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Pedro Emanuel Ferreira dos Reis Vieira completed the Ph.D. in the end of 2017 at the Universidade de Aveiro. Currently, he is a Postdoc at Universidade do Minho. He (co)-author 20 peer-reviewed publications in international journals and more than 50 conference presentations/proceedings in international conferences. Reviewed 17 papers and he is editor of 1 special issue. He (co-)organized different workshops, advanced courses and conferences. (Co-)supervised 16 theses. Works on Bioinformatics, focusing on developing tools to study marine fauna. Specific interests are the programming language R and DNA(meta)barcoding.
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Identification

Personal identification

Full name
Pedro Emanuel Ferreira dos Reis Vieira

Citation names

  • Vieira, Pedro
  • Pedro E Vieira

Author identifiers

Ciência ID
F51E-BBEB-9D95
ORCID iD
0000-0003-4880-3323
Google Scholar ID
CYE5Qm8AAAAJ
Researcher Id
K-7608-2019

Addresses

  • Campus Universitário de Gualtar, Departamento de Biologia, 4710-057, Braga, Braga, Portugal (Professional)

Websites

Knowledge fields

  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Natural sciences - Biological Sciences
  • Natural sciences - Biological Sciences - Marine Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Proficiency (C2) Proficiency (C2) Proficiency (C2) Advanced (C1)
Spanish; Castilian Intermediate (B1) Advanced (C1) Intermediate (B1) Advanced (C1) Intermediate (B1)
French Elementary (A2) Elementary (A2) Elementary (A2) Elementary (A2) Elementary (A2)
Education
Degree Classification
2017/10/01 - 2018/05/30
Concluded
 Post-Graduation in Bioinformatics Analysis (Especialização pós-licenciatura)
Major in Bioinformatics
Universidad Pablo de Olavide, Spain
 9/10
2013/03/01 - 2017/10/31
Concluded
 Biology branch Molecular Biology and Genetics (Doutoramento)
Universidade de Aveiro, Portugal
"Biodiversity and evolution of the coastal peracaridean fauna of Macaronesia and Northeast Atlantic" (THESIS/DISSERTATION)
 Aprovado
2010 - 2011
Concluded
 Applied Biology branch in Molecular and Cellular Biology (Mestrado)
Universidade de Aveiro, Portugal
"Amino acid toxicity in zebrafish" (THESIS/DISSERTATION)
 17
2005/09 - 2010
Concluded
 Biology (Licenciatura)
Universidade de Aveiro, Portugal
"Estudo do gene msbA na resistência ao tributilestanho (TBT) em Aeromonas molluscorum" (THESIS/DISSERTATION)
 15
Affiliation

Science

Category
Host institution 		Employer
2018/03/01 - Current Postdoc (Research) Universidade do Minho, Portugal
Universidade do Minho, Portugal
2012/05 - 2013/02 Researcher (Research) Universidade de Aveiro, Portugal
2009 - 2010 Research Trainee (Research) Universidade de Coimbra Faculdade de Farmácia, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2018/09/01 - 2019/05 Invited Assistant Professor (University Teacher) Universidade do Minho, Portugal
Projects

Grant

Designation Funders
2020/03 - 2020/03 Crypticism in the marine realm: DNA barcode-based outlook into selected invertebrate taxa of the Eastern Mediterranean
CRE-INV
Principal investigator
Hellenic Centre for Marine Research (HCMR) , Greece
Ongoing
2009 - 2010 Virulence factors associated with antimicrobial resistance determinants among Escherichia coli and Klebsiella spp. environmental strains: potential impact on public health
ESCMID Research Grants 2010
Student
Universidade de Coimbra, Portugal
Concluded

Contract

Designation Funders
2019/07 - 2022/02 Early detection and monitoring of non-indigenous species (NIS) in coastal ecosystems based on high-throughput sequencing tools
PTDC/BIA-BMA/29754/2017
Researcher
Universidade do Minho, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2018/03/01 - 2019/06 Next-Sea: Next generation monitoring of coastal ecosystems in a scenario of global change
NORTE-01-0145-FEDER-0000032
Post-doc Fellow
Universidade do Minho, Portugal
Ongoing
2012/05 - 2013/02 DiverseShores - Testing associations between genetic and community diversity in European rocky shore environments
Provided by PTCRIS: 114526
Research Fellow
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded

Other

Designation Funders
2022/01/26 - Current Fish-DNA-Monitor: Supporting monitoring and management of fisheries resources in Guinea-Bissau through capacity-building on cutting-edge DNA-based approaches
FCT AGA-KHAN / 541703280 / 2019
Co-PI
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2022/01/01 - Current Phylogeography and glue-formation genes expression from Sicilian populations of the tube-building Sabellaria alveolata (Polychaeta, Sabellariidae): from local conservation to potential biomaterial insights
.
Researcher
Politechnika Lódzka, Poland
Ongoing
2021/09/01 - Current ATLANTIDA - Platform for the monitoring of the North Atlantic ocean and tools for the sustainable exploitation of the marine resources
NORTE-01-0145-FEDER-000040
Colaborator
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - Current RIVER2OCEAN: Socio-ecological and biotechnological solutions for the conservation and valorization of aquatic biodiversity in the Minho Region
NORTE-01-0145-FEDER-000068
Researcher
Universidade do Minho, Portugal
 European Regional Development Fund
Ongoing
2020/08/30 - Current Cutting-edge DNA-based approaches for improved monitoring and management of fisheries resources along Magellan-Elcano's Atlantic route
CIRCNA/BRB/0156/2019
Team member
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2021/10/30 Phylogenetic network inference for bioassessment and conservation
CPCA/A1/7359/2020
Principal investigator
Universidade do Minho, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2021/10/30 Meta-species analyses of patterns of molecular variation in marine fauna
CPCA/A1/7313/2020
Principal investigator
Universidade do Minho, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
Outputs

Publications

Conference paper
  1. Ana Lavrador; Fábio Amaral; Pedro E. Vieira; Filipe Costa; Sofia Duarte. "Surveillance of non-indigenous invertebrate species through DNA metabarcoding in recreational marinas in the North and Center of Portugal". 2020.
    Published • 10.3897/aca.4.e64900
  2. Marcos A. L. Teixeira; Arne Nygren; Ascensão Ravara; Pedro E. Vieira; José Carlos Hernández; Filipe O. Costa. "The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine habitats". 2020.
    10.3897/aca.4.e64937
  3. Bruno R. Sampieri; Pedro E Vieira; Marcos A.L. Teixeira; Antônia C. Z. Amaral; Filipe O. Costa. "Cryptic or cosmopolitan? Unveiling the Laeonereis culveri complex along South American estuaries through DNA barcoding". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
    Published
  4. Sofia Duarte; Pedro E Vieira; Filipe O. Costa. "Current status of the DNA barcode reference library of non-indigenous marine species occurring in European coastal regions". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
    Published
  5. Barbara Leite; Pedro E Vieira; Jesus Troncoso; Filipe O. Costa. "Combining artificial substrates, morphology and DNA metabarcoding for investigating macrozoobenthic communities in NW Iberia". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
    Published
  6. Maria Fais; Sofia Duarte; Pedro E Vieira; Ronaldo Sousa; M Hajibabaei; Carlos Alberto Canchaya; Filipe O. Costa. "Patterns of spatial and temporal variation in estuarine meiofaunal communities assessed through DNA metabarcoding: a case study in the Lima estuary (NW Portugal).". Paper presented in XX Iberian Symposium on Marine Biology Studies (SIEBM XX), 2019.
    Published
  7. Pedro E Vieira; Pedro Soares; Prof. Henrique Queiroga; Filipe O. Costa. "Evolutionary insights derived from comprehensive analyses of DNA barcoding diversity in marine members of the superorder Peracarida (Crustacea: Malacostraca)". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
    Published
  8. Maria Fais; Sofia Duarte; Pedro E Vieira; Ronaldo Sousa; M Hajibabaei; Carlos Alberto Canchaya; Filipe O. Costa. "Small-scale spatial variation of meiofaunal communities in Rio Lima estuary (NW Portugal) assessed through metabarcoding". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  9. Barbara Leite; Pedro E Vieira; Jesus Troncoso; Filipe O. Costa. "Biomonitoring coastal macrozoobenthic colonization of artificial substrates in NW Iberia using DNA metabarcoding". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  10. Bruno R. Sampieri; Antônia C. Z. Amaral; Pedro E Vieira; Marcos A.L. Teixeira; Filipe O. Costa. "Hidden diversity and deep divergence in a presumed broadly distributed polychaete along the Atlantic coast of Americas". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  11. Adriana E Radulovici; Filipe O. Costa; Hackathon Participants. "New avenues for data curation: hackathon on marine invertebrates". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  12. Pedro E Vieira; Prof. Henrique Queiroga; Filipe O. Costa. "Status and highlights of the global DNA barcode reference library for marine peracarids (Crustacea: Peracarida).". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  13. Pedro E Vieira; Andrea Desiderato; Sofia L Azevedo; Filipe O. Costa; Prof. Henrique Queiroga. "Prominent evolutionary divide between Macaronesian islands and nearby continental coasts in multiple peracarids (Crustacea): over 60 suspected new species". Paper presented in 8th International Barcode of Life Conference, 2019.
    Published
  14. Pedro E Vieira; Michael Raupach; Filipe O. Costa; Prof. Henrique Queiroga. "A DNA barcode reference library for the superorder Peracarida (Crustacea) from European coasts". Paper presented in 7th International Barcode of Life Conference, 2017.
    Published
  15. Pedro E Vieira; Michael Raupach; Prof. Henrique Queiroga; Filipe O. Costa. "Compiling a global DNA barcode reference library for marine amphipods (Crustacea: Amphipoda)". Paper presented in 18th International Colloquium on Amphipoda, 2017.
    Published
  16. Pedro E Vieira; David M Holdich; Nuno Gomes; Filipe O. Costa; Prof. Henrique Queiroga. "Deeply divergent DNA barcode lineages within Dynamene edwardsi (Isopoda) from the Northeast Atlantic suggest between four to eight cryptic species". Paper presented in XIX Iberian Symposium on Marine Biology Studies, Porto, 2016.
    Published • 10.3389/conf.fmars.2016.05.00079
  17. Pedro E Vieira; Nuno Gomes; Jorge Lobo; Luisa Borges; Prof. Henrique Queiroga; Filipe O. Costa. "A DNA barcode reference library for the superorder Peracarida (Crustacea) from the Southern European Atlantic coast". Paper presented in XIX Iberian Symposium on Marine Biology Studies, 2016.
    Published • 10.3389/conf.fmars.2016.05.00128
  18. Vieira, Pedro; Nuno Gomes; David M Holdich; Prof. Henrique Queiroga; Filipe Oliveira Costa. "Phylogeographic structure of Dynamene edwardsi (Crustacea: Isopoda) matches remarkably the sequential genesis of the Macaronesian islands". Paper presented in 6th International Barcode of Life Conference, Guelph, 2015.
    Published • 10.1139/gen-2015-0087
Conference poster
  1. Ana Sofia Lavrador; Fábio Amaral; Pedro E Vieira; Filipe O Costa; Duarte, Sofia. "Surveillance of non-indigenous invertebrate species through DNA metabarcoding in recreational marinas in the North and Center of Portugal". Paper presented in 1st DNAQUA International Conference, 2021.
  2. Marcos A.L. Teixeira; Nygren, Arne; Ascensão Ravara; Pedro E Vieira; JC Hernandez; Filipe O Costa. "The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine habitats". Paper presented in . 1st DNAQUA International Conference, 2021.
  3. João Tadeu Fontes; Pedro E Vieira; Ekrem, Torbjørn; Pedro Soares; Filipe O. Costa. "BAGS: an automated Barcode, Audit & Grade System for DNA barcode reference libraries of animal COI sequences". Paper presented in TiBE 2020 Metabarcoding and Metagenomics, 2020.
  4. Pedro E Vieira; Ana Sofia Lavrador; Manuela I. Parente; Paola Parretti; Ana C Costa; Filipe O. Costa; Sofia Duarte. "Estado das bibliotecas de referência de DNA barcodes de invertebrados marinhos da Macaronésia". Paper presented in XIX SPECO, 2020.
  5. Sofia Duarte; Pedro E Vieira; Filipe O. Costa. "Current status of the DNA barcode reference library of non-indigenous marine species occurring in European coastal regions". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
  6. Bruno R. Sampieri; Marcos AL Teixeira; Pedro E Vieira; Filipe O. Costa (7318-9608-6D8C); Antônia C. Z. Amaral. "How cryptic is cryptic? Combining histology with DNA barcoding to elucidate taxonomic ambiguities in polychaete species". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
  7. Bruno R. Sampieri; Pedro E Vieira; Marcos AL Teixeira; Antônia C. Z. Amaral; Filipe O. Costa. "Cryptic or cosmopolitan? Unveiling the Laeonereis culveri complex along South American estuaries through DNA barcoding". Paper presented in XX Iberian Symposium on Marine Biology Studies, 2019.
  8. Barbara Leite; Pedro E Vieira; Jesus Troncoso; Filipe O. Costa. "Combining artificial substrates, morphology and DNA metabarcoding for investigating marine amphipod communities in NW Iberia". Paper presented in 18th International Colloquium on Amphipoda, 2019.
  9. Pedro E Vieira; Andrea Desiderato; Filipe O. Costa (7318-9608-6D8C); Prof. Henrique Queiroga. "Distribution patterns of amphipod assemblages along the Iberian Atlantic rocky shores". Paper presented in 18th International Colloquium on Amphipoda, 2019.
  10. Maria Fais; Sofia Duarte; Pedro E Vieira; Ronaldo Sousa; M Hajibabaei; Carlos Alberto Canchaya; Filipe O. Costa. "Small-scale spatial variation of meiofaunal communities in Rio Lima estuary (NW Portugal) assessed through metabarcoding". Paper presented in 8th International Barcode of Life Conference, 2019.
  11. Barbara Leite; Pedro E Vieira; Jesus Troncoso; Filipe O. Costa. "Biomonitoring coastal macrozoobenthic colonization of artificial substrates in NW Iberia using DNA metabarcoding". Paper presented in 8th International Barcode of Life Conference, 2019.
  12. Bruno R. Sampieri; Pedro E Vieira; Antônia C. Z. Amaral; Marcos AL Teixeira; Filipe O. Costa. "Hidden diversity and deep divergence in a presumed broadly distributed polychaete along the Atlantic coast of Americas". Paper presented in 8th International Barcode of Life Conference, 2019.
  13. Pedro E Vieira; Prof. Henrique Queiroga; Filipe O. Costa. "Status and highlights of the global DNA barcode reference library for marine peracarids (Crustacea: Peracarida)". Paper presented in 8th International Barcode of Life Conference, 2019.
  14. Pedro E Vieira; Michael Raupach; Filipe O. Costa; Prof. Henrique Queiroga. "DNA barcode reference library for the superorder Peracarida (Crustacea) from European coasts". Paper presented in 7th International Barcode of Life Conference, 2017.
  15. Andrea Desiderato; Pedro E Vieira; Filipe O. Costa; Prof. Henrique Queiroga. "Cryptic diversity among two different peracaridean morphospecies in the Macaronesia region: implication for MPA management". Paper presented in Campus do Mar International Science Conference, 2016.
  16. Pedro E Vieira; Jorge Lobo; Maria Fais; Sofia Duarte; Prof. Henrique Queiroga; Filipe O. Costa. "Compiling a DNA barcode reference library for macrobenthic invertebrate fauna from the southern European Atlantic coast". Paper presented in Campus do Mar International Science Conference, 2016.
  17. Pedro E Vieira; Nuno Gomes; Jorge Lobo; Luisa Borges; Prof. Henrique Queiroga; Filipe O. Costa. "A DNA barcode reference library for the superorder Peracarida (Crustacea) from the Southern European Atlantic coast". Paper presented in XIX Iberian Symposium on Marine Biology Studies, 2016.
  18. Pedro E Vieira; Filipe O. Costa; Prof. Henrique Queiroga. "Distribution and genetic diversity of the isopod genus Dynamene in rockyshore environments in the NE Atlantic Ocean". Paper presented in IV Encontro Nacional de Pós-graduação em Ciências Biológicas, 2015.
  19. Nuno Mendonça; Joana Ramalho; Pedro E Vieira; A. Tavares; P. Pereira; Gabriela J da Silva. "Spread of plasmid-mediated quinolone resistance and pathogenic islands in Escherichia coli". Paper presented in 21st European Congress of Clinical Microbiology and Infectious Diseases, 2011.
  20. SS Domingues; Pedro E Vieira; I Starikova; Gabriela J da Silva; KM Nielsen. "Biological fitness effects of integrons in the absence of antibiotic selective pressure". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases, 2010.
  21. Nuno Mendonça; Pedro E Vieira; Joana Ramalho; MJ Saavedra; Gabriela J da Silva. "Antimicrobial resistance of Gram negative bacteria isolated from domestic and food-producing animals". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases, 2010.
  22. Nuno Mendonça; Joana Ramalho; Pedro E Vieira; A. Tavares; P. Pereira; Gabriela J da Silva. "Ocurrence of plasmid-mediated quinolone resistance genes and extended-spectrum beta-lactamases encoding genes among Gram-negative". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases, 2010.
Journal article
  1. Teixeira, Marcos A L; Vieira, Pedro E; Ravara, Ascensão; Costa, Filipe O; Nygren, Arne. "From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex". Zoological Journal of the Linnean Society (2022): http://dx.doi.org/10.1093/zoolinnean/zlab100.
    Published • 10.1093/zoolinnean/zlab100
  2. Barbara R. Leite; Pedro E. Vieira; Jesús S. Troncoso; Filipe O. Costa. "Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates". Metabarcoding and Metagenomics (2021): https://doi.org/10.3897/mbmg.5.70063.
    10.3897/mbmg.5.70063
  3. Adriana E. Radulovici; Pedro E. Vieira; Sofia Duarte; Marcos A. L. Teixeira; Luisa M. S. Borges; Bruce E. Deagle; Sanna Majaneva; et al. "Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon". Metabarcoding and Metagenomics (2021): https://doi.org/10.3897/mbmg.5.67862.
    10.3897/mbmg.5.67862
  4. Pedro E. Vieira; Ana S. Lavrador; Manuela I. Parente; Paola Parretti; Ana C. Costa; Filipe O. Costa; Sofia Duarte; Mat Seymour. "Gaps in DNA sequence libraries for Macaronesian marine macroinvertebrates imply decades till completion and robust monitoring". Diversity and Distributions (2021): https://doi.org/10.1111/ddi.13305.
    10.1111/ddi.13305
  5. Bruno R. Sampieri; Pedro E. Vieira; Marcos A. L. Teixeira; Victor C. Seixas; Paulo R. Pagliosa; Antonia Cecília Z. Amaral; Filipe O. Costa. "Molecular diversity within the genus Laeonereis (Annelida, Nereididae) along the west Atlantic coast: paving the way for integrative taxonomy". PeerJ (2021): https://doi.org/10.7717/peerj.11364.
    10.7717/peerj.11364
  6. João T. Fontes; Pedro E Vieira; Torbjørn Ekrem; Pedro Soares; Filipe O. Costa. "BAGS: An automated Barcode, Audit & Grade System for DNA barcode reference libraries". Molecular Ecology Resources 21 2 (2021): https://doi.org/10.1111/1755-0998.13262.
    Published • 10.1111/1755-0998.13262
  7. Sofia Duarte; Pedro E Vieira; Ana S. Lavrador; Filipe O. Costa. "Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding". Science of The Total Environment 751 141729 (2021): http://dx.doi.org/10.1016/j.scitotenv.2020.141729.
    Published • 10.1016/j.scitotenv.2020.141729
  8. Bruno R. Sampieri; Pedro E Vieira; Marcos A.L. Teixeira; Victor C Seixas; Paulo Pagliosa; Antônia C. Z. Amaral; Filipe Oliveira Costa. "Molecular diversity within the genus Laeonereis (Annelida, Nereididae) along the west Atlantic coast". Peer J (2021):
    Open access • Under revision
  9. Maria Fais; Sofia Duarte; Pedro E Vieira; Ronaldo Sousa; M Hajibabaei; Carlos Alberto Canchaya; Filipe O. Costa. "Small-scale spatial variation of meiofaunal communities in Lima estuary (NW Portugal) assessed through metabarcoding". Estuarine, Coastal and Shelf Science 238 106683 (2020): http://dx.doi.org/10.1016/j.ecss.2020.106683.
    Published • 10.1016/j.ecss.2020.106683
  10. Maria Fais; Bruno Bellisario; Sofia Duarte; Pedro E Vieira; Ronaldo Sousa; Carlos Alberto Canchaya; Filipe Oliveira Costa. "Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability". Regional Studies in Marine Science 38 (2020): 101341-101341. https://doi.org/10.1016/j.rsma.2020.101341.
    Published • 10.1016/j.rsma.2020.101341
  11. Sofia Duarte; Pedro E Vieira; Filipe O. Costa. "Assessment of species gaps in DNA barcode libraries of non-indigenous species (NIS) occurring in European coastal regions". Metabarcoding and Metagenomics 4 e55162 (2020): https://doi.org/10.3897/mbmg.4.55162.
    Open access • Published • 10.3897/mbmg.4.55162
  12. Leite, B.R.; Pedro E Vieira; Teixeira, M.A.L.; Lobo-Arteaga, J.; Hollatz, C.; Borges, L.M.S.; Duarte, S.; Troncoso, J.S.; Costa, F.O.. "Gap-analysis and annotated reference library for supporting macroinvertebrate metabarcoding in Atlantic Iberia". Regional Studies in Marine Science 36 (2020): 101307. http://dx.doi.org/10.1016/j.rsma.2020.101307.
    Open access • Published • 10.1016/j.rsma.2020.101307
  13. Bruno R. Sampieri; Tatiana M. Steiner; Priscila C. Baroni; Camila Fernanda da Silva; Marcos A. L. Teixeira; Pedro E Vieira; Filipe O. Costa; Antônia C. Z. Amaral. "How oogenesis analysis combined with DNA barcode can help to elucidate taxonomic ambiguities: a polychaete study-based approach". Biota Neotropica 20 3 (2020): e20200959. https://doi.org/10.1590/1676-0611-bn-2020-0959.
    Open access • Published • 10.1590/1676-0611-bn-2020-0959
  14. Marcos A. L. Teixeira; Pedro E Vieira; Fredrik Pleijel; Bruno R. Sampieri; Ascensão Ravara; Filipe O. Costa; Arne Nygren. "Molecular and morphometric analyses identify new lineages within a large Eumida (Annelida) species complex". Zoologica Scripta 49 2 (2019): 222-235. https://doi.org/10.1111/zsc.12397.
    Published • 10.1111/zsc.12397
  15. Andrea Desiderato; Filipe O. Costa; Cristiana S. Serejo; Marco Abbiati; Henrique Queiroga; Pedro E Vieira. "Macaronesian islands as promoters of diversification in amphipods: The remarkable case of the family Hyalidae (Crustacea, Amphipoda)". Zoologica Scripta 48 3 (2019): 359-375. https://doi.org/10.1111%2Fzsc.12339.
    Published • 10.1111/zsc.12339
  16. Pedro E Vieira; Andrea Desiderato; David M Holdich; Pedro Soares; Simon Creer; Prof. Gary Carvalho; Filipe Oliveira Costa; Prof. Henrique Queiroga. "Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates". Molecular Ecology 28 (2019): 1784-1800. https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15052.
    Published • 10.1111/mec.15052
  17. Pedro E Vieira; Queiroga, H.; Costa, F.O.; Holdich, D.M.. "Distribution and species identification in the crustacean isopod genus Dynamene Leach, 1814 along the North East Atlantic-Black Sea axis". ZooKeys 2016 635 (2016): 1-29. http://www.scopus.com/inward/record.url?eid=2-s2.0-84997124450&partnerID=MN8TOARS.
    Open access • Published • 10.3897/zookeys.635.10240
  18. R Hoen; EM Novoa; A López; N Camacho; L Cubells; Pedro E Vieira; Manuel Santos; et al. "Selective inhibition of an apicoplastic aminoacyl-tRNA synthetase from Plasmodium falciparum.". 14 4 (2013): 499-504. http://europepmc.org/abstract/med/23444099.
    Published • 10.1002/cbic.201200620
  19. Nuno Mendonça; Joana Ramalho; Pedro E Vieira; Gabriela J da Silva. "Association of plasmid-mediated quinolone resistance and virulence markers in Escherichia coli isolated from water.". 10 2 (2012): 288-294. http://europepmc.org/abstract/med/22717754.
    Published • 10.2166/wh.2012.153
Thesis / Dissertation
  1. Pedro E Vieira. "Biodiversity and evolution of the coastal peracaridean fauna of Macaronesia and Northeast Atlantic". PhD, Universidade de Aveiro, 2017.
  2. Pedro E Vieira. "Amino acid toxicity in zebrafish". Master, Universidade de Aveiro, 2011.
  3. Pedro E Vieira. "Study and correlation of msbA gene with Aeromonas molluscorum resistance to tributyltin". Degree, Universidade de Aveiro, 2009.

Other

Other output
  1. Molecular evidence for sweeping discontinuity between peracarid (Crustacea) fauna of Macaronesian islands and nearby continental coasts: over fifty candidate endemic species. 2021. Pedro E Vieira; Andrea Desiderato; Sofia L Azevedo; Patricia Esquete; Filipe O Costa; Henrique Queiroga. https://doi.org/10.1101/2021.06.22.449383.
    10.1101/2021.06.22.449383
  2. The spatial network structure of intertidal meiofaunal communities derived from environmental DNA metabarcoding surveys in Northwest Iberia. 2021. Bruno Bellisario; Maria Fais; Sofia Duarte; Pedro E. Vieira; Carlos Canchaya; Filipe O. Costa. https://doi.org/10.1101/2021.03.16.435605.
    10.1101/2021.03.16.435605
  3. BAGS: an automated Barcode, Audit & Grade System for DNA barcode reference libraries.. 2020. João Tadeu Fontes; Pedro E Vieira; Torbjorn Ekrem; Pedro Soares; Filipe Costa. https://doi.org/10.22541/au.159135669.99561145.
    10.22541/au.159135669.99561145
  4. Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding. 2020. Sofia Duarte; Pedro E Vieira; Ana Sofia Lavrador; Filipe O. Costa. https://www.biorxiv.org/content/10.1101/2020.05.25.114280v1.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2021/02 Novel insights into marine invertebrate biodiversity under a molecular perspective Assemble Plus
2020/12/09 Monitorizar espécies não indígenas em ecossistemas marinhos e costeiros através de abordagens moleculares: estaremos preparados? XIX SPECO
SPECO (Portugal)
2020/12/09 Deteção de espécies de invertebrados não-indígenas na marina de Viana de Castelo através do uso de DNA metabarcoding XIX SPECO
SPECO (Portugal)
2020/12/09 Surveillance of non-indigenous invertebrate species in recreational marinas in the North and Center of Portugal through DNA metabarcoding TiBE 2020 Metabarcoding and Metagenomics
Universidade do Porto (Portugal)
2020/12/09 Assessing the diversity of coastal macroinvertebrate assemblages growing in artificial substrates based on morphology and DNA metabarcoding approaches TiBE 2020 Metabarcoding and Metagenomics
Universidade do Porto (Portugal)
2020/10/26 Are we ready to monitor non-indigenous species in aquatic ecosystems through DNA metabarcoding? XX congress of the Iberian Association of Limnology
(Spain)
2019/09/10 Patterns of spatial and temporal variation in estuarine meiofaunal communities assessed through DNA metabarcoding: a case study in the Lima estuary (NW Portugal) XX Iberian Symposium on Marine Biology Studies
University of Minho (Braga, Portugal)
2019/09/10 Combining artificial substrates, morphology and DNA metabarcoding for investigating macrozoobenthic communities in NW Iberia XX Iberian Symposium on Marine Biology Studies. University of Minho
University of Minho (Braga, Portugal)
2019/09/10 Evolutionary insights derived from comprehensive analyses of DNA barcoding diversity in marine members of the superorder Peracarida (Crustacea: Malacostraca) XX Iberian Symposium on Marine Biology Studies
University of Minho (Braga, Portugal)
2019/08/26 Broad-scale DNA barcode-based meta-species analyses of patterns of molecular variation in Amphipoda from world's oceans 18th International Colloquium on Amphipoda
University Bourgogne Franche-Comté (Dijon, France)
2019/06/17 Prominent evolutionary divide between Macaronesian islands and nearby continental coasts in multiple peracarids (Crustacea): over 60 suspected new species 8th International Barcode of Life Conference
NTNU University Museum and the Norwegian Biodiversity Information Centre (Trondheim, Norway)
2019/04 Códigos de barras da vida Open Weekend to highschool students
Departamento de Biologia Universidade do Minho (Braga, Portugal)
2019/01 The hidden secret of Macaronesia islands: how small crustaceans can answer big questions Biology Department seminars
Departamento de Biologia Universidade do Minho (Braga, Portugal)
2018/08/08 Aquatic macroinvertebrates diversity and evolution: some novel perspectives after 15 years of DNA barcoding 3rd Central European Symposium for Aquatic Macroinvertebrates Research
University of Lodz (Lodz, Poland)
2018/07/08 Surveying estuarine meiobenthos through DNA metabarcoding: a pilot study in the Lima estuary (NW Portugal) 3rd Central European Symposium for Aquatic Macroinvertebrates Research
University of Lodz (Poland)
2017/10/08 Macaronesian islands as drivers of evolutionary diversification of two different peracaridean morphospecies III International Symposium of Ecology and Evolution
University of Federal de Viçosa (Brazil)
2017/09/04 Compiling a global DNA barcode reference library for marine amphipods (Crustacea: Amphipoda) 17th International Colloquium on Amphipoda
University of Trapani (Trapani, Italy)
2017/01 DNA barcoding unravels several cryptic species within the superorder Peracarida in Northeast Atlantic Ocean School of Natural Sciences seminars
Bangor University (Wales) (Bangor, United Kingdom)
2016/09/05 Deeply divergent DNA barcode lineages within Dynamene edwardsi (Isopoda) from the Northeast Atlantic suggest between four to eight cryptic species XIX Iberian Symposium on Marine Biology Studies
University of Porto (Porto, Portugal)
2015/09/07 First insights into phylogenetic relationships among the Atlantic and Mediterranean species of the family Hyalidae. 16th International Colloquium on Amphipoda
University of Aveiro (Aveiro, Portugal)
2015/08/18 Phylogeographic structure of Dynamene edwardsi (Crustacea: Isopoda) matches remarkably the sequential genesis of the Macaronesian islands. 6th International Barcode of Life Conference
University of Guelph (Guelph, Canada)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2021/02 - Current Exploring the use of environmental DNA to monitor the ichthyofauna and provide data to assist fish stock assessment in the Atlantic
Co-supervisor
 Ciências (PhD)
Universidade do Minho, Portugal
2021/01 - Current Optimization of DNA metabarcoding for the early detection and improved monitoring of non-indigenous species (NIS) in Portuguese coastal ecosystems
Co-supervisor
 Programa Doutoral em Biologia Molecular e Ambiental (PhD)
Universidade do Minho, Portugal
2021/01 - Current Meta-species screening for genetic divergence and phylogeographic reconstruction in Atlantic marine fish species
Co-supervisor
 Programa Doutoral em Biologia Molecular e Ambiental (PhD)
Universidade do Minho, Portugal
2021 - Current Develop a semi-automated system to evaluate species discrimination ability of genetic markers
Supervisor
 Bioinformática (Master)
Universidade do Minho, Portugal
2020/04 - Current Development of a user-friendly interface for DNA barcode compilation and assembly of a reference library
Supervisor
 Bioinformática (Master)
Universidade do Minho, Portugal
2020/01 - Current Broad-scale DNA barcode-based meta-species analyses of patterns of molecular variation in marine invertebrates
Supervisor
 Bioinformática (Master)
Universidade do Minho, Portugal
2021/05 - 2021/07 Use of bioinformatics tools to audit a DNA barcoding reference library of marine invasive species from Europe
Co-supervisor
 Biologia Aplicada (Degree)
Universidade do Minho, Portugal
2021/05 - 2021/07 The use of DNA metabarcoding for the detection and monitoring of exotic species in marine and coastal ecosystems
Co-supervisor
 Biologia Aplicada (Degree)
Universidade do Minho, Portugal
2021/04 - 2021/07 Compilation of a Macaronesian marine invertebrate species library from a molecular perspective
Supervisor
 Biologia Aplicada (Degree)
Universidade do Minho, Portugal
2019/03 - 2019/06 Biodiversity of the marine invertebrates of Moroccan coasts.
Supervisor
 Biologia Aplicada (Degree)
Universidade do Minho, Portugal
2019/03 - 2019/06 Biodiversity of the marine invertebrates of the islands of Macaronesia
Supervisor
 Biologia Aplicada (Degree)
Universidade do Minho, Portugal
2019/03 - 2019/06 Monitoring of native and non-indigenous species (NIS) in coastal ecosystems based on molecular tools
Co-supervisor
 Bioquímica (Degree)
Universidade do Minho, Portugal
2019 - 2019 Compilation, gap analyses and evaluation of species discrimination ability of reference libraries of DNA barcodes
Co-supervisor
 Bioinformática (Specialization course)
Universidade do Minho, Portugal
2019 - 2019 Broad-scale DNA barcode-based meta-species analyses of patterns of molecular variation in marine Amphipoda (Crustacea)
Co-supervisor
 Bioinformática (Specialization course)
Universidade do Minho, Portugal
2019 - 2019 Development of a semi-automated system for auditing and annotation of reference DNA barcode libraries
Co-supervisor
 Bioinformática (Specialization course)
Universidade do Minho, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2020/02/06 - 2020/03/18 Organizer and tutor of the "R SESSIONS": it consists of 6 advanced courses to learn R - https://cbma.uminho.pt/events/rsessions/ (2020/02/06 - 2020/03/18)
Workshop (President of the Organising Committee)
 Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2020/02/19 - 2020/02/19 Invited to organize and teach the workshop "Introduction to DNA barcoding Bioinformatics" during the "Bioinformatics Open Days" conference: http://www.bioinformaticsopendays.com/ (2020/02/19 - 2020/02/19)
Workshop (President of the Organising Committee)
 Universidade do Minho Centro de Engenharia Biológica, Portugal
2019/09/09 - 2019/09/12 Staff member and chair of two sessions: "XX Iberian Symposium on Marine Biology Studies (SIEBM XX)". University of Minho, Braga, Portugal. September 09-12, 2019: 20thsiebm.org. (2019/09/09 - 2019/09/12)
Conference (Co-organisor)
 Universidade do Minho, Portugal
2019/08/30 - 2019/08/30 Co-organizer and co-tutor of the "BOLD" Workshop that occurred during the "18th International Colloquium on Amphipoda": https://blog.u-bourgogne.fr/ica2019/bold-workshop/ (2019/08/30 - 2019/08/30)
Workshop (Co-organisor)
 Université de Bourgogne, France
2015/09/07 - 2015/09/11 Organizing committee. 16th International Colloquium on Amphipoda. 16ica.web.ua.pt. (2015/09/07 - 2015/09/11)
Conference (Member of the Organising Committee)
 Universidade de Aveiro, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2021/06/15 - Current NIS-DNA: developing and implementing DNA-based tools for detection and monitoring of non-indigenous species (NIS) in Portuguese coastal ecosystems
Symposium
 Biological Invasions in the Red Sea: emerging challenges and opportunities
King Abdullah University of Science and Technology, Saudi Arabia
2021/02/08 - 2021/02/12 Invited as a lecturer to the advanced course: "Plankton in a changing World" from the University of Aveiro
Workshop
 Plankton in a changing World
Universidade de Aveiro, Portugal
2020/11 - 2020/11 Noite dos Investigadores: "Será que consegues encontrar espécies invasoras através do seu ADN nos portos de Portugal?".
Other
 Noite dos Investigadores
2019/06 - 2019/06 Invited to the Hackathon on "Marine invertebrate biodiversity" to compile and edit data from the database BOLD.
Workshop
 Hackathon on "Marine invertebrate biodiversity"
Norges teknisk-naturvitenskapelige universitet Universitetsbiblioteket, Norway
2019/02/28 - 2019/03/01 Invited to the DNAquaNet Workshop Meeting "HPC-HTC for metabarcoding" to discuss new bioinformatics tools to analyze metabarcoding data
Workshop
 DNAquaNet Workshop Meeting "HPC-HTC for metabarcoding"
IN2P3’s Computing Centre , France
2018/12 - 2018/12 Participation in the DNAquaNet & EnvMetaGen Workshop "Mainstreaming molecular approaches in national environmental monitoring programs of aquatic ecosystems and biodiversity". Porto, Portugal, 2018.
Symposium
 Mainstreaming molecular approaches in national environmental monitoring programs of aquatic ecosystems and biodiversity
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2021/09/28 Mitochondrial DNA phylogeography of African lineages
(Thesis) Main arguer
 Luísa Carolina Azevedo de Sá (Master)
Universidade do Minho, Portugal

Ad Hoc journal article review

Journal title (ISSN) Publisher
2022 - 2022 animals (2076-2615) MDPI
2021 - 2021 Diversity MDPI
2021 - 2021 Peerj (2167-8359) PeerJ
2021 - 2021 Life (2075-1729) MDPI
2021 - 2021 Zookeys (1313-2970) Pensoft
2020 - 2021 Thalassas: An International Journal of Marine Sciences Springer
2019/01 - 2021 Scientific Reports (2045-2322) Springer Science and Business Media LLC
2019/10 - 2019/12 NeoBiota (1314-2488) Pensoft Publishers
2019/09 - 2019/10 Continental Shelf Research (0278-4343) Elsevier
2019/04 - 2019/08 PLoS ONE (1932-6203) Public Library of Science
2019/05 - 2019/05 BioInvasions Records (2242-1300) Regional Euro-Asian Biological Invasions Centre Oy - REABIC

Conference scientific committee

Conference name Conference host
2021/01 - 2021/02 1st DNAQUA International Conference DNAqua-Net Management Team & INRAE, France & University of Duisburg-Essen, Germany

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2019/02 - 2019/05 Biogeography Geografia e Planeamento (Licenciatura) Universidade do Minho - Campus de Azurém, Portugal
2019/02 - 2019/04 Biodiversity and Global Changes Biologia Aplicada (Licenciatura) Universidade do Minho, Portugal
2018/09 - 2019/02 Molecular Ecology Ecologia (Mestrado) Universidade do Minho, Portugal

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2019/11 iBOL Barcode bulletin, highlighted in National activities (November 2019): https://ibol.org/barcodebulletin/nation-activities/dna-barcoding-at-the-iberian-symposium-on-marine-biology-studies/ iBOL Barcode bulletin
2019/06/10 Uma equipa, que inclui três investigadores da Universidade do Minho (UMinho) e outros da Universidade de Aveiro, em conjunto com investigadores do Brasil, Itália e Reino Unido, descobriu 34 novas espécies de invertebrados marinhos nos arquipélagos dos Açores, Madeira e Canárias (a Macaronésia), que não existem em mais nenhum local do mundo. Correio do Minho
2019/06/07 Uma equipa das universidades do Minho e Aveiro, em conjunto com investigadores do Brasil, Itália e Reino Unido, descobriu 34 novas espécies de invertebrados marinhos nos arquipélagos dos Açores, Madeira e Canárias (a Macaronésia), que não existem em mais nenhum local do mundo. Correio dos Açores
2019/06/04 Uma equipa das universidades do Minho e Aveiro, em conjunto com investigadores do Brasil,Itália e Reino Unido, descobriu 34 prováveis novas espécies de invertebrados marinhos nos arquipélagos dos Açores, Madeira e Canárias (a Macaronésia), que não existem em mais nenhum local do mundo. Diário do Minho
2019/04 iBOL Barcode bulletin, highlighted in research section (April 2019): https://ibol.org/barcodebulletin/research/the-diversification-and-evolution-of-marine-invertebrates-in-oceanic-islands. doi: 10.21083/ibol.v9i1.5477. iBOL Barcode bulletin

Interview (tv / radio show)

Program Topic
2020/03 - 2020/03 Euronews What's killing our underwater ecosystems
2019/06/06 - 2019/06/06 UM I&D Programa sobre ciência

Journal scientific committee

Journal title (ISSN) Publisher
2021/01 - Current Life MDPI

Mentoring / Tutoring

Topic Student name
2020/05 - 2020/07 Biologia Aplicada Vitor Alves
2015 - 2015 First insights into phylogenetic relationships among the Atlantic and Mediterranean species of the family Hyalidae Andrea Desiderato