan and alginate biosynthetic pathways, Invited Speaker, 7th European Congress on Biotechnology, Nice 7th European Congress on Biotechnology
European Federation of Biotechnology (Nice, France)
1994 Bacterial exopolysaccharides: biosynthesis and modification BIOTEC' 94, II Congresso Ibérico de Biotecnologia
Sociedades Portuguesa e Espanhola de Biotecnologia (Vilamoura, Portugal)
1993/06 Manipulation of alginate and gellan gum pathways by recombinant DNA technology 6th European Congress on Biotechnology
European Federation of Biotechnology (Firenze, Italy)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2022/09 - Current MSc Thesis in Microbiology, "Production of lipids by the yeast Rhodotorula toruloides based on lignocellulosic biomass hydrolysates", Mónica Alves Fernandes
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019/02 - Current "Methanol and acetic acid tolerance and catabolism in oleaginous yeasts towards sustainable biorefineries", Marta Neves Mota. PhD in Biotechnolgy and Biosciences, IST-ULisboa, ongoing since Feb 2019
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - Current "Mechanisms of Yeast Adaptation and Tolerance to Acetic Acid Stress: physiological genomic approaches and genotype-phenotype associations", Jorge Miguel Figueiredo Antunes , PhD thesis in Biotechnology and Biosciences
Supervisor
 Biotechnology and Biociences, PhD (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/10/01 - 2022/10/12 Yeast adaptive response and tolerance to acetic acid stress: focus on the cell envelope, Ricardo Aguilar Andrade Ribeiro, PhD Biotechnology and Biosciences, IST ULisboa, October, 12, 2022
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/05/11 - 2022/07/13 Graduation Thesis "Identification of the genes involved in the tolerance of Saccharomyces cerevisiae to acetic, butyric, and octanoic acids"., Nada Bahri, graduation in Biology, option Food Industry at the Institute of Technology of Dijon, France 11/05/2022 ¿ 13/07/2022,
Supervisor
 Nada Bahri (Degree)
2018/02 - 2022/03/10 Post-doctoral programme, ERA-NET industrial biotechnology project YEASTPEC - engineering of the yeast Saccharomyces cerevisiae for bioconversion of pectin-containing agro-industrial side-streams, Cláudia Sofia Pires Godinho, since 2018 to March 2022
Supervisor of Cláudia Sofia Pires Godinho
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2020/09/15 - 2021/12/07 "Selection of promising non-conventional yeast strains for the production of added-value bioproducts from forest and agro-industrial residues", MSc Thesis in Microbiology of Xavier Henrique Correia Diaz, 2021.
Supervisor
2016 - 2021/05 Valorisation of pectin-rich agro-industrial residues by yeasts: potential and challenges , Luís Miguel Candeias Martins, PhD thesis in Biotechnology and Biosciences, 2021
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 - 2020/07/15 Taxonomy, morphology, physiology and DNA content of a new Blastobotrys yeast species with potential applications in Biotechnology, Érica Torrico Vieira, MSc in Biotechnology, IST-ULisboa, 2020
Co-supervisor
2019 - 2020/07/02 Isolation and Identification of oleaginous yeasts , Margarida Dos Reis Pereira Pataco, MSc in Biotechnology, IST-ULisboa, 2020
Supervisor
 Biotechnology (Master)
2016 - 2020/04/15 “Production of first-and second-generation bioethanol by yeasts: global warming potential and fermentation productivity issues”, RUI CRUZ PACHECO, PhD thesis in Biotechnology and Biosciences, IST-ULisboa, 2020
Co-supervisor of RUI CRUZ PACHECO
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015/09/01 - 2020/01/28 Adaptation of Burkholderia cepacian complex bacteria to the cystic fibrosis lung: focus on lipopolysaccharide O-antigen and cell wall physical properties, A. Amir Hassan, PhD in Biotechnology and Biosciences, IST-ULisboa, 2020
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09/01 - 2019/12 Use of Hanseniaspora opuntiae in co-fermentation with Saccharomyces cerevisiae to enhance the aromatic profile of craft beer, Miguel Pinto Rocha, MSc Biotechnology, IST ULisboa, 2019
Co-supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09 - 2019/12 Molecular characterization of new Saccharomyces cerevisiae isolates and analysis of their potential in craft beer fermentation, Pedro Miguel Monteiro Bonifácio, MSc Biotechnology, IST ULisboa, 2019
Co-supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09 - 2019/12 Bioconversion of single- and mixed- sugars present in sugar beet pulp hydrolysates by non-conventional yeasts, Paula Alexandra Mateus Semedo, MSc Biotechnology, 2019
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09 - 2019/12 ABC Transporter Pdr18 is a Determinant of Yeast Thermo and Osmo Tolerance: underlying mechanisms and biotechnological implication, Rute Isabel Ribeiro Costa, MSc Biotechnology, IST ULisboa, 2019
Co-supervisor of Rute Cota
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09 - 2019/12 Potential of non-conventional yeasts for the production of added-value products from sugar beet pulp, Catarina Costa Monteiro, MSc Biotechnology, IST ULisboa, 2019
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018/09 - 2019/12 Adaptation and survival of Burkholderia cepacia and Burkholderia contaminans in saline solutions containing benzalkonium chloride: impact on microbiological quality of pharmaceuticals. Mariana Belez Silva Tavares. MSc in Biotechnology, IST-ULisboa, 2019
Supervisor of Mariana Belez Silva Tavares
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 - 2019 Post-doctoral programme: Burkholderia cepacia complex cell surface determinants of virulence as targets for new therapeutics in cystic fibrosis, Carla Patrícia da Silva Coutinho
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2011 - 2019 Post-doctoral programme: Adaptation and tolerance to relevant stresses in Saccharomyces cerevisiae and Zygosaccharomyces bailii biology and biotechnology, Margarida Isabel Rosa Bento Palma, 2011-2019
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2011 - 2019 Post-doctoral programme: Multi-resistance to chemical stresses - studies using the yeast model and functional genomics strategies, Paulo J Dias,
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2017/09/01 - 2018/12/31 Burkholderia cepacia complex bacteria as contaminants of sterile saline solutions containing benzalkonium: phenotypic characterization of emerging clonal variants , Alexandra Sofia Matoso Balola , MSc in Biotechnology, IST ULisboa, 2018
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/09 - 2018/12 Long-term survival and phenotypic variation of Burkholderia cepacia complex bacteria in saline solutions with or without benzalkonium and direct molecular detection of these bacteria, Mariya Kozak MSc in Microbiology, IST ULisboa, 2018
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/09/01 - 2018/11/30 Yeast toxicogenomics: identification of genes required for tolerance to methanol, Marta Neves Mota, MSc thesis in Microbiology, IST ULisboa , 2018
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/09/01 - 2018/11/30 Isolation, identification and assessment of the potential of Saccharomyces and non-Saccharomyces strains for craft beer production, Nuno de Bourbon e Carvalho Melo, MSc thesis in Microbiology, IST ULisboa, 2018
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/09/01 - 2018/11/30 PDR18 expression decreases glucose uptake and increases thermo- and osmo-tolerance in yeast: implications for VHG fermentations,João Miguel Semedo Pires de Carvalho, MSc thesis in Biotechnology, IST ULisboa, 2018
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - 2018/07/26 ABC and MFS transporters involved in multistress defense mechanisms in the model eukaryote Saccharomyces cerevisiae: roles of Pdr18 and Tpo1, Cláudia Sofia Pires Godinho, PhD thesis in Biotechnology and Biosciences, 2018
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2018 Characterization of Yeast Stress Tolerance to Industrially Relevant Stresses and Metabolic Engineering for Increased Ergosterol Biosynthesis, Emmi Sveholm , MSc Life Sciences Technologies, Aalto University, 2016
Supervisor
 Life Sciences Technologies (Master)
Aalto-yliopisto Älykkäiden radioiden ja langattoman teknologian huippuyksikkö, Finland
2011 - 2018 Post-doctoral programme: Resistance to drugs and other environmental insults - studies on the yeast model and on clinical bacterial isolates of the Burkholderia cepacia complex bacteria, Sandra C. dos Santos
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2017/01/01 - 2017/12/31 Antibacterial Mode of Action of BMX11, an antifoulant from bacterial origin , Ana Raquel Simões Marques, MSc in Microbiology, IST ULisboa, 2017
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/01/01 - 2017/12/31 Transcriptional profiling of the early response to acetic acid or copper stress mediated by ZbHaa1 in Zygosaccharomyces bailii, Jorge Miguel de Figueiredo Antunes, MSc Biotechnology, IST ULisboa, 2017
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/01/01 - 2017/12/31 Unraveling the biotechnological potential of the secretome of Burkholderia cepacia complex, with focus on its antimicrobial activity, Carina Andreia Ribeiro Galhofa, MSc in Biotechnology, IST ULisboa, 2017
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - 2017/10 Unravelling genes, the Haa1-signalling pathway and cell envelope properties responsible for the remarkably high acetic acid tolerance of Zygosaccharomyces baili, Filipa de Canaveira Roque Baker, PhD Thesis in Biotechnology and Biosciences, IST ULisboa, 2017
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - 2017/04 Towards the improvement of tolerance to acetic and formic acids in yeast: identification of candidate genes and engineering of the Haa1 transcription factor. Sílvia Catarina Filipe Henriques, PhD in Biotechnology and Biosciences, IST-ULisboa, 2017
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/01/01 - 2016/12/31 Single-cell quantification of the expression of plasma membrane MDR transporter Tpo3 from fluorescence imaging in Saccharomyces cerevisiae, Lara Cardoso Pereira Batista da Costa, MSc in Biological Engineering, IST ULisboa, 2016
Supervisor
 Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/01/01 - 2016/12/31 Evaluation of the antibacterial potential of Burkholderia cepacia complex secretome and of BT-12, an antimicrobial produced by BioMimetx SA, Inês Raquel Carvalho Leonardo, MSc in Microbiology, IST ULisboa, 2016
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/01/01 - 2016/12/31 Identification and molecular characterization of the highly acetic acid tolerant Zygosaccharomyces bailii IST302, João Diogo André Peça, MSc in Microbiology, IST Ulisboa, 2016
Supervisor
 Microbiologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/01/01 - 2016/12/31 Overproduction and purification of Haa1 protein envisaging functional and structural studies of this transcription factor involved in yeast adaptive response to acetic acid, Ricardo Aguilar Andrade Ribeiro, MSc Thesis in Biotechnology, IST ULisboa, 2016
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/01/01 - 2016/12/31 Evolution and Bioinformatics Analysis of the Drug:H+ Antiporter Family 1 (DHA1) in the hemiascomycete yeasts, André Miguel Moreira Machado, MSc in Biotechnology, IST ULisboa, 2016
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2016/11/18 Overproduction and purification of Haa1 protein envisaging functional and structural studies of this transcription factor involved in yeast adaptive response to acetic acid, Ricardo Aguilar Andrade RIbeiro, MSc in Biotechnology, IST-ULiboa, 2016
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2016/04/29 Chronic respiratory infections by Burkholderia cepacia complex bacteria in cystic fibrosis patients: Epidemiology and variation of virulence, membrane lipid and metabolite profiles during long-term residence in the lungs. MSc in Applied Microbiology, FC/IST-ULisboa, 2016
Supervisor
 Applied Microbiology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012 - 2016/04 Chronic respiratory infections by Burkholderia cepacia complex bacteria in cystic fibrosis: epidemiology and variation of virulence, membrane lipid and metabolite profiles during long-term residence in the lungs, Ana Sílvia Soares Mendes Moreira, PhD in Biotechnology and Biosciences, Instituto Superior Técnico, U Lisboa
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 - 2016/03/23 Mechanistic insights into adaptation and tolerance to acetic acid in Saccharomyces cerevisiae and Zygosaccharomyces bailii, Joana Filipa Fernandes Guerreiro, PhD in Biotechnology and Biosciences, IST-ULisboa, 2016
Supervisor
 Microbiologia Aplicada (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015/01/01 - 2015/12/31 Functional analysis and evolution of Zygosaccharomyces bailii transcription factor Haa1, involved in acetic acid tolerance, Laura Raquel Guilherme Luzia, MSc in Microbiology, IST Uisboa, 2015
Supervisor
 Microbiology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015/01/01 - 2015/12/31 Comparative study of the toxicity of synthetic nanoparticles to yeast Saccharomyces cerevisiae, Daniela Almeida Correia, MSc Biotechnology, IST-ULisboa, 2015
Co-supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014/01/01 - 2015/12/31 Application of quantitative proteomic approaches for optimization of the ex-vivo expansion program of human mesenchymal stem cells, Ana Cecília Garcia Gonzalez, MSc euSYSBIO Erasmus Mundus program in Systems Biology, 2015
Supervisor
 Systems Biology (Master)
Erasmus Mundus euSYSBIO, Portugal
2011 - 2015/04 Bioethanol - robust production strains for process intensification, Luciano Francisco Borges Pereira, PhD in Chemical and Biological Engineering, U Minho, 2015 (co-supervisor)
Co-supervisor
 Engenharia Química e Biológica (PhD)
Universidade do Minho, Portugal
2014 - 2015 Understand to fight chronic respiratory infections: focus on antimicrobial resistance, persister cells and small colony variants, Pauline Borne, Université de Bourgogne/IST-ULisboa, 2015
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2014/01/01 - 2014/12/31 Role of the transcription factor Haa1p and Haa1p-mutant-proteins in yeast response to acetic acid: focus on mRNA levels from TPO2, HSP30 and HRK1, intracellular ATP levels and pHi, José António Vieira Rodrigues, MSc thesis, n Biotechnology, 2014
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014/01/01 - 2014/12/31 Studies on the involvement of the yeast ABC transporter Pdr18 in acetic acid tolerance at temperatures in the range 30-40 °C, Catarina Alexandra Simões Prata, MSc in Biotechnology, IST-ULisboa, 2014
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - 2014 Burkholderia contaminans: Variations phénotypique. Anne Bonneau, Université de Bourgogne/IST-ULisboa, 2014
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2013/01/01 - 2013/12/31 Functional analysis of Arabidopsis thaliana major facilitator superfamily (MFS) transporters through heterologous expression in yeast, João Miguel Rodrigues da Silva Brazão, MSc thesis in Biotechnology, IST ULisboa, 2013
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 - 2013 La résistance à l'acide acétique chez Zygosaccharomyces bailii, Grégoire Chardon, Génie Biologique, Université de Bourgogne
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2012 - 2013 Post-doctoral programme: Unveiling the role of multidrug resistance transporters in chemical stress defence at a systems level: from the model organism S. cerevisiae and A. thaliana to biotechnological applications, Tânia R. Cabrito,
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2012/01/01 - 2012/12/31 Studies on the role and regulation of the multidrug resistance efflux pumps Tpo1 and Pdr18 in yeast tolerance to ethanol and weak acid stresses, to increase yeast robustness. Cláudia Sofia Pires Godinho, MSc Applied Microbiology, FC/IST-ULisboa, 2012
Supervisor
 Applied Microbiology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/01/01 - 2012/12/31 Elucidating the transcriptional regulatory network controlling the TPO1 response to benzoic acid in yeast. Kaur Alasoo, Erasmus Mundus euSYSBIO, MSc idegree n Systems Biology, 2012
Supervisor
 Systems Biology (Master)
Erasmus Mundus euSYSBIO, Portugal
2012/01/01 - 2012/12/31 Improvement of alcoholic fermentation performance based on highly acetic acid tolerant wine isolates of Saccharomyces cerevisiae and genetically engineered strains, Filipe Bravo da Costa, MSc in Biological Engineering, Instituto Superior Técnico, Uniersidade de Lisboa,
Supervisor
 Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012/01/01 - 2012/12/31 Functional analysis of yeast multidrug resistance transporters Tpo1 and Pdr18 under stress induced by the agricultural fungicide mancozeb. Ana Cristina Taborda Gomes de Almeida, MSc Biotechnology, IST-ULisboa, 2012
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011/01/01 - 2012/12/31 Chronic pulmonary colonization by Burkholderia cepacia complex bacteria in Cystic Fibrosis patients: epidemiology, clonal variation and gene expression analysis of sequential isolates, Ana Sílvia Mendes Moreira, MSC in Applied Microbiology, Faculty of Sciences, Universidade de Lisboa
Supervisor
 Applied Microbiology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2011/01/01 - 2012/12/31 Molecular mechanisms of adaptation and tolerance to acetic acid in the food spoilage yeast Zygosaccharomyces bailii, Joana Filipa Fernandes Guerreiro, MSc in Applied Microbiology, Faculty of Sciences, Universidade de Lisboa
Supervisor
 Applied Microbiology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/01/01 - 2012/01/01 Adaptive strategies of Burkholderia cenocepacia to long-term residence in the lungs of cystic fibrosis patients: genome-wide analyses, MSc in Applied Microbiology, Faculty of Sciences, Universidade de Lisboa of Cláudia Rita Ferreira Maldonado
Supervisor
 Applied Microbiology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 - 2012 Avaliação do mecanismo de escape imunológico do complexo Burkholderia cepacia, Andreia Rodrigues Josefino Lopes, MSc in Molecular Genetics and Biomedicine, Faculty of Sciences and Technology, Universidade Nova de Lisboa
Supervisor
 Molecular Genetics and Biomedicine (Master)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2011 - 2012 Les méchanismes moléculaires à l'origine des différences de tolérance à l'acide acétique et d'utilization du glucose et de l'acide acétique chez Saccharomyces cerevisiae et Zygosaccharomyces baillii, Camille Payre, Degree Génie Biologique, Université de Bourgogne
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2008 - 2012 Global responses to phenol and myrcene in Pseudomonas at the level of cell membrane proteome unveiled by quantitative proteomics
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2008 - 2012 Genome-wide expression approaches applied to biomedical research: long-term adaptation of Burkholderia cenocepacia to cystic fibrosis patients' airways and extended ex-vivo cultivation of human mesenchymal stem cells, Andreia Sofia Matos Madeira, PhD in Biotechnology and Biosciences, IST, ULisboa
Supervisor of Andreia Sofia Matos Madeira
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2009 - 2011 Post-doctoral programme: Microbial adaptive responses to environmental stresses - genome-wide approaches, Nuno P. Mira.
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2007 - 2011 Yeast responses and determinants of resistance to propionic acid or ethanol at a systems level: chemogenomic and metabolomic strategies
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2007 - 2011 Characterization of multidrug resistance transporters in the model organisms Saccharomyces cerevisiae and Arabidopsis thaliana: establishing a link between physiological role and action in chemical stress tolerance
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2007 - 2011 Differentiation of clonal variants of the Burkholderia cepacia complex isolated during chronic respiratory infection in cystic fibrosis patients with FTIR spectroscopy, Carla Patrícia da Silva Coutinho, Pharmaceitical Sciences, Universidade do Porto
Co-supervisor
 Ciências Farmacêuticas (PhD)
Universidade do Porto, Portugal
2010 - 2010 The Yeast Transcription Factor Haa1p: identification of amino acid residues and nucleotides essential for functional Haa1-DNA association, Sílvia Catarina Filipe Henriques, MSc in Biotechnology, Instituto Superior Técnico, Universidade de Lisboa
Supervisor
2009 - 2010 Étude des mécanismes de résistance à l'acide acétique de Zygosaccharomycesspp réalisé à partir du modèle expérimental Saccharomyces cerevisiae, Lise Queiroz, degree Génie Biologique, Université de Bourgogne.
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2008 - 2010 Rôle du transporteur ABC Pdr18p dans la résistance aux ácides faibles chez Saccharomyces cerevisiae, Florént Masson, Degree Génie Biologique, Université de Borgogne
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2006 - 2010 Yeast Toxicogenomics focused on the Agricultural Fungicide Mancozeb: involvement of the drug: H+ antiporter Flr1p, Paulo Jorge Pinto da Costa Dias, PhD in Biotechnology and Biosciences, IST, ULisboa
Supervisor
 Biotecnologia e Biociências B (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2006 - 2010 Yeast as a model in pharmacogenomics: targets and mechanisms of resistance to imatinib and quinine, Sandra Sofia Costa dos Santos, PhD in Biotechnology, IST, ULisboa.
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2006 - 2010 Sugar transport in yeast: phylogenetic analysis of sugar porters and involvement in the global response to chemical stress, Margarida Rosa Palma, PhD in Biology, FCT-Universidade Nova e Lisboa.
Supervisor
 Biologia (PhD)
Universidade Nova de Lisboa, Portugal
2008 - 2009 Rôle du transporteur ABC Pdr18p dans la résistance aux ácides faibles chez Saccharomyces cerevisiae
Supervisor
Université de Bourgogne, France
2008 - 2009 Étude de la résistance a l' ethanol chez la lévure S. cerevisiae lors de la fermentation alcoolique: role du géne FPS1
Supervisor
 Génie Biologique (Degree)
Université de Bourgogne, France
2008/01/01 - 2008/12/31 Functional analysis of Saccharomyces cerevisiae and Arabidopsis thaliana multidrug resistance transporters involved in the resistance to the herbicide 2,4-, Tânia Cabrito, MSc in Biological Engineering, IST, ULisboa
Supervisor
 Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2008/01/01 - 2008/12/31 Análise global dos mecanismos de resistência da levedura ao stresse induzido por concentrações elevadas de etanol e glucose, Luís Raposo, MSc in Biotechnology, IST-Lisboa
Supervisor
 Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2001 - 2008/01 Post-doctoral programme: Estudos orientados pela genómica, sobre a multirresistência a drogas em Saccharomyces cerevisiae
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2007 - 2008 Análise quantitativa do proteoma membranar de Pseudomonas putida KT2440 em resposta ao stresse por fenol
Supervisor of Catarina Roma-Rodrigues
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2007 - 2008 Insights into the complex interplay of transcription factors regulating yeast resistance to the fungicide mancozeb via the multidrug transporter Flr1p
Supervisor
Universidade de Lisboa Instituto Superior Técnico, Portugal
2004 - 2008 Adaptation and resistance to weak acid food preservatives in Saccharomyces cerevisiae: the Haa1p- and the Rim101-signalling pathways, Nuno Pereira Mira, PhD thesis in Biotechnology and Biosciences, IST, ULisboa
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2004 - 2007/12 Post-doctoral programme: " The Burkholderia cepacia complex and the respiratory infections of patients with cystic fibrosis - epidemiology, multiresistance to antibiotics and persistance and virulence determinants, Mónica V. Cunha
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2004 - 2007/07 Post-doctoral programme "Global Analysis of Saccharomyces cerevisiae responses to chemical stresses ", Miguel Cacho Teixeira,
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2002 - 2007/07 Post-doctoral programme: Biodegradação de xenobióticos por Pseudomonas e outras bactérias aparentadas
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2002 - 2006 Respostas a stresse químico imposto por mancozebe e ácidos lipofílicos em Saccharomyces cerevisiae: abordagens gene a gene e proteómica
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2004 - 2005 Studies on the transcriptional regulation of the polyamine transporter encoding genes TPO1, TPO2, TPO3and TPO4
Supervisor
Universidade de Lisboa Instituto Superior Técnico, Portugal
2002 - 2005 Post-doctoral programme: Biologia molecular e engenharia genética da biossíntese de exopolissacáridos bacterianos
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2001 - 2005 Yeast responses to quinidine: characterization of new drug: H+-antiporters involved in quinidine resistance and identification of quinidine-responsive genes
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2000 - 2005 Post-doctoral programme: Resistência a múltiplas drogas em Saccharomyces cerevisiae - uma abordagem pós-genómica
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2003 - 2004/10 Post-doctoral programme: Biossíntese do exopolissacárido gelano por Sphingomonas paucimobilis ATCC 31461 - análise funcional e estrutural de enzimas biossintéticas e manipulação genética da via
Supervisor
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2003 - 2004 Studies on the resistance to anticancer drugs using Saccharomyces cerevisiaeas an eukaryotic experimental model: role of drug:H +-antiporters
Supervisor
Universidade de Lisboa Instituto Superior Técnico, Portugal
2000 - 2004 O complexo Burkholderia cepacia em infeções respiratórias de doentes portugueses com fibrose quística. Epidemiologia molecular, resistência a antibióticos e presumíveis factores de virulência e persistência da infeção
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2000 - 2004 Molecular responses to the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) in yeast from a gene by gene analysis to global approaches
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1999 - 2003 Biossíntese de peptidoglicano e alginato em Pseudomonas aeruginosa: análise funcional do gene glmM que codifica a fosfoglucosamina mutase
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1999 - 2003 Biossíntese e degradação de polissacáridos por Sphingomonas paucimobilis ATCC 31461, análise computacional e funcional dos genes: ugpG, bgl1 e bgl3
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1998 - 2002 Biossíntese do exopolissacárido gelano em Sphingomonas paucimobilis ATCC 31461: genes, enzimas e manipulação genética da via biossintética
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1998 - 2002 Burkholderia cepacia nas infeções respiratórias de doentes portugueses com fibrose quística: epidemiologia molecular e biossíntese de exopolissacárido
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2000 - 2001 Adaptação e resistência a quinidina em S. cerevisiae: papel da ORF YIL120w (gene QDR1) que codifica uma proteína da superfamília de facilitadores maioritários envolvida na resistência a múltiplas drogas
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1997 - 2001 Análise funcional de novos genes de Saccharomyces cerevisiae que codificam presumíveis transportadores de múltiplas drogas da Superfamília de Transportadores Maioritários
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1999 - 2000 O gene FLR1 confere resistência a benomil e metotrexato em S. cerevisiae, sendo a activação da sua expressão, durante a fase de latência induzida por benomil, dependente de Pdr3p e de Msn2p/Msn4p
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1999 - 2000 Análise funcional do gene pgmG da estirpe produtora de gelano S. paucimobilis ATCC31461, o qual codifica uma proteína bifuncional com actividade de fosfoglucomutase e fosfomanomutase
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1996 - 2000 A H+-ATPase da membrana plasmática e a resposta ao stress oxidativo, em particular ao stress pelo cobre, em Saccharomyces cerevisiae
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1997 - 1998 Activação da H+-ATPase da Membrana Plasmática e Expressão do Genes PMA1 e PMA2 durante o crescimento de S. cerevisiae com Concentrações Inibidores de Ácido Cinâmico e Fenol
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1994 - 1998 Mecanismos moleculares envolvidos na activação da H+-ATPase da Membrana Plasmática de Saccharomyces cerevisiae pelo etanol
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1994 - 1998 Resposta fisiológica de Saccharomyces cerevisiae a stress ácido, criado por ácidos fortes ou fracos: papel da H+-ATPase da membrana plasmática
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1993 - 1997 Caracterização do genoma de estirpes dos géneros Thermus e Rhodotermus: polimorfismo dos macrofragmentos de restrição, do rDNA, e de megaplasmídeos
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1996 Efeito de Factores Ambientais na Via Biossintética do Alginato em Pseudomonas aeruginosa: dependência da transcrição de genes do alginato e da actividade de enzimas biossintéticas da fase do crescimento e das concentrações de O2 e Cu2+
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1996 Contribuição para a análise genética da biossíntese do exopolissacárido de gelano em Sphingomonas paucimobilis
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1994 - 1995 Efeitos do Cobre (II) na Biossíntese do Exopolissacárido Gelano e na Variação do Fenótipo Mucoso em S. paucimobilis
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1994 - 1994 Via Biossintética dos Nucleótidos de Açúcar Envolvidos na Produção do Exopolissacárdio Gelano por Sphingomonas Paucimobilis
Supervisor
 Biotecnologia (PhD)
1994 - 1994 Efeitos do Cu2+ na Actividade da H+-ATPase da Membrana Plasmática de S. cerevisiae e na Expressão dos Genes PMA1 e PMA2
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1993 - 1994 Identificação da Região II do Cromossoma de S. paucimobilis Envolvida na Síntese de Gelano
Supervisor
 Biotecnologia
Universidade de Lisboa Instituto Superior Técnico, Portugal
1990 - 1994 Via Biossintética dos Nucleótidos de Açúcar Envolvidos na Produção do Exopolissacárido Gelano por Sphingomonas paucimobilis
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1990 - 1994 Regulação da Actividade da H+-ATPase de Membrana Plasmática de Saccharomyces cerevisiae durante o crescimento com Ácido octanóico
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1990 - 1994 A H+-ATPase da Membrana Plasmática e os Mecanismos de Toxicidade e Tolerância ao Etanol em Leveduras
Supervisor
 Biotecnologia e Biociências (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1993 Construção de um Banco Genómico de P. elodea e sua Utilização na Complementação de Mutantes não Produtores de Gelano
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1993 Distribuição de Plasmídeos em eu-bactérias do Género Thermus
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1993 Perfis de Temperatura do Crescimento e Produção de Exopolissacárido em Condições Optimizadas pela Microalga B. braunii UC58
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1992 - 1993 Variação da Síntese de Gelano em P. elodea e Identificação de um Fragmento de DNA que Afecta a Síntese deste Exopolissacárido
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1991 - 1992 Manipulação Genética da Síntese de Alginato em P. aeruginosa (1992),
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1991 - 1992 Manipulação da Síntese de Gelano em P. elodea
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1990 - 1991 Mecanismos Envolvidos na Menor Tolerância a Etanol de S. cerevisiae a Baixas Temperaturas
Supervisor
Universidade de Lisboa Instituto Superior Técnico, Portugal
1990 - 1991 Electrotransformação de P. elodea na Clonagem dos Genes Envolvidos na Síntese de Gelano
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1989 - 1990 Fisiologia da Biossíntese de Alginato por P. aeruginosa: Enzimas Biossintéticas em Variantes Mucosas e Não Mucosas e Efeitos dos Iões Mn2+, Mg2+ e Ca2+
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1989 - 1990 Fisiologia da Biossíntese de Alginato por P. aeruginosa e de Gelano por P. elodea: Células Livres e Imobilizadas
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1988 - 1989 Perfis de Temperatura do Crescimento, Produção de Alginato e Morte de Variantes Mucosas e Não-Mucosas de P. aeruginosa
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1987 - 1988 Toxicidade e Produção dos Ácidos Octanóico e Decanóico durante a Fermentação Alcoólica por S. cerevisiae
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1987 - 1988 Mecanismos Subjacentes à Acção de Aditivos no Melhoramento da Fermentação Alcoólica por Leveduras
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
1987 - 1988 Cinética do Efluxo de Compostos Intracelulares Induzido por Etanol em S. cerevisiae. Relação com a Tolerância ao Etanol e a Produtividade da Fermentação Alcoólica
Supervisor
 Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2022 - 2023 FEMS Congress-Organization and chairing the session OTS 14: Yeast strategies to resist relevant stresses in bioindustries https://www.fems2023.org/ (2022 - 2023)
2019 - 2021 Programme Committee of the 9th Congress of European Microbiologists to be held 11-15 July 2021 in Hamburg, Germany (2020 - 2021) Federation Of European Microbiological Societies, United Kingdom
2020/01/01 - 2020/09/17 Organization with FEMS and SPM a 24-hour live stream of talks and discussions to commemorate the International Microorganism Day, September 17, 2020 (2020 - 2020)
Conference (Co-organisor)
2018 - 2019 3rd International Microorganism Day at Instituto Superior Técnico, Lisboa, Portugal (Organizing Committee) (https://internationalmicroorganismday.wordpress.com/) (2019/09/17 - 2019/09/17) Sociedade Portuguesa de Microbiologia, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 2nd International Microorganism Day at Instituto Superior Técnico, Lisbon, with the support of a FEMS meeting grant (organizing committee) (hhttps://internationalmicroorganismday.wordpress.com/2018/05/25/home/) (2018/09/17 - 2018/09/17) Sociedade Portuguesa de Microbiologia, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2017 1st International Microorganism Day, at Pavilhão do Conhecimento (Comissão organizadora) https://www.pavconhecimento.pt/4505/dia-internacional-do-microrganismo (2017/09/17 - 2017/09/17) Sociedade Portuguesa de Microbiologia, Portugal

Ciência Viva, Portugal
2016 - 2017 Organized the 2017 FEMS Council meeting, 8-9, September, 2017, as FEMS delegate to the FEMS Council. (2017 - 2017) Federation Of European Microbiological Societies, United Kingdom
2016/07/11 - 2016/07/14 Chair of the Organizing and Scientific Committees of PYFF6 - 6th Conference on Physiology of Yeast and Filamentous Fungi, July 11-14, 2016, Lisbon, PortugaOrganization of Physiology of Yeasts and Filamentous Fungi (PYFF) meeting, 6th edition, Lisbon. http://groups.tecnico.ulisboa.pt/bsrg/pyff6/index.php (2016/07/11 - 2016/07/14)
Conference (President of the Organising Committee)
 Universidade de Lisboa Instituto Superior Técnico, Portugal

Federation Of European Microbiological Societies, United Kingdom
2015/01 - 2015/01 Winter School in Systems Biology in the framework of the Erasmus Mundus euSYSBIO Masters in Systems Biology, January 2015, Instituto Superior Técnico,, Lisbon (2015) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014/01 - 2014/01 Winter School in Systems Biology in the framework of the Erasmus Mundus euSYSBIO Masters in Systems Biology, January 2014, Instituto Superior Técnico,, Lisbon (2014) Universidade de Lisboa Instituto Superior Técnico, Portugal
2013/01 - 2013/01 Winter School in Systems Biology in the framework of the Erasmus Mundus euSYSBIO Masters in Systems Biology, January 2013, Instituto Superior Técnico, Lisbon (2013)
2012 - 2013 36th European Cystic Fibrosis Conference, Lisbon, 12-15 June 2013 (scientific & organizing committees and chairperson of the Symposium "Translating what we have learned from bacterial genomics to CF care"). (2013) European Cystic Fibrosis Society, Denmark
2012/01 - 2012/01 Winter School in Systems Biology, in the framework of the Erasmus Mundus euSYSBIO Masters in Systems Biology, January 2012, Instituto Superior Técnico,, Lisbon (2012) Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2012 Meeting of the Management Committee and Working Groups of COST Action BM1003, Microbial cell surface determinants of virulence as targets for new therapeutics in Cystic Fibrosis, November 19th -20th, 2012, Lisbon) (2012 - 2012) European Commission, Belgium
2011/01 - 2011/01 Winter School in Systems Biology, in the framework of the Erasmus Mundus euSYSBIO Masters in Systems Biology, January 2011, Instituto Superior Técnico, Lisboa (2011/01) Universidade de Lisboa Instituto Superior Técnico, Portugal
2010 - 2011 -9th Carbohydrate Bioengineering Meeting (CBM9), Lisbon, Portugal, May 15-18, 2011 (Organizing Committee). (2011)
2010 - 2011 9th Carbohydrate Bioengineering Meeting (CBM9), 15-18 May 2011, Lisbon, Portugal (2011)
Congress
2006 - 2007 Co-Chair of MicroBiotec 07, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Lisboa, 5 -7 December, 2007 (2007 - 2007) Sociedade Portuguesa de Microbiologia, Portugal

Sociedade Portuguesa de Biotenologia, Portugal
1996 - 1997 Chair of the Euroconference (funded by EU) and organised under the auspices of the European Federation of Biotechnology (EFB) Working Party Microbial Physiology and the Sociedade Portuguesa de Biotecnologia, Sesimbra, Portugal, march 15-18, 1997. (1997 - 1997) Universidade de Lisboa Instituto Superior Técnico, Portugal

Sociedade Portuguesa de Biotenologia, Portugal

Association member

Society Organization name Role
2015/01/01 - Current Member of the Institute for Bioengineering and Biosciences (iBB) and of its Biological Sciences Research Group. Member of the Directive Board
2009/01/01 - Current Member of the Department of Bioengineering, Instituto Superior Técnico Vice-President
2003/01/01 - Current Member of the Portuguese Society of Microbiology President
1998/01/01 - Current The Genetics Society of America
1992/01/01 - Current The New York Academy of Sciences and American Association for the Advancement of Science
1989/01/01 - Current Society for General Microbiology
1988/01/01 - Current American Society for Microbiology
1993/02/01 - 2015/12/01 Member of the Biological Sciences Research Group of IBB - Institute for Biotechnology and Bioengineering and of CEBQ (Centro de Engª Biológica e Química), IST Head of the Biological Sciences Research Group
1989/01/01 - 1995/01/01 Associate Professor, Instituto Superior Técnico, Technical University of Lisbon Assistant Professor
1984/01/01 - 1989/01/01 Assistant Professor, Instituto Superior Técnico, Technical University of Lisbon Assistant Professor
1985/09/01 - 1986/09/15 Fulbright Visiting Assistant Professor, University of Illinois at Chicago, College of Medicine, Medical Centre, Chicago, USA (with A. M. Chakrabarty) Fulbright Visiting Assistant Professor (Molecular Microbiology)
1980/01/01 - 1984/01/01 PhD student in the Microbiology Lab., Instituto Gulbenkian de Ciência, Oeiras (advisor: N. van Uden) PhD Student
1975/01/01 - 1984/01/01 Teaching Assistant, Instituto Superior Técnico, Technical University of Lisbon Teaching Assistant

Committee member

Activity description
Role 		Institution / Organization
2022/12/08 - Current Member of EASAC (European Academies Science Advisory Council) Council
2021 - Current Elected member of the International Relations Committee (Classe de Ciências), Academia de Ciências de Lisboa
2017 - Current Member of the Ethics Committee, Instituto Superior Técnico, Universidade de Lisboa Universidade de Lisboa Instituto Superior Técnico, Portugal
2015/01/01 - Current Directive Board of the FCT funded PhD programme in Applied and Environmental Microbiology (AEM)
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
2015/01/01 - Current Director of the FCT funded PhD programme in Biotechnology and Biosciences (BIOTECnico)
Director
 Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - Current Coordinator of the joint Master’s program in Microbiology of Universidade de Lisboa (coordination of IST, in collaboration with the Faculties of Sciences, Medicine and Veterinary Medicine) Universidade de Lisboa Instituto Superior Técnico, Portugal
2010/01/01 - Current Member of the Scientific Committee of the PhD program in Bioengineering at IST (MIT-Portuguese Universities) Universidade de Lisboa Instituto Superior Técnico, Portugal
2009/01/01 - Current Member of Council Federation Of European Microbiological Societies, United Kingdom
2003/09/15 - Current Coordinator of the PhD programme in Biotechnology/Biotechnology and Biosciences
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
1992/01/01 - Current Coordinator of the Scientific and Pedagogical area of Biological Sciences
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
2013/01/05 - 2022/08/21 Member of the General Council of Universidade de Lisboa Universidade de Lisboa Instituto Superior Técnico, Portugal
2013/01/01 - 2022/08/21 Directive Board member of the Institute for Bioengineering and Biosciences (iBB) and Coordinator of the Biological Sciences Research Group. Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2009/08/01 - 2020/12 President of the Portuguese Society of Microbiology (SPM) Sociedade Portuguesa de Microbiologia, Portugal
2015 - 2020/08 Member of the Conselho Nacional de Educação (National Educational Council), in representation of the research units rated as exceptional or excellent Conselho Nacional de Educação, Portugal
2008/09/15 - 2018/09/15 Coordinator of the IST Master Degree in Biotechnology
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
2011/01/01 - 2018/01/01 Vice President, Department of Bioengineering Universidade de Lisboa Instituto Superior Técnico, Portugal
2009/01/01 - 2016/01/01 Member of the Scientific Council Universidade de Lisboa Instituto Superior Técnico, Portugal
2010/09/15 - 2015/09/15 Coordinator at IST of the Erasmus Mundus Master's Program in Systems Biology - euSYSBIO (IST in collaboration with KTH, Stockholm, Sweden and Finland's Aalto University)
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
1993/01/01 - 2013/01/01 Head of the Biological Sciences Research Group of the Institute for Biotechnology and Bioengineering (IBB) and of Centro de Engª Biológica e Química (CEBQ) Universidade de Lisboa Instituto Superior Técnico, Portugal
1997/09/15 - 2011/01/15 Coordinator of the 5 year-bachelor degree / Integrated Master degree in Biological Engineering
Coordinator
 Universidade de Lisboa Instituto Superior Técnico, Portugal
1993/01/01 - 2009/01/01 Director of Boletim de Biotecnologia, the Portuguese Society of Biotechnology Magazine Sociedade Portuguesa de Biotenologia, Portugal
1993/01/01 - 2003/01/01 Vice-President of Portuguese Society of Biotechnology Sociedade Portuguesa de Biotenologia, Portugal
1995 - 2000 Member of the Life, Earth and Environmental Sciences Committee of the European Science Foundation (1995-2000)
Member
 European Science Foundation, France

Conference scientific committee

Conference name Conference host
2022 - Current PYFF8 (Physiology of Yeast and Filamentous Fungi 8) (https://www.efbiotechnology.org/PYFF) Scientific Committee
2019/10/29 - 2021 Programme Committee of the 9th Congress of European Microbiologists to be held 11-15 July 2021 in Hamburg, Germany FEMS
2018/01/01 - 2019/12/08 MicroBiotec, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Universidade de Coimbra, 5 -7 December, 2019 Universidade de Coimbra, Sociedades Portuguesas de Microbiologia e de Biotecnologia
2018 - 2019/06/28 PYFF 7-7th Conference on Physiology of Yeast and Filamentous Fungi, June, 24-27 2019 Milan, Italy (scientific committee and chair, with Paola Branduardi, of Session I - Evolution and niche adaptation of yeast and filamentous fungi ) European Federation of Biotechnology, University of Milano-Bicocca (UNIMIB),
2016/01/01 - 2017/12/10 MicroBiotec, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Porto, 7-9 December, 2017 Escola Superior de Biotecnologia, UCP and Sociedades Portuguesas de Microbiologia e Biotecnologia
2015/01/01 - 2016/07/14 Chair: of the Organizing and Scientific Committees of PYFF6 - 6th Conference on Physiology of Yeast and Filamentous Fungi, July 11-14, 2016, Lisbon, Portugal ULisboa Instituto Superior Técnico, FEMS, EFB
2014/01/01 - 2015/12/13 MicroBiotec, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Universidade de Évora, 10-12 December, 2015 Universidade de Évora, Sociedades Portuguesas de Microbiologia e Biotecnologia
2012/01/01 - 2013/12/09 MicroBiotec, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Universidade de Aveiro, 6-8 December 2013 Universidade de Aveiro e Sociedades Portuguesas de Microbiologia e de Biotecnologia
2013/06/12 - 2013/06/15 36th European Cystic Fibrosis Conference, Lisbon, 12-15 June 2013 (scientific & organizing committees and chairperson of the Symposium "Translating what we have learned from bacterial genomics to CF care"). European Cystic Fibrosis Society
2013/06/04 - 2013/06/07 PYFF5-5th Conference on Physiology of Yeast and Filamentous Fungi, June, 4-7 2013 Montpellier (scientific committee and chairperson of session “Response and tolerance to stress”) INRA, EFB
2012/11/19 - 2012/11/20 -Meeting of the Management Committee and Working Groups of COST Action BM1003, Microbial cell surface determinants of virulence as targets for new therapeutics in Cystic Fibrosis, November 19th -20th, 2012, Lisbon. COST Programme
2010 - 2011/12/03 MicroBiotec, the Joint Congress of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, Universidade do Minho, Braga, 1-3 December 2011 Universidade do Minho, Sociedades Portuguesas de Microbiologia e de Biotecnologia
2010/10/23 - 2010/10/27 The 4th EuPA (EUropean Proteomics Association) Meeting, October 23-27, 2010, Estoril, Portugal (Scientific Committee; chair of the closing session and co-chair of the “Microorganisms & Animals Models” session) EUropean Proteomics Association

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2021 - Current Grant Evaluations for European Science Foundation
2017 - Current Review for an Einstein Professorship, Einstein Foundation Berlin, 2017
Evaluator
 Einstein Stiftung Berlin
2015 - Current Member of the evaluation panel "Genetics, Genomics, Bioinformatics and Systems Biology" for Advanced Grants, European Research Council, 2016
Member
 European Research Council
2014 - Current Evaluation Committee of the Methusalem program for financing long-term research of excellence by the Flemish Government, at KU Leuven, Belgium, 2014/15
Evaluator
 KU Leuven, Belgium, Belgium Flemish Government
2013 - Current Member of the evaluation panel "Genetics, Genomics, Bioinformatics and Systems Biology" of Advanced Grants, European Research Council, 2014.
Evaluator
 European Research Council, Belgium European Research Council
2013 - Current Remote evaluator of Synergy grants, European Research Council, 2013
Evaluator
 European Research Council
2009/07/01 - Current President or member of the external evaluation committee "Biochemistry and Biotechnology, University Education", Agency for the Evaluation and Accreditation of Higher Education (A3ES), Portugal, since 2009 Agência de Avaliação e Acreditação do Ensino Superior , Portugal
2000 - Current Evaluation of research project proposals for: BE-Basic Foundation, The Netherlands; Austrian Science Fund, Austria; ARN-Agence Nationale de la Recherche, France; Biotechnology and Biological Sciences Research Council (BBSRC), UK
Evaluator
 Agence nationale de la recherche

Biotechnology and Biological Sciences Research Council

BE-Basic Foundation
1996 - Current Portuguese Foundation for Science and Technology (FCT), Portugal (evaluation of final project reports, bi-lateral actions, individual PhD fellowships)
Evaluator
 Fundação para a Ciência e a Tecnologia
2022 - 2022 Evaluation of research programs of research groups to be supported as part of the Strategic research and innovation programs of their university, Bulgarian National Science Fund
2017/01/01 - 2020/12/01 Horizon 2020 call FETOPEN-01-2018-2019-2020: FET-Open Challenging Current Thinking, which is now part of the Enhanced European Innovation Council (EIC) pilot, 2018, 2019, 2020 Calls.
Evaluator
 European Commission
2014 - 2015 Member of the evaluation and accreditation panel of the new Master´s Program in Systems Biology at Maastricht University, by invitation of NVAO (Accreditation Organisation of the Netherlands and Flanders), 2014/2015
Evaluator
 Maarstricht University, Netherlands Nederlands-Vlaamse Accreditatieorganisatie
2012/01/01 - 2012/11/01 Member of the evaluation panel "Genetics, Genomics, Bioinformatics and Systems Biology" of Advanced grants, European Research Council, 2012
Evaluator
 European Science Foundation, France European Research Council
2010/01/01 - 2010/11/01 Member of the evaluation panel "Genetics, Genomics, Bioinformatics and Systems Biology" of Advanced grants, European Research Council, 2010
Evaluator
 European Research Council

Journal scientific committee

Journal title (ISSN) Publisher
2022 - Current Journal of Fungi, editorial Board Member
2013 - Current Editorial Board of "Microbial Cell" (2311-2638) Shared Science Publishers OG
2010 - Current Editorial Board of "OMICS : a Journal of Integrative Biology" (1557-8100) Mary Ann Liebert
2008 - Current Editorial Board of BioMed Research International (2314-6141) Hindawi Limited
2007 - Current Editorial Board of "FEMS Yeast Research" (1567-1364) Oxford University Press
2020 - 2021/10/31 Special Issue "Yeast Biorefineries" for Journal of Fungi, Guest editor (14 papers) ; https://www.mdpi.com/journal/jof/special_issues/Yeast_Biorefineries
2017/11 - 2019/03 Guest Associate Editor (with Ed Louis) for Frontiers in Microbiology- Evolutionary and Genomic Microbiology Section, research topic: Functional and Comparative Genomics of of Saccharomyces and non-Saccharomyces Yeasts: Potential for Industrial and Food Biotechnology Frontiers Media SA
2013/11 - 2014/12 Guest Associate Editor for Frontiers in Physiology - Membrane Physiology and Biophysics Section, Special Issue-Research Topic : "Physiological role and regulation of Multidrug/Multixenobiotic resistance membrane transporters" Frontiers Media SA
2008 - 2014 Editorial Board of International Journal of Microbiology (1687-9198) Hindawi Limited
2012/05 - 2012/06 Co-editor of special issue in the context of the 9th Carbohydrate Bioengineering Meeting, Lisbon, Portugal (Fontes, CMGA, Sa-Correia I, Romão MJ, Sa-Nogueira I, Prates JAM) BIOCATALYSIS AND BIOTRANSFORMATION Volume: 30 Issue: 3 Pages: 273-273 DOI: 10.3109/10242422.2012.681858 Published: MAY 2012 (1029-2446) Informa UK (Taylor & Francis)
2009 - 2010 Guest Editor for OMICS: A JOURNAL OF INTEGRATIVE BIOLOGY - Two Special Issues on "Yeasts" and on "Response to Stress in Yeasts" Mary Ann Liebert
1997 - 2006 Editorial Board of "Applied and Environmental Microbiology", American Society for Microbiology (1098-5336) American Society for Microbiology
Distinctions

Award

2022 FEMS Special Merit Award for 2022. This award recognizes contributions to FEMS and the microbiologicalcommunity beyond and in addition to research excellence.
2021 Nicolau Van Uden Career Award 2021 awarded by SPM for a remarkable career as Professor and Researcher, in the areas of Molecular and Cellular Microbiology and Functional and Comparative Genomics with impact on Microbial Biotechnology and Human Health.
Sociedade Portuguesa de Microbiologia, Portugal
2018 Prize of Excelence in Teaching, Instituto Superior Técnico, 2016/2017
2018 Instituto Superior Técnico Distinguished Professor, for scientific leadership in the field of Biological Sciences and exceptional contributions to the academic life
2015 Elected Member (corresponding) of Academia das Ciências de Lisboa (Biological Sciences).
2009 Scientific Prize (Biochemistry), Universidade Técnica de Lisboa - Santander Totta
2008 Honorable mention (field: Biological Engineering, Biochemistry and Biotechnology), Technical University of Lisbon - Santander Totta
2007 Sartorius award - Inovation in Microbiology/Biotecnology
2004 The Portuguese Foundation for Science and Technology Award of Excellence in Science (A Stimulus to Excellence in Science)
1992 Elected Active Member of the New York Academy of Sciences

Other distinction

2003 Portuguese Society of Biotechnology Honorary Member
Sociedade Portuguesa de Biotenologia, Portugal
1986 Fulbright Scholar, Fundação Luso americana para o Desenvolvimento
Fundação Luso-Americana, Portugal
1986 Post-doctoral fellowship, Fundação Calouste Gulbenkian, 1986/1987
Fundação Calouste Gulbenkian, Portugal