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Since the beginning of my graduate studies, I have been passionate about Genetics and Molecular Biology research. Attending the Molecular, Comparative, and Technological Genetics course provided me with both theoretical and practical knowledge that helped me pursue a master's degree followed by a PhD project. My research aimed to characterize the genome of marine bivalve families with high economic and ecological importance, using molecular and cytogenetic techniques. This work, which has been published, demonstrates my expertise in molecular genetics and cytogenetic techniques. In 2012, I moved to Cambridge, UK, and worked as a Research Assistant at Cytocell Ltd under Dr. Martin Lawrie, based at the Cambridge Resource Centre for Comparative Genomics (CRCCG). Later, in 2015, I became a Research Associate at the University of Cambridge under Prof. Ferguson-Smith. At CRCCG, I worked in a core facility specializing in a dual-laser flow cytometer for chromosome sorting and DNA enrichment, focusing on vertebrate sex chromosome evolution. I gained expertise in cell culture, metaphase chromosome preparation, DOP-PCR/WGA for probe preparation, FISH, digital microscopy, and image analysis. Additionally, I collaborated with international labs such as the Makova Lab (Penn State University), the Sex Chromosome Biology Lab (Francis Crick Institute), and others to investigate karyotype restructuring during species evolution. These experiences enhanced my skills in troubleshooting and collaborative research. In 2019, I became a Junior Researcher on the "Defining the Risk of Chronic Wasting Disease of Cervids in Portugal (WastingPrionRisk)" project and joined CECAV (Center for Animal and Veterinary Science) at UTAD. My role included executing molecular and genetic tasks while gaining experience in project management and development. Concurrently, I lectured at the Departments of Genetics and Biotechnology and Veterinary Sciences at UTAD (approximately 3 hours/year), supervised undergraduate and master's students, and supported doctoral students in Genetics, Molecular Cytogenetics, and Bioinformatics. To expand my expertise, I completed an undergraduate degree in Informatics Engineering (2019–2023), focusing on applying computational biology techniques such as machine learning and deep learning to omics data analysis. This added value to my skill set, enhancing my ability to address complex biological questions. From June 2026, I will join Genetics4U as a research of its Core Facility and integrate as a researcher in the RISE-Health unit. My background in molecular and cytogenetic techniques, informatics Ai-driven, and collaborative project management positions me to contribute significantly to both facilities. My contributions to science include publications in peer-reviewed journals, student supervision, and participation in international meetings, reflecting a commitment to advancing research and fostering knowledge exchange.
Education
Degree Classification
2019/09/01 - 2023/06/27
Concluded
Engenharia Informática (Licenciatura)
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências e Tecnologia, Portugal
13
2016/03/16
Concluded
Genética Molecular, Comparativa e Tecnológica (Doutoramento)
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
"Molecular and Cytogenetic analysis of Bivalve species with commercial interest" (THESIS/DISSERTATION)
19
2008
Concluded
Genética Molecular, Comparativa e Tecnológica (Mestrado)
Universidade de Trás-os-Montes e Alto Douro, Portugal
"Perfis de RAPD-PCR em populacoes de R. decussatus (linnaeus, 1758) do sul de portugal: - Avaliacao da diversidade genética." (THESIS/DISSERTATION)
18
2003
Concluded
Biologia e Geologia (ensino de) (Licenciatura)
Universidade de Trás-os-Montes e Alto Douro, Portugal
"Biologia e Geologia (ensino de)" (THESIS/DISSERTATION)
15
Affiliation

Science

Category
Host institution
Employer
2024/06/01 - Current Researcher (Research) RISE - Health Research Network, Portugal
2023/09/01 - 2024/05/31 Researcher (Research) Universidade de Trás-os-Montes e Alto Douro, Portugal
2019/08/01 - 2023/08/01 Contracted Researcher (Research) Centro de Ciência Animal e Veterinária, Portugal
Centro de Ciência Animal e Veterinária, Portugal
2012/09/01 - 2019/07/31 Research Assistant (Research) University of Cambridge Department of Veterinary Medicine, United Kingdom
University of Cambridge Department of Veterinary Medicine, United Kingdom
2012/09/01 - 2016/08/31 Contracted Researcher (Research) Cytocell Ltd, United Kingdom
Cytocell Ltd, United Kingdom

Teaching in Higher Education

Category
Host institution
Employer
2021 - 2022 Invited Assistant Professor (University Teacher) Universidade de Tras-os-Montes e Alto Douro, Portugal
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2020 - 2021 Invited Assistant Professor (University Teacher) Universidade de Tras-os-Montes e Alto Douro, Portugal
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2019 - 2020 Invited Assistant Professor (University Teacher) Universidade de Tras-os-Montes e Alto Douro, Portugal
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal

Other Careers

Category
Host institution
Employer
2024/06/01 - Current Técnico Superior (Técnico Superior) Universidade de Trás-os-Montes e Alto Douro, Portugal
Universidade de Trás-os-Montes e Alto Douro, Portugal
2005/01/01 - 2005/08/31 Professor do ensino básico e secundário (Professor do ensino básico e secundário) EB2/3 Ciclos Professor Noronha Feio, Portugal

Others

Category
Host institution
Employer
2008/04/02 - 2012/04/30 PhD student in Molecular, Comparative and Technological Genetics Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2005/11/11 - 2008/04/01 Master student in Molecular, Comparative and Technological Genetics Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2004/11/11 - 2005/09/05 Post-graduation student in Molecular, Comparative and Technological Genetics Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
Projects

Grant

Designation Funders
2025/01/01 - Current Decision-making support in adult emergency triage, using artificial intelligence
2024.07400.IACDC
Post-doc
Fundação para a Ciência e a Tecnologia
Ongoing

Contract

Designation Funders
2025/01/01 - Current Decoding the small RNA of edible mushrooms – from its functions in human cancer cells to its potential anticancer effect
2023.13940.PEX
Post-doc
Fundação para a Ciência e a Tecnologia
Ongoing
2019/08/01 - Current Chronic wasting disease risk assessment in Portugal
Projeto FCT 02/SAICT/2017 Nº 029947 WastingPrionRisk
Post-doc
Universidade de Trás-os-Montes e Alto Douro, Portugal

Instituto Politécnico de Castelo Branco Escola Superior Agrária, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal

Centro de Ciência Animal e Veterinária, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Ongoing
2022/01/01 - 2025/12/31 Genomics of European-Wide Wolf-Dog Hybridization and Introgression
PSG715
Post-doc
Estonian Research Competency Council
Ongoing
2008/09/01 - 2011/08/31 Padrões de evolução cromossómica em Bivalvia (Mollusca): Realização de Mapas Cromossómicos por restrição In Situ e Especificidades Cromossómicas dos Genes Ribossomais. (PACEB)
PTDC/MAR/72163/2006
Instituto Nacional de Investigação Agrária e Veterinária, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Instituto Português do Mar e da Atmosfera, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/09/01 - 2011/08/30 Patterns of Chromosome Evolution in Bivalvia (Mollusca): In Situ Restriction Chromosome Maps and Ribosomal Genes Chromosome Traits
POCI/BIA-BCM/58541/2004/ PTDC/MAR/72163/2006
Researcher
Universidade de Trás-os-Montes e Alto Douro, Portugal

IPIMAR, Portugal

Instituto Nacional de Investigação Agrária e Veterinária Centro de Documentação e Informação, Portugal
Concluded
Outputs

Publications

Conference abstract
  1. Pires, Maria dos Anjos; Juan Maria Torres; Jorge C Pereira; Gonçalves-Anjo, Nuno; Bastos, Estela; Ana C Matos; Adelina Gama; et al. Corresponding author: Pires, Maria dos Anjos. "Chronic Wasting Disease Risk Assessment in Portugal. Results and Future work". Paper presented in 10th Iberian Congress on Prions, Vila Real, 2022.
    Published
  2. Furo, Ivanete; Kretschmer, Rafael; Pereira, Jorge; Griffin, Darren; O’Connor, Rebecca; O’Brien, Patricia C. M.; Ferguson-Smith, Malcolm; Oliveira, Edivaldo H. C. de. "Revising the Chromosome-Specific Probes of White Hawk (Leucopternis albicollis)". 2020.
    10.3390/iecge-07152
  3. Furo, Ivanete; Kretschmer, Rafael; Pereira, Jorge; Griffin, Darren; O’Connor, Rebecca; O’Brien, Patricia C. M.; Ferguson-Smith, Malcolm; Oliveira, Edivaldo H. C. de. "Revising the Chromosome-Specific Probes of White Hawk (Leucopternis albicollis)". 2020.
    10.3390/iecge-07152
  4. Furo, Ivanete; Kretschmer, Rafael; Pereira, Jorge; Griffin, Darren; O’Connor, Rebecca; O’Brien, Patricia C. M.; Ferguson-Smith, Malcolm; Oliveira, Edivaldo H. C. de. "Revising the Chromosome-Specific Probes of White Hawk (Leucopternis albicollis)". 2020.
    10.3390/iecge-07152
  5. Gonçalves-Anjo, N; Pereira, Jorge; Bastos, Estela; Gama, Adelina; Orge, Leonor; Pires, Maria dos Anjos. "Molecular Genetics Approaches- current state of Chronic Wasting Disease in Portugal". Paper presented in International Meeting of the Portuguese Society of Genetics, 2020.
  6. Gonçalves-Anjo, N; Pereira, Jorge; Gama, Adelina; Orge, Leonor; Pires, Maria dos Anjos; Bastos, Estela. "Human and animal Prionic Diseases in Portugal - Who is the model?". Paper presented in International Meeting of the Portuguese Society of Genetics, 2020.
  7. Willam Oliveira da Silva; Marlyson J. Rodrigues da Costa; Julio C. Pieczarka; Jorge Rissino; Malcolm A. Ferguson-Smith; Jorge C Pereira; Cleusa Y. Nagamachi. Corresponding author: Cleusa Y. Nagamachi. "Neo-X chromosome: independent origin and maintenance of syntenic blocks in highly rearranged karyotypes from genus Proechimys J. A. Allen, 1899 (Rodentia-Echimyidae)". Paper presented in 23rd International Colloquium on Animal Cytogenetics and Genomics (23 ICACG) June 9–12, 2018, Saint-Petersburg, Russia, Saint-petersburg, 2018.
    Published
Conference poster
  1. Gonçalves-Anjo, Nuno; Jorge C Pereira; Ana Machado; Mafalda Saianda; Bastos, Estela; Ana C Matos; Gama, Adelina; et al. Corresponding author: Gonçalves-Anjo, Nuno. "Chronic wasting disease risk assessment in Portugal: analysis of variability and genetic structure of the Portuguese roe deer population". Paper presented in Prion 2022 Conference, 2022.
  2. Jorge C Pereira; Gonçalves-Anjo, Nuno; Bastos, Estela; Leonor Orge; Ana C Matos; Adelina Gama; Anabela Alves; et al. Corresponding author: Jorge C Pereira. "Determining prion protein gene (PRNP) genetic variability in Portuguese cervidae population. An important task in chronic wasting disease (CWD) risk assessment project in Portugal". Paper presented in Prion 2022 Conference, 2022.
Journal article
  1. Mouta, Nuno; Orge, Leonor; Vicente, Joana; Cabral, João Alexandre; Aranha, José; Carvalho, João; Torres, Rita Tinoco; et al. "Towards spatial predictions of disease transmission risk: classical scrapie spill-over from domestic small ruminants to wild cervids". Web Ecology 24 2 (2024): 47-57. http://dx.doi.org/10.5194/we-24-47-2024.
    10.5194/we-24-47-2024
  2. Jorge C. Pereira; Nuno Gonçalves-Anjo; Leonor Orge; Maria A. Pires; Sara Rocha; Luís Figueira; Ana C. Matos; et al. "Estimating sequence diversity of prion protein gene (PRNP) in Portuguese populations of two cervid species: red deer and fallow deer". Prion (2023): https://doi.org/10.1080/19336896.2023.2191540.
    10.1080/19336896.2023.2191540
  3. Romanenko, Svetlana A.; Kliver, Sergei F.; Serdyukova, Natalia A.; Perelman, Polina L.; Trifonov, Vladimir A.; Seluanov, Andrei; Gorbunova, Vera; et al. "Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human". Scientific Reports 13 1 (2023): http://dx.doi.org/10.1038/s41598-023-46595-x.
    10.1038/s41598-023-46595-x
  4. Horacio Naveira; Verónica Rojo; Iván Gómez-Seoane; Malcolm A. Ferguson-Smith; Jorge C. Pereira; Andrés Martínez-Lage. "Chromosome evolution in Iberolacerta, a genus that deviates from the standard karyotype formula of Lacertidae". Genetica (2023): https://doi.org/10.1007/s10709-023-00194-w.
    10.1007/s10709-023-00194-w
  5. Jorge Pereira. "Observations on chromosome-specific sequencing for the construction of cross-species chromosome homology maps and its resolution of human:alpaca homology". Molecular Cytogenetics 15 1 (2022): http://dx.doi.org/10.1186/s13039-022-00622-0.
    10.1186/s13039-022-00622-0
  6. Carvalho, Carlos A.; Furo, Ivanete O.; O’Brien, Patricia C. M.; Jorge C Pereira; O’Connor, Rebeca E.; Griffin, Darren; Ferguson-Smith, Malcolm; de Oliveira, Edivaldo Herculano Corrêa. "Comparative chromosome painting in Spizaetus tyrannus and Gallus gallus with the use of macro- and microchromosome probes". PLOS ONE 16 11 (2021): e0259905. http://dx.doi.org/10.1371/journal.pone.0259905.
    10.1371/journal.pone.0259905
  7. Alexandra Esteves; Vieira-Pinto, M.M.; Helder Quintas; Maria Leonor Orge; Adelina Gama; Anabela Alves; Seixas F; et al. "Scrapie at Abattoir: Monitoring, Control, and Differential Diagnosis of Wasting Conditions during Meat Inspection". Animals (2021): https://www.mdpi.com/2076-2615/11/11/3028.
    10.3390/ani11113028
  8. Lisachov, Artem P.; Tishakova, Katerina V.; Romanenko, Svetlana A.; Molodtseva, Anna S.; Prokopov, Dmitry Yu.; Jorge C Pereira; Ferguson-Smith, Malcolm A.; Borodin, Pavel M.; Trifonov, Vladimir A.. "Whole-chromosome fusions in the karyotype evolution ofSceloporus(Iguania, Reptilia) are more frequent in sex chromosomes than autosomes". Philosophical Transactions of the Royal Society B: Biological Sciences 376 1833 (2021): 20200099. http://dx.doi.org/10.1098/rstb.2020.0099.
    10.1098/rstb.2020.0099
  9. Svetlana A. Romanenko; Vladimir G. Malikov; Ahmad Mahmoudi; Feodor N. Golenishchev; Natalya A. Lemskaya; Jorge C. Pereira; Vladimir A. Trifonov; et al. "New Data on Comparative Cytogenetics of the Mouse-Like Hamsters (Calomyscus Thomas, 1905) from Iran and Turkmenistan". Genes 12 7 (2021): 964-964. https://doi.org/10.3390/genes12070964.
    10.3390/genes12070964
  10. "Neuropathology of Animal Prion Diseases". Biomolecules 11 3 (2021): 466-466. http://dx.doi.org/10.3390/biom11030466.
    10.3390/biom11030466
  11. "An 8.22 Mb Assembly and Annotation of the Alpaca (Vicugna pacos) Y Chromosome". Genes 12 1 (2021): 105-105. http://dx.doi.org/10.3390/genes12010105.
    10.3390/genes12010105
  12. Furo, Ivanete de Oliveira; Kretschmer, Rafael; O’Brien, Patricia C. M.; Jorge C Pereira; Gunski, Ricardo José; Garnero, Analía Del Valle; O’Connor, Rebecca E.; et al. "Cytotaxonomy of Gallinula melanops (Gruiformes, Rallidae): Karyotype evolution and phylogenetic inference". Genetics and Molecular Biology 44 2 (2021): http://dx.doi.org/10.1590/1678-4685-gmb-2020-0241.
    10.1590/1678-4685-gmb-2020-0241
  13. Bruno Busnello Kubiak; Rafael Kretschmer; Leonardo Trindade Leipnitz; Renan Maestri; Thamara Santos de Almeida; Leandro Rodrigues Borges; Daniel Galiano; et al. "Hybridization between subterranean tuco-tucos (Rodentia, Ctenomyidae) with contrasting phylogenetic positions". Scientific Reports (2020): https://doi.org/10.1038/s41598-020-58433-5.
    10.1038/s41598-020-58433-5
  14. Rafael Kretschmer; Ivanete de Oliveira Furo; Anderson José Baia Gomes; Lucas G. Kiazim; Ricardo José Gunski; Analía del Valle Garnero; Jorge C. Pereira; et al. "A Comprehensive Cytogenetic Analysis of Several Members of the Family Columbidae (Aves, Columbiformes)". Genes 11 6 (2020): 632-632. https://doi.org/10.3390/genes11060632.
    10.3390/genes11060632
  15. Jorge C Pereira. "Novel insights into chromosome evolution of Charadriiformes: extensive genomic reshuffling in the wattled jacana (Jacana jacana, Charadriiformes, Jacanidae)". Genetics and Molecular Biology (2020): http://dx.doi.org/10.1590/1678-4685-gmb-2019-0236.
    10.1590/1678-4685-gmb-2019-0236
  16. Tiago Marafiga Degrandi; Ivanete de Oliveira Furo; Edivaldo Herculano Correia de Oliveira; Alice Lemos Costa; Malcolm A. Ferguson-Smith; Patrícia C.M O’Brien; Jorge C. Pereira; et al. "Comparative chromosome painting in hummingbirds (Trochilidae)". Genetics and Molecular Biology (2020): https://doi.org/10.1590/1678-4685-gmb-2020-0162.
    10.1590/1678-4685-gmb-2020-0162
  17. Furo, ID; Kretschmer, R; O'Brien, PC; Pereira, JC; Garnero, AD; Gunski, RJ; O'Connor, RE; et al. "Chromosomal Evolution in the Phylogenetic Context: A Remarkable Karyotype Reorganization in Neotropical ParrotMyiopsitta monachus(Psittacidae)". FRONTIERS IN GENETICS (2020): https://www.authenticus.pt/P-00S-GZE.
    10.3389/fgene.2020.00721
  18. Lisachov, Artem P.; Giovannotti, Massimo; Pereira, Jorge C.; Andreyushkova, Daria A.; Romanenko, Svetlana A.; Ferguson-Smith, Malcolm A.; Borodin, Pavel M.; Trifonov, Vladimir A.. "Chromosome Painting Does Not Support a Sex Chromosome Turnover in Lacerta agilis Linnaeus, 1758". Cytogenetic and Genome Research 160 3 (2020): 134-140. http://dx.doi.org/10.1159/000506321.
    10.1159/000506321
  19. Barcellos, Suziane Alves; Kretschmer, Rafael; Souza, Marcelo Santos de; Costa, Alice Lemos; Degrandi, Tiago Marafiga; Lopes, Cassiane Furlan; Ferguson-Smith, Malcolm A.; et al. "Comparative analyses of three swallow species (Aves, Passeriformes, Hirundinidae): Insights on karyotype evolution and genomic organization". Genetics and Molecular Biology 43 1 (2020): http://dx.doi.org/10.1590/1678-4685-gmb-2019-0232.
    10.1590/1678-4685-gmb-2019-0232
  20. Furo, I.O.; Kretschmer, R.; O’brien, P.C.M.; Pereira, J.C.; Ferguson-Smith, M.A.; de Oliveira, E.H.C.. "Phylogenetic analysis and karyotype evolution in two species of core gruiformes: Aramides cajaneus and Psophia viridis". Genes 11 3 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85081605826&partnerID=MN8TOARS.
    10.3390/genes11030307
  21. Barcellos, S.A.; Kretschmer, R.; de Souza, M.S.; Costa, A.L.; Degrandi, T.M.; Lopes, C.F.; Ferguson-Smith, M.A.; et al. "Comparative analyses of three swallow species (Aves, passeriformes, hirundinidae): Insights on karyotype evolution and genomic organization". Genetics and Molecular Biology 43 1 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85081564430&partnerID=MN8TOARS.
    10.1590/1678-4685-GMB-2019-0232
  22. Willam Oliveira da Silva; Marlyson Jeremias Rodrigues da Costa; Julio Cesar Pieczarka; Jorge Rissino; Jorge C. Pereira; Malcolm Andrew Ferguson-Smith; Cleusa Yoshiko Nagamachi. "Identification of two independent X-autosome translocations in closely related mammalian (Proechimys) species". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-40593-8.
    10.1038/s41598-019-40593-8
  23. Edwards, Amy M.; Cameron, Elissa Z.; Deakin, Janine E.; Ezaz, Tariq; Pereira, Jorge C.; Ferguson-Smith, Malcolm A.; Robert, Kylie A.. "Sexual conflict in action: An antagonistic relationship between maternal and paternal sex allocation in the tammar wallaby, Notamacropus eugenii". Ecology and Evolution 9 8 (2019): 4340-4348. http://dx.doi.org/10.1002/ece3.4813.
    10.1002/ece3.4813
  24. Artem P. Lisachov; Alexey I. Makunin; Massimo Giovannotti; Jorge C. Pereira; Anna S. Druzhkova; Vincenzo Caputo Barucchi; Malcolm A. Ferguson-Smith; Vladimir A. Trifonov. "Genetic Content of the Neo-Sex Chromosomes in Ctenonotus and Norops (Squamata, Dactyloidae) and Degeneration of the Y Chromosome as Revealed by High-Throughput Sequencing of Individual Chromosomes". Cytogenetic and Genome Research (2019): https://doi.org/10.1159%2F000497091.
    10.1159/000497091
  25. Alessio Iannucci; Marie Altmanová; Claudio Ciofi; Malcolm Ferguson-Smith; Massimo Milan; Jorge Claudio Pereira; James Pether; et al. "Conserved sex chromosomes and karyotype evolution in monitor lizards (Varanidae)". Heredity (2019): https://doi.org/10.1038/s41437-018-0179-6.
    10.1038/s41437-018-0179-6
  26. Iannucci, A.; Altmanová, M.; Ciofi, C.; Ferguson-Smith, M.; Pereira, J.C.; Rehák, I.; Stanyon, R.; et al. "Isolating Chromosomes of the Komodo Dragon: New Tools for Comparative Mapping and Sequence Assembly". Cytogenetic and Genome Research (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85060205083&partnerID=MN8TOARS.
    10.1159/000496171
  27. Ivanete de Oliveira Furo; Rafael Kretschmer; Patrícia C. M. O’Brien; Jorge Pereira; Analía del Valle Garnero; Ricardo J. Gunski; Malcolm A. Ferguson-Smith; de Oliveira, EHC. "Chromosome Painting in Neotropical Long- and Short-Tailed Parrots (Aves, Psittaciformes): Phylogeny and Proposal for a Putative Ancestral Karyotype for Tribe Arini". Genes (2018): http://www.mdpi.com/2073-4425/9/10/491.
    10.3390/genes9100491
  28. Kasai, F.; O’Brien, P.C.M.; Pereira, J.C.; Ferguson-Smith, M.A.. "Marsupial chromosome dna content and genome size assessed from flow karyotypes: Invariable low autosomal gc content". Royal Society Open Science 5 8 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85053139069&partnerID=MN8TOARS.
    10.1098/rsos.171539
  29. Kretschmer, R.; de Oliveira Furo, I.; Gunski, R.J.; del Valle Garnero, A.; Pereira, J.C.; O?Brien, P.C.M.; Ferguson-Smith, M.A.; de Oliveira, E.H.C.; de Freitas, T.R.O.. "Comparative chromosome painting in Columbidae (Columbiformes) reinforces divergence in Passerea and Columbea". Chromosome Research 26 3 (2018): 211-223. http://www.scopus.com/inward/record.url?eid=2-s2.0-85048114390&partnerID=MN8TOARS.
    10.1007/s10577-018-9580-5
  30. Kasai, F.; Pereira, J.C.; Kohara, A.; Ferguson-Smith, M.A.. "Homologue-specific chromosome sequencing characterizes translocation junctions and permits allelic assignment". DNA Research 25 4 (2018): 353-360. http://www.scopus.com/inward/record.url?eid=2-s2.0-85048623911&partnerID=MN8TOARS.
    10.1093/dnares/dsy007
  31. Iannuzzi, A.; Pereira, J.; Iannuzzi, C.; Fu, B.; Ferguson-Smith, M.. "Pooling strategy and chromosome painting characterize a living zebroid for the first time". PLoS ONE 12 7 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85023604064&partnerID=MN8TOARS.
    10.1371/journal.pone.0180158
  32. Giovannotti, M.; Trifonov, V.A.; Paoletti, A.; Kichigin, I.G.; O’Brien, P.C.M.; Kasai, F.; Giovagnoli, G.; et al. "New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae)". Chromosoma 126 2 (2017): 245-260. http://www.scopus.com/inward/record.url?eid=2-s2.0-84961848523&partnerID=MN8TOARS.
    10.1007/s00412-016-0585-6
  33. Edwards, A.M.; Cameron, E.Z.; Pereira, J.C.; Wapstra, E.; Ferguson-Smith, M.A.; Horton, S.R.; Thomasson, K.. "Gestational experience alters sex allocation in the subsequent generation". Royal Society Open Science 3 7 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84978389138&partnerID=MN8TOARS.
    10.1098/rsos.160210
  34. Edwards, A.M.; Cameron, E.Z.; Pereira, J.C.; Ferguson-Smith, M.A.. "Paternal sex allocation: How variable is the sperm sex ratio?". Journal of Zoology 299 1 (2016): 37-41. http://www.scopus.com/inward/record.url?eid=2-s2.0-84953326036&partnerID=MN8TOARS.
    10.1111/jzo.12317
  35. Pereira, J.C.; Chaves, R.; Batista, F.M.; Guedes-Pinto, H.; Leltão, A.. "Cytogenetic characterization of the dwarf oyster ostrea stentina (Mollusca: Bivalvia) and comparative karyological analysis within Ostreinae". Journal of Shellfish Research 30 2 (2011): 211-216. http://www.scopus.com/inward/record.url?eid=2-s2.0-80052310478&partnerID=MN8TOARS.
    10.2983/035.030.0203
  36. Pereira, J.C.; Chaves, R.; Bastos, E.; Leitão, A.; Guedes-Pinto, H.. "An efficient method for genomic DNA extraction from different molluscs species". International Journal of Molecular Sciences 12 11 (2011): 8086-8095. http://www.scopus.com/inward/record.url?eid=2-s2.0-82255184210&partnerID=MN8TOARS.
    10.3390/ijms12118086
  37. Pereira, J.C.; Chaves, R.; Leitão, A.; Matias, D.; Guedes-Pinto, H.. "Genetic analysis of two Portuguese populations of Ruditapes decussatus by RAPD profiling". Helgoland Marine Research 65 3 (2011): 361-367. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051770274&partnerID=MN8TOARS.
    10.1007/s10152-010-0229-9
  38. Pereira, J.C.; Lino, P.G.; Leitão, A.; Joaquim, S.; Chaves, R.; Pousão-Ferreira, P.; Guedes-Pinto, H.; Neves dos Santos, M.. "Genetic differences between wild and hatchery populations of Diplodus sargus and D. vulgaris inferred from RAPD markers: Implications for production and restocking programs design". Journal of Applied Genetics 51 1 (2010): 67-72. http://www.scopus.com/inward/record.url?eid=2-s2.0-76649123115&partnerID=MN8TOARS.
    10.1007/bf03195712
  39. Joaquim, S.; Pereira, J.; Leitão, A.; Matias, D.; Chaves, R.; Guedes-Pinto, H.; Chícharo, L.; Gaspar, M.. "Genetic diversity of two Portuguese populations of the pullet carpet shell Venerupis senegalensis, based on RAPD markers: Contribution to a sustainable restocking program". Helgoland Marine Research 64 4 (2010): 289-295. http://www.scopus.com/inward/record.url?eid=2-s2.0-78449253286&partnerID=MN8TOARS.
    10.1007/s10152-009-0182-7
Preprint
  1. Jorge C. Pereira; Nuno Gonçalves-Anjo; Leonor Orge; Maria A. Pires; Sara Rocha; Luís Figueira; Ana C. Matos; et al. "Estimating sequence diversity of prion protein gene (PRNP) in Portuguese populations of two cervid species: red deer and fallow deer". 2022. https://doi.org/10.1101/2022.08.16.504133.
    10.1101/2022.08.16.504133
  2. Pereira, Jorge C.; Gonçalves-Anjo, Nuno; Orge, Leonor; Pires, Maria A.; Rocha, Sara; Figueira, Luís; Matos, Ana C.; et al. "Estimating sequence diversity of prion protein gene (PRNP) in Portuguese populations of two cervid species: red deer and fallow deer". 2022. http://dx.doi.org/10.1101/2022.08.16.504133.
    10.1101/2022.08.16.504133
Report
  1. Jorge C Pereira. 2023. VAEs-Deep Learning Tool for integrating different omics..

Other

Other output
  1. Chromosome evolution in a genus that deviates from the standard karyotype formula of Lacertidae. 2023. Naveira, H.; Rojo, V.; Gómez-Seoane, I.; Ferguson-Smith, M.A.; Pereira, J.C.; Martínez-Lage, A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85167629039&partnerID=MN8TOARS.
    10.21203/rs.3.rs-2917305/v1
  2. Whole-chromosome fusions in the karyotype evolution of Sceloporus (Iguania, Reptilia) are more intense in sex chromosomes than autosomes. 2020. Lisachov, A.P.; Tishakova, K.V.; Romanenko, S.A.; Molodtseva, A.S.; Prokopov, D.Yu.; Pereira, J.C.; Ferguson-Smith, M.A.; Borodin, P.M.; Trifonov, V.A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098909605&partnerID=MN8TOARS.
    10.1101/2020.03.31.011619
  3. Chromosome painting does not support a sex chromosome turnover in Lacerta agilis Linnaeus, 1758. 2019. Lisachov, A.P.; Giovannotti, M.; Pereira, J.C.; Andreyushkova, D.A.; Romanenko, S.A.; Ferguson-Smith, M.A.; Borodin, P.M.; Trifonov, V.A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095537112&partnerID=MN8TOARS.
    10.1101/846501
  4. DNA sequence publications in GenBank (NCBI) 5S and 18s rRNA. GenBank accession number JN797504: Ostrea edulis 5S rRNA gene and NTS GenBank accession number JN797505: Ostrea edulis 18S rRNA gene (partial), 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2) GenBank accession number JN797506: Ostrea stentina 5S rRNA gene and NTS. 2011. Jorge C Pereira. https://www.ncbi.nlm.nih.gov/nuccore/JN797504.1/.
Activities

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2023/09/01 - Current Estudo imunofenotípico e genómico do linfoma no cão: contribuição para a sua caracterização biopatológica e novas terapias direcionadas
Co-supervisor
Universidade de Trás-os-Montes e Alto Douro Centro de Ciência Animal e Veterinária, Portugal
2023/09/01 - Current Evolução do cariótipo de morcegos do género Myotis (ordem Chiroptera): uma abordagem citogenómica
Supervisor
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2022/09/01 - Current Análise citogenómica de algumas espécies de quirópteros de Portugal: o primeiro passo para a caracterização deste organismo modelo
Supervisor
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2021/09/01 - 2022/09/01 Aplicação de Técnicas de Citogenética e Genómica no estudo da Evolução do Cariótipo de Cobras da Península Ibérica
Supervisor
2021/09/01 - 2022/09/01 A phylogenetic and evolutionary analysis of transposable elements in the wolf (Canis lupus, Canidae, Carnivora) genome
Co-supervisor
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2022/05/19 - 2022/05/20 Membro da Comissão Organizadora do 10 Congresso Ibérico de Priões 2022, UTAD, Vila Real, Portugal, 19 a 20 Maio de 2022. (2022/05/19 - 2022/05/20)
Conference (Member of the Organising Committee)
Universidade de Trás-os-Montes e Alto Douro, Portugal

Event participation

Activity description
Type of event
Event name
Institution / Organization
2024 - Current RNA-Seq with Biocondutor in R in datacamp
Workshop
2023/01/17 - 2023/01/19 Ion Torrent Instrument Training
Workshop
Ion Torrent Instrument Training

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2021/04/04 Dynamics of transposable elements in spinal muscular atrophy cell models
(Thesis) Main arguer
ALBANO RIBEIRO PINTO (Master)
Universidade de Trás-os-Montes e Alto Douro, Portugal
2020/07/28 THE GENOME OF GENETTA GENETTA: CHROMOSOME ARCHITECTURE AND REPETITIVE FRACTION ANALYSSI
(Thesis) Main arguer
202603300 (Master)
Universidade de Tras-os-Montes e Alto Douro, Portugal

Ad Hoc journal article review

Journal title (ISSN) Publisher
2024 - Current Prion (1933-690X) Taylor & Francis Group
2012 - Current World Journal of Microbiology & Biotechnology (1573-0972) 1

Mentoring / Tutoring

Topic Student name
2012/08/01 - 2019/07/31 Tutorial/Mentoring several external PhD students Several Students
Distinctions

Award

2021 Prémio “Responsabilidade Social”, atribuído ao Centro de Testagem COVID-19 da UTAD, a 23 de Março de 2021 pela Universidade de Trás-os-Montes e Alto Douro, pelo reconhecimento do trabalho desenvolvido em prol da comunidade
Universidade de Trás-os-Montes e Alto Douro, Portugal
2015 Best Poster in 10th European Cytogenetics Conference (ECA) Strasbourg
European Cytogeneticists Association (E.C.A.), France