| Journal article |
- Sonja L. Knowles; Huzefa A. Raja; Israa H. Isawi; Laura Flores-Bocanegra; Patricia H. Reggio; Cedric J. Pearce; Joanna E.
Burdette; Antonis Rokas; Nicholas H. Oberlies. "Wheldone: Characterization of a Unique Scaffold from the Coculture of Aspergillus
fischeri and Xylaria flabelliformis". Organic Letters (2020): https://doi.org/10.1021/acs.orglett.0c00219.
10.1021/acs.orglett.0c00219
- D Libkind; D Peris; F A Cubillos; J L Steenwyk; D A Opulente; Q K Langdon; A Rokas; C T Hittinger. "Into the wild: new yeast
genomes from natural environments and new tools for their analysis". FEMS Yeast Research (2020): https://doi.org/10.1093/femsyr/foaa008.
10.1093/femsyr/foaa008
- Antonis Rokas; Donald C. Sheppard; Matthew E. Mead; Jacob L. Steenwyk; Nicholas H. Oberlies; Gustavo H. Goldman. "Evolving
moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity". PLOS
Pathogens (2020): https://doi.org/10.1371/journal.ppat.1008315.
10.1371/journal.ppat.1008315
- Sonja L. Knowles; Matthew E. Mead; Lilian Pereira Silva; Huzefa A. Raja; Jacob L. Steenwyk; Gustavo H. Goldman; Nicholas H.
Oberlies; Antonis Rokas; Yong-Sun Bahn. "Gliotoxin, a Known Virulence Factor in the Major Human Pathogen Aspergillus fumigatus,
Is Also Biosynthesized by Its Nonpathogenic Relative Aspergillus fischeri". mBio (2020): https://doi.org/10.1128/mBio.03361-19.
10.1128/mBio.03361-19
- Antonis Rokas; Matthew E. Mead; Jacob L. Steenwyk; Huzefa A. Raja; Nicholas H. Oberlies. "Biosynthetic gene clusters and the
evolution of fungal chemodiversity". Natural Product Reports (2020): https://doi.org/10.1039/C9NP00045C.
10.1039/C9NP00045C
- Sonja L. Knowles; Ngoc Vu; Daniel A. Todd; Huzefa A. Raja; Antonis Rokas; Qibin Zhang; Nicholas H. Oberlies. "Orthogonal Method
for Double-Bond Placement via Ozone-Induced Dissociation Mass Spectrometry (OzID-MS)". Journal of Natural Products
(2019): https://doi.org/10.1021/acs.jnatprod.9b00787.
10.1021/acs.jnatprod.9b00787
- Jacob L. Steenwyk; Antonis Rokas. "Treehouse: a user-friendly application to obtain subtrees from large phylogenies". BMC
Research Notes (2019): https://doi.org/10.1186/s13104-019-4577-5.
10.1186/s13104-019-4577-5
- Ina Bodinaku; Jason Shaffer; Allison B. Connors; Jacob L. Steenwyk; Megan N. Biango-Daniels; Erik K. Kastman; Antonis Rokas;
et al. "Rapid Phenotypic and Metabolomic Domestication of Wild Penicillium Molds on Cheese". mBio (2019): https://doi.org/10.1128/mBio.02445-19.
10.1128/mBio.02445-19
- Claudio Greco; Nancy P Keller; Antonis Rokas. "Unearthing fungal chemodiversity and prospects for drug discovery". Current
Opinion in Microbiology 51 (2019): 22-29. https://doi.org/10.1016/j.mib.2019.03.002.
10.1016/j.mib.2019.03.002
- Matthew E. Mead; Huzefa A. Raja; Jacob L. Steenwyk; Sonja L. Knowles; Nicholas H. Oberlies; Antonis Rokas; Jason E. Stajich.
"Draft Genome Sequence of the Griseofulvin-Producing Fungus Xylaria flabelliformis Strain G536". Microbiology Resource
Announcements (2019): https://doi.org/10.1128/MRA.00890-19.
10.1128/MRA.00890-19
- David A. Baltrus; Christina A. Cuomo; John J. Dennehy; Julie C. Dunning Hotopp; Julia A. Maresca; Irene L. G. Newton; David
A. Rasko; et al. "Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity".
Microbiology Resource Announcements (2019): https://doi.org/10.1128/MRA.00954-19.
10.1128/MRA.00954-19
- Jiyun M. Moon; John A. Capra; Patrick Abbot; Antonis Rokas. "Immune Regulation in Eutherian Pregnancy: Live Birth Coevolved
with Novel Immune Genes and Gene Regulation". BioEssays 41 9 (2019): 1900072-1900072. https://doi.org/10.1002/bies.201900072.
10.1002/bies.201900072
- Zackery A Ely; Jiyun M Moon; Gregory R Sliwoski; Amandeep K Sangha; Xing-Xing Shen; Abigail L Labella; Jens Meiler; et al.
"The Impact of Natural Selection on the Evolution and Function of Placentally Expressed Galectins". Genome Biology and
Evolution (2019): https://doi.org/10.1093/gbe/evz183.
10.1093/gbe/evz183
- Jiyun M. Moon; John A. Capra; Patrick Abbot; Antonis Rokas. "Signatures of Recent Positive Selection in Enhancers Across 41
Human Tissues". G3: Genes|Genomes|Genetics 9 8 (2019): 2761-2774. https://doi.org/10.1534/g3.119.400186.
10.1534/g3.119.400186
- Abigail L. LaBella; Gregory S. Barsh; Dana A. Opulente; Jacob L. Steenwyk; Chris Todd Hittinger; Antonis Rokas. "Variation
and selection on codon usage bias across an entire subphylum". PLOS Genetics 15 7 (2019): e1008304-e1008304. https://doi.org/10.1371/journal.pgen.1008304.
10.1371/journal.pgen.1008304
- Jacob L. Steenwyk; Xing-Xing Shen; Abigail L. Lind; Gustavo H. Goldman; Antonis Rokas; Jon P. Boyle. "A Robust Phylogenomic
Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium". mBio 10
4 (2019): https://doi.org/10.1128/mBio.00925-19.
10.1128/mBio.00925-19
- Shan Gao; Scott E. Gold; Jennifer H. Wisecaver; Yong Zhang; Li Guo; Li-Jun Ma; Antonis Rokas; Anthony E. Glenn. "Genome-wide
analysis of Fusarium verticillioides reveals inter-kingdom contribution of horizontal gene transfer to the expansion of metabolism".
Fungal Genetics and Biology (2019): https://doi.org/10.1016/j.fgb.2019.04.002.
10.1016/j.fgb.2019.04.002
- Yuyu Wang; Xiaofan Zhou; Liming Wang; Xingyue Liu; Ding Yang; Antonis Rokas. "Gene Selection and Evolutionary Modeling Affect
Phylogenomic Inference of Neuropterida Based on Transcriptome Data". International Journal of Molecular Sciences 20
5 (2019): 1072-1072. https://doi.org/10.3390/ijms20051072.
10.3390/ijms20051072
- Samuel P Smith; Julie B Phillips; Maddison L Johnson; Patrick Abbot; John A Capra; Antonis Rokas. "Genome-wide association
analysis uncovers variants for reproductive variation across dog breeds and links to domestication". Evolution, Medicine,
and Public Health (2019): https://doi.org/10.1093/emph/eoz015.
10.1093/emph/eoz015
- Dos Reis, Thaila Fernanda; Silva, Lilian Pereira; de Castro, Patrícia Alves; do Carmo, Rafaela Andrade; Marini, Marjorie Mendes;
da Silveira, José Franco; Ferreira, Beatriz Henriques; et al. "The Aspergillus fumigatus Mismatch Repair MSH2 Homolog Is Important
for Virulence and Azole Resistance". (2019): http://hdl.handle.net/1822/62292.
10.1128/mSphere.00416-19
- Antonis Rokas; Jennifer H. Wisecaver; Abigail L. Lind. "The birth, evolution and death of metabolic gene clusters in fungi".
Nature Reviews Microbiology 16 12 (2018): 731-744. https://doi.org/10.1038/s41579-018-0075-3.
10.1038/s41579-018-0075-3
- Haley R. Eidem; Jacob L. Steenwyk; Jennifer H. Wisecaver; John A. Capra; Patrick Abbot; Antonis Rokas. "integRATE: a desirability-based
data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm
birth". BMC Medical Genomics 11 1 (2018): https://doi.org/10.1186/s12920-018-0426-y.
10.1186/s12920-018-0426-y
- Ella Shtifman Segal; Vladimir Gritsenko; Anton Levitan; Bhawna Yadav; Naama Dror; Jacob L. Steenwyk; Yael Silberberg; et al.
"Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida
albicans". mBio (2018): https://doi.org/10.1128/mBio.02048-18.
10.1128/mBio.02048-18
- David J. Krause; Jacek Kominek; Dana A. Opulente; Xing-Xing Shen; Xiaofan Zhou; Quinn K. Langdon; Jeremy DeVirgilio; et al.
"Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts". Proceedings of
the National Academy of Sciences 115 43 (2018): 11030-11035. https://doi.org/10.1073/pnas.1806268115.
10.1073/pnas.1806268115
- Ming-Yueh Wu; Matthew E. Mead; Mi-Kyung Lee; Erin M. Ostrem Loss; Sun-Chang Kim; Antonis Rokas; Jae-Hyuk Yu; Gustavo H. Goldman.
"Systematic Dissection of the Evolutionarily Conserved WetA Developmental Regulator across a Genus of Filamentous Fungi".
mBio (2018): https://doi.org/10.1128/mBio.01130-18.
10.1128/mBio.01130-18
- Fang Yun Lim; Tae Hyung Won; Nicholas Raffa; Joshua A. Baccile; Jen Wisecaver; Antonis Rokas; Frank C. Schroeder; Nancy P.
Keller; Gustavo H. Goldman. "Fungal Isocyanide Synthases and Xanthocillin Biosynthesis in Aspergillus fumigatus". mBio
9 3 (2018): https://doi.org/10.1128/mBio.00785-18.
10.1128/mBio.00785-18
- Aaron L. Fidler; Sergei P. Boudko; Antonis Rokas; Billy G. Hudson. "The triple helix of collagens – an ancient protein structure
that enabled animal multicellularity and tissue evolution". Journal of Cell Science (2018): https://doi.org/10.1242/jcs.203950.
10.1242/jcs.203950
- Gonçalves C; Wisecaver JH; Kominek J; Oom MS; Leandro MJ; Shen XX; Opulente DA; et al. "Evidence for loss and reacquisition
of alcoholic fermentation in a fructophilic yeast lineage.". eLife (2018): http://europepmc.org/abstract/med/29648535.
10.7554/elife.33034
- Abigail L. Lind; Fang Yun Lim; Alexandra A. Soukup; Nancy P. Keller; Antonis Rokas; Aaron P. Mitchell. "An LaeA- and BrlA-Dependent
Cellular Network Governs Tissue-Specific Secondary Metabolism in the Human Pathogen Aspergillus fumigatus". mSphere
3 2 (2018): https://doi.org/10.1128/mSphere.00050-18.
10.1128/mSphere.00050-18
- Moon JM; Aronoff DM; Capra JA; Abbot P; Rokas A. "Examination of Signatures of Recent Positive Selection on Genes Involved
in Human Sialic Acid Biology.". G3 (Bethesda, Md.) (2018): http://europepmc.org/abstract/med/29467190.
10.1534/g3.118.200035
- Opulente DA; Rollinson EJ; Bernick-Roehr C; Hulfachor AB; Rokas A; Kurtzman CP; Hittinger CT. "Factors driving metabolic diversity
in the budding yeast subphylum.". BMC biology (2018): http://europepmc.org/abstract/med/29499717.
10.1186/s12915-018-0498-3
- Xiaofan Zhou; Xing-Xing Shen; Chris Todd Hittinger; Antonis Rokas. "Evaluating Fast Maximum Likelihood-Based Phylogenetic
Programs Using Empirical Phylogenomic Data Sets". Molecular Biology and Evolution 35 2 (2018): 486-503. https://doi.org/10.1093/molbev/msx302.
10.1093/molbev/msx302
- Katherine Young Bezold Lamm; Maddison L Johnson; Julie Baker Phillips; Michael B Muntifering; Jeanne M James; Helen N Jones;
Raymond W Redline; Antonis Rokas; Louis J Muglia. "Inverted formin 2 regulates intracellular trafficking, placentation, and
pregnancy outcome". eLife 7 (2018): https://doi.org/10.7554/eLife.31150.
10.7554/eLife.31150
- Gonçalves, Carla; Wisecaver, Jennifer H.; Kominek, Jacek; Oom, Madalena Salema; Leandro, Maria José; Shen, Xing-Xing; Opulente,
Dana A.; et al. "Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage". (2018): http://hdl.handle.net/10400.9/3051.
- Gonçalves, Carla; Wisecaver, Jennifer H.; Kominek, Jacek; Oom, Madalena Salema; Leandro, Maria José; Shen, Xing-Xing; Opulente,
Dana A.; et al. "Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage". (2018): http://hdl.handle.net/10400.26/30510.
10.7554/eLife.33034
- Steenwyk JL; Rokas A. "Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation.".
Frontiers in microbiology (2018): http://europepmc.org/abstract/med/29520259.
10.3389/fmicb.2018.00288
- Liyuan Zhao; Xiaofan Zhou; Antonis Rokas; Roger D. Cone. "Functional variants of the melanocortin-4 receptor associated with
the Odontoceti and Mysticeti suborders of cetaceans". Scientific Reports (2017):
10.1038/s41598-017-05962-1
- Rokas, Antonis. "Embracing Uncertainty in Reconstructing Early Animal Evolution.". Current biology : CB (2017): http://europepmc.org/abstract/med/29017048.
10.1016/j.cub.2017.08.054
- Rokas, Antonis. "Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.". The EMBO
journal (2017): http://europepmc.org/abstract/med/29054852.
10.15252/embj.201797833
- Haley R. Eidem; Kriston L. McGary; John A. Capra; Patrick Abbot; Antonis Rokas. "The transformative potential of an integrative
approach to pregnancy". Placenta 57 (2017): 204-215. https://doi.org/10.1016/j.placenta.2017.07.010.
10.1016/j.placenta.2017.07.010
- Rokas, Antonis. "MybA, a transcription factor involved in conidiation and conidial viability of the human pathogen Aspergillus
fumigatus.". Molecular microbiology (2017): http://europepmc.org/abstract/med/28677124.
10.1111/mmi.13744
- Lisa J. Lojek; Allison J. Farrand; Jennifer H. Wisecaver; Crysten E. Blaby-Haas; Brian W. Michel; Sabeeha S. Merchant; Antonis
Rokas; Eric P. Skaar; Craig D. Ellermeier. "Chlamydomonas reinhardtii LFO1 Is an IsdG Family Heme Oxygenase". mSphere
2 4 (2017): https://doi.org/10.1128/mSphere.00176-17.
10.1128/mSphere.00176-17
- J Dylan Shropshire; Antonis Rokas. "Correction: Heredity: The gene family that cheats Mendel". eLife 6 (2017): https://doi.org/10.7554/eLife.31295.
10.7554/eLife.31295
- J Dylan Shropshire; Antonis Rokas. "The gene family that cheats Mendel". eLife 6 (2017): https://doi.org/10.7554/eLife.28567.
10.7554/eLife.28567
- J Dylan Shropshire; Antonis Rokas. "The gene family that cheats Mendel". eLife 6 (2017): https://doi.org/10.7554%2Felife.28567.
10.7554/elife.28567
- Ming-Yueh Wu; Matthew E. Mead; Sun-Chang Kim; Antonis Rokas; Jae-Hyuk Yu; Steven Harris. "WetA bridges cellular and chemical
development in Aspergillus flavus". PLOS ONE 12 6 (2017): e0179571-e0179571. https://doi.org/10.1371%2Fjournal.pone.0179571.
10.1371/journal.pone.0179571
- Xing-Xing Shen; Chris Todd Hittinger; Antonis Rokas. "Contentious relationships in phylogenomic studies can be driven by a
handful of genes". Nature Ecology & Evolution 1 5 (2017): https://doi.org/10.1038/s41559-017-0126.
10.1038/s41559-017-0126
- Jacob Steenwyk; Antonis Rokas. "Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae
Wine Strains". G3: Genes|Genomes|Genetics 7 5 (2017): 1475-1485. https://doi.org/10.1534/g3.117.040105.
10.1534/g3.117.040105
- Jennifer H. Wisecaver; Alexander T. Borowsky; Vered Tzin; Georg Jander; Daniel J. Kliebenstein; Antonis Rokas. "A Global Coexpression
Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants". The Plant Cell 29 5 (2017): 944-959.
https://doi.org/10.1105/tpc.17.00009.
10.1105/tpc.17.00009
- Aaron L Fidler; Carl E Darris; Sergei V Chetyrkin; Vadim K Pedchenko; Sergei P Boudko; Kyle L Brown; W Gray Jerome; et al.
"Collagen IV and basement membrane at the evolutionary dawn of metazoan tissues". eLife 6 (2017): https://doi.org/10.7554/eLife.24176.
10.7554/eLife.24176
- Abbot P; Rokas A. "Mammalian pregnancy.". (2017): http://europepmc.org/abstract/med/28222284.
10.1016/j.cub.2016.10.046
- Lind, Abigail L.; Wisecaver, Jennifer H.; Lameiras, Catarina; Wiemann, Philipp; Palmer, Jonathan M.; Keller, Nancy P.; Rodrigues,
Fernando José dos Santos; Goldman, Gustavo H.; Rokas, Antonis. "Drivers of genetic diversity in secondary metabolic gene clusters
within a fungal species". (2017): http://hdl.handle.net/1822/48385.
10.1371/journal.pbio.2003583
- Wu MY; Mead ME; Kim SC; Rokas A; Yu JH. "WetA bridges cellular and chemical development in Aspergillus flavus.". (2017): http://europepmc.org/abstract/med/28658268.
- Shen XX; Zhou X; Kominek J; Kurtzman CP; Hittinger CT; Rokas A. "Reconstructing the Backbone of the Saccharomycotina Yeast
Phylogeny Using Genome-Scale Data.". (2016): http://europepmc.org/abstract/med/27672114.
10.1534/g3.116.034744
- Lind AL; Smith TD; Saterlee T; Calvo AM; Rokas A. "Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive
in Aspergillus.". (2016): http://europepmc.org/abstract/med/27694115.
10.1534/g3.116.033084
- Juan F. Ortiz; Antonis Rokas. "CTDGFinder: A Novel Homology-Based Algorithm for Identifying Closely Spaced Clusters of Tandemly
Duplicated Genes". Molecular Biology and Evolution 34 1 (2016): 215-229. https://doi.org/10.1093%2Fmolbev%2Fmsw227.
10.1093/molbev/msw227
- Zhou X; Peris D; Kominek J; Kurtzman CP; Hittinger CT; Rokas A. "in silico Whole Genome Sequencer & Analyzer (iWGS): A Computational
Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.". (2016): http://europepmc.org/abstract/med/27638685.
10.1534/g3.116.034249
- Ackerman WE; Buhimschi IA; Eidem HR; Rinker DC; Rokas A; Rood K; Zhao G; et al. "Comprehensive RNA profiling of villous trophoblast
and decidua basalis in pregnancies complicated by preterm birth following intra-amniotic infection.". (2016): http://europepmc.org/abstract/med/27452435.
10.1016/j.placenta.2016.05.010
- Wisecaver JH; Alexander WG; King SB; Hittinger CT; Rokas A. "Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins,
a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes.". (2016): http://europepmc.org/abstract/med/27189567.
10.1093/molbev/msw073
- Riley R; Haridas S; Wolfe KH; Lopes MR; Hittinger CT; Göker M; Salamov AA; et al. "Comparative genomics of biotechnologically
important yeasts.". (2016): http://europepmc.org/abstract/med/27535936.
10.1073/pnas.1603941113
- Xing-Xing Shen; Leonidas Salichos; Antonis Rokas. "A Genome-Scale Investigation of How Sequence, Function, and Tree-Based
Gene Properties Influence Phylogenetic Inference". Genome Biology and Evolution 8 8 (2016): 2565-2580. https://doi.org/10.1093%2Fgbe%2Fevw179.
10.1093/gbe/evw179
- Haley R. Eidem; David C. Rinker; William E. Ackerman; Irina A. Buhimschi; Catalin S. Buhimschi; Caitlin Dunn-Fletcher; Suhas
G. Kallapur; et al. "Comparing human and macaque placental transcriptomes to disentangle preterm birth pathology from gestational
age effects". Placenta 41 (2016): 74-82. https://doi.org/10.1016%2Fj.placenta.2016.03.006.
10.1016/j.placenta.2016.03.006
- William G. Alexander; Jennifer H. Wisecaver; Antonis Rokas; Chris Todd Hittinger. "Horizontally acquired genes in early-diverging
pathogenic fungi enable the use of host nucleosides and nucleotides". Proceedings of the National Academy of Sciences
113 15 (2016): 4116-4121. https://doi.org/10.1073/pnas.1517242113.
10.1073/pnas.1517242113
- Kassian Kobert; Leonidas Salichos; Antonis Rokas; Alexandros Stamatakis. "Computing the Internode Certainty and Related Measures
from Partial Gene Trees". Molecular Biology and Evolution 33 6 (2016): 1606-1617. https://doi.org/10.1093%2Fmolbev%2Fmsw040.
10.1093/molbev/msw040
- Kobert K; Salichos L; Rokas A; Stamatakis A. "Computing the Internode Certainty and related measures from partial gene trees.".
(2016): http://europepmc.org/abstract/med/26915959.
- William E. Ackerman; Hongwu Jing; Guomao Zhao; Antonis Rokas; Taryn Summerfield; Vicki Wysocki; Catalin S. Buhimschi; Irina
A. Buhimschi. "182: Signature placental and kidney-specific transcripts in the urinary misfoldome of women with preeclampsia
(PE)". American Journal of Obstetrics and Gynecology 214 1 (2016): S113-S114. https://doi.org/10.1016%2Fj.ajog.2015.10.219.
10.1016/j.ajog.2015.10.219
- Staehlin BM; Gibbons JG; Rokas A; O'Halloran TV; Slot JC. "Evolution of a Heavy Metal Homeostasis/Resistance Island Reflects
Increasing Copper Stress in Enterobacteria.". (2016): http://europepmc.org/abstract/med/26893455.
10.1093/gbe/evw031
- Rokas A; Soltis PS. "Editorial overview: Genomes and evolution: "Seq-ing" answers in life's genomes.". (2015): http://europepmc.org/abstract/med/26684354.
10.1016/j.gde.2015.11.005
- Kim M; Cooper BA; Venkat R; Phillips JB; Eidem HR; Hirbo J; Nutakki S; et al. "GEneSTATION 1.0: a synthetic resource of diverse
evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes.". (2015):
http://europepmc.org/abstract/med/26567549.
- Wang Y; Zhou X; Yang D; Rokas A. "A genome-scale investigation of incongruence in Culicidae mosquitoes.". (2015): http://europepmc.org/abstract/med/26608059.
- Yuyu Wang; Xiaofan Zhou; Ding Yang; Antonis Rokas. "A Genome-Scale Investigation of Incongruence in Culicidae Mosquitoes".
Genome Biology and Evolution 7 12 (2015): 3463-3471. https://doi.org/10.1093%2Fgbe%2Fevv235.
10.1093/gbe/evv235
- Hittinger CT; Rokas A; Bai FY; Boekhout T; Gonçalves P; Jeffries TW; Kominek J; et al. "Genomics and the making of yeast biodiversity.".
(2015): http://europepmc.org/abstract/med/26649756.
10.1016/j.gde.2015.10.008
- Wisecaver JH; Slot JC; Rokas A. "Correction: The Evolution of Fungal Metabolic Pathways.". (2015): http://europepmc.org/abstract/med/26378934.
10.1371/journal.pgen.1005449
- Zhou X; Rokas A; Berger SL; Liebig J; Ray A; Zwiebel LJ. "Chemoreceptor Evolution in Hymenoptera and Its Implications for
the Evolution of Eusociality.". (2015): http://europepmc.org/abstract/med/26272716.
10.1093/gbe/evv149
- Eidem HR; McGary KL; Rokas A. "Shared Selective Pressures on Fungal and Human Metabolic Pathways Lead to Divergent yet Analogous
Genetic Responses.". (2015): http://europepmc.org/abstract/med/25681382.
10.1093/molbev/msv034
- Elmore MH; McGary KL; Wisecaver JH; Slot JC; Geiser DM; Sink S; O'Donnell K; Rokas A. "Clustering of two genes putatively
involved in cyanate detoxification evolved recently and independently in multiple fungal lineages.". (2015): http://europepmc.org/abstract/med/25663439.
10.1093/gbe/evv025
- Lind AL; Wisecaver JH; Smith TD; Feng X; Calvo AM; Rokas A. "Examining the evolution of the regulatory circuit controlling
secondary metabolism and development in the fungal genus Aspergillus.". (2015): http://europepmc.org/abstract/med/25786130.
10.1371/journal.pgen.1005096
- Neafsey DE; Waterhouse RM; Abai MR; Aganezov SS; Alekseyev MA; Allen JE; Amon J; et al. "Mosquito genomics. Highly evolvable
malaria vectors: the genomes of 16 Anopheles mosquitoes.". (2015): http://europepmc.org/abstract/med/25554792.
10.1126/science.1258522
- William Ackerman; Irina Buhimschi; Haley Eidem; David Rinker; Antonis Rokas; Kara Rood; Guomao Zhao; et al. "274: Next generation
sequencing (RNA-seq) of the human decidual and placental villous transcriptomes in intra-amniotic infection (IAI) induced
preterm birth (PTB)". American Journal of Obstetrics and Gynecology 212 1 (2015): S149-S150. https://doi.org/10.1016%2Fj.ajog.2014.10.320.
10.1016/j.ajog.2014.10.320
- Wisecaver JH; Rokas A. "Fungal metabolic gene clusters-caravans traveling across genomes and environments.". (2015): http://europepmc.org/abstract/med/25784900.
10.3389/fmicb.2015.00161
- Eidem HR; Ackerman WE 4th; McGary KL; Abbot P; Rokas A. "Gestational tissue transcriptomics in term and preterm human pregnancies:
a systematic review and meta-analysis.". (2015): http://europepmc.org/abstract/med/26044726.
10.1186/s12920-015-0099-8
- Phillips JB; Abbot P; Rokas A. "Is preterm birth a human-specific syndrome?". (2015): http://europepmc.org/abstract/med/26077822.
10.1093/emph/eov010
- Hirbo J; Eidem H; Rokas A; Abbot P. "Integrating Diverse Types of Genomic Data to Identify Genes that Underlie Adverse Pregnancy
Phenotypes.". (2015): http://europepmc.org/abstract/med/26641094.
10.1371/journal.pone.0144155
- Wisecaver JH; Slot JC; Rokas A. "The evolution of fungal metabolic pathways.". (2014): http://europepmc.org/abstract/med/25474404.
10.1371/journal.pgen.1004816
- Zhou X; Rinker DC; Pitts RJ; Rokas A; Zwiebel LJ. "Divergent and conserved elements comprise the chemoreceptive repertoire
of the nonblood-feeding mosquito Toxorhynchites amboinensis.". (2014): http://europepmc.org/abstract/med/25326137.
10.1093/gbe/evu231
- Salichos L; Stamatakis A; Rokas A. "Novel information theory-based measures for quantifying incongruence among phylogenetic
trees.". (2014): http://europepmc.org/abstract/med/24509691.
10.1093/molbev/msu061
- Soria PS; McGary KL; Rokas A. "Functional divergence for every paralog.". (2014): http://europepmc.org/abstract/med/24451325.
10.1093/molbev/msu050
- Zhou X; Rokas A. "Prevention, diagnosis and treatment of high-throughput sequencing data pathologies.". (2014): http://europepmc.org/abstract/med/24471475.
10.1111/mec.12680
- Greene GH; McGary KL; Rokas A; Slot JC. "Ecology drives the distribution of specialized tyrosine metabolism modules in fungi.".
(2014): http://europepmc.org/abstract/med/24391152.
10.1093/gbe/evt208
- Polzin K; Rokas A. "Evaluating rare amino acid substitutions (RGC_CAMs) in a yeast model clade.". (2014): http://europepmc.org/abstract/med/24637883.
10.1371/journal.pone.0092213
- Rokas A. "Genetics. My oldest sister is a sea walnut?". (2013): http://europepmc.org/abstract/med/24337283.
10.1126/science.1248424
- Samuels DC; Li C; Li B; Song Z; Torstenson E; Boyd Clay H; Rokas A; et al. "Recurrent tissue-specific mtDNA mutations are
common in humans.". (2013): http://europepmc.org/abstract/med/24244193.
10.1371/journal.pgen.1003929
- McGary KL; Slot JC; Rokas A. "Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic
intermediate compounds.". (2013): http://europepmc.org/abstract/med/23798424.
10.1073/pnas.1304461110
- Predazzi IM; Rokas A; Deinard A; Schnetz-Boutaud N; Williams ND; Bush WS; Tacconelli A; et al. "Putting pleiotropy and selection
into context defines a new paradigm for interpreting genetic data.". (2013): http://europepmc.org/abstract/med/23616601.
10.1161/CIRCGENETICS.113.000126
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10.1038/nature12130
- Rinker DC; Pitts RJ; Zhou X; Suh E; Rokas A; Zwiebel LJ. "Blood meal-induced changes to antennal transcriptome profiles reveal
shifts in odor sensitivities in Anopheles gambiae.". (2013): http://europepmc.org/abstract/med/23630291.
10.1073/pnas.1302562110
- Bradshaw RE; Slot JC; Moore GG; Chettri P; de Wit PJ; Ehrlich KC; Ganley AR; et al. "Fragmentation of an aflatoxin-like gene
cluster in a forest pathogen.". (2013): http://europepmc.org/abstract/med/23448391.
10.1111/nph.12161
- Adhikary S; Cato MC; McGary KL; Rokas A; Eichman BF. "Non-productive DNA damage binding by DNA glycosylase-like protein Mag2
from Schizosaccharomyces pombe.". (2013): http://europepmc.org/abstract/med/23273506.
10.1016/j.dnarep.2012.12.001
- Rokas A. "Aspergillus.". (2013): http://europepmc.org/abstract/med/23473556.
10.1016/j.cub.2013.01.021
- Xu Y; Ma P; Shah P; Rokas A; Liu Y; Johnson CH. "Non-optimal codon usage is a mechanism to achieve circadian clock conditionality.".
(2013): http://europepmc.org/abstract/med/23417065.
10.1038/nature11942
- Ubaida Mohien C; Colquhoun DR; Mathias DK; Gibbons JG; Armistead JS; Rodriguez MC; Rodriguez MH; et al. "A bioinformatics
approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of
human malaria parasites.". (2013): http://europepmc.org/abstract/med/23082028.
10.1074/mcp.M112.019596
- Campbell MA; Staats M; van Kan JA; Rokas A; Slot JC. "Repeated loss of an anciently horizontally transferred gene cluster
in Botrytis.". (2013): http://europepmc.org/abstract/med/23921237.
10.3852/12-390
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biofilm formation by various "omics" approaches.". (2013): http://europepmc.org/abstract/med/23407341.
10.3389/fmicb.2013.00013
- Rinker DC; Zhou X; Pitts RJ; AGC Consortium; Rokas A; Zwiebel LJ. "Antennal transcriptome profiles of anopheline mosquitoes
reveal human host olfactory specialization in Anopheles gambiae.". (2013): http://europepmc.org/abstract/med/24182346.
10.1186/1471-2164-14-749
- Dhingra S; Lind AL; Lin HC; Tang Y; Rokas A; Calvo AM. "The fumagillin gene cluster, an example of hundreds of genes under
veA control in Aspergillus fumigatus.". (2013): http://europepmc.org/abstract/med/24116213.
10.1371/journal.pone.0077147
- Gibbons, John G.; Rokas, Antonis. "The function and evolution of the Aspergillus genome". Trends in Microbiology 21
1 (2013): 14-22. http://dx.doi.org/10.1016/j.tim.2012.09.005.
10.1016/j.tim.2012.09.005
- Elmore MH; Gibbons JG; Rokas A. "Assessing the genome-wide effect of promoter region tandem repeat natural variation on gene
expression.". (2012): http://europepmc.org/abstract/med/23275886.
10.1534/g3.112.004663
- Stergiopoulos I; Kourmpetis YA; Slot JC; Bakker FT; De Wit PJ; Rokas A. "In silico characterization and molecular evolutionary
analysis of a novel superfamily of fungal effector proteins.". (2012): http://europepmc.org/abstract/med/22628532.
10.1093/molbev/mss143
- Floudas D; Binder M; Riley R; Barry K; Blanchette RA; Henrissat B; Martínez AT; et al. "The Paleozoic origin of enzymatic
lignin decomposition reconstructed from 31 fungal genomes.". (2012): http://europepmc.org/abstract/med/22745431.
10.1126/science.1221748
- Wei C; Salichos L; Wittgrove CM; Rokas A; Patton JG. "Transcriptome-wide analysis of small RNA expression in early zebrafish
development.". (2012): http://europepmc.org/abstract/med/22408181.
10.1261/rna.029090.111
- Gibbons JG; Beauvais A; Beau R; McGary KL; Latgé JP; Rokas A. "Global transcriptome changes underlying colony growth in the
opportunistic human pathogen Aspergillus fumigatus.". (2012): http://europepmc.org/abstract/med/21724936.
10.1128/EC.05102-11
- Rokas, Antonis. "Transcriptome of the adult female malaria mosquito vector Anopheles albimanus". (2012):
10.1186/1471-2164-13-207
- Rokas, Antonis. "Phylogenetic and Transcriptomic Analysis of Chemosensory Receptors in a Pair of Divergent Ant Species Reveals
Sex-Specific Signatures of Odor Coding". (2012):
10.1371/journal.pgen.1002930
- Rokas, Antonis. "The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus
oryzae". (2012):
10.1016/j.cub.2012.05.033
- Rokas, Antonis. "Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic
human pathogen Aspergillus fumigatus". (2012):
10.1111/j.1365-294x.2011.05364.x
- Rokas, Antonis. "The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus". (2012):
10.1111/j.1749-6632.2012.06755.x
- Zhang, Han; Rokas, Antonis; Slot, Jason C.. "Two Different Secondary Metabolism Gene Clusters Occupied the Same Ancestral
Locus in Fungal Dermatophytes of the Arthrodermataceae". PLoS ONE 7 7 (2012): e41903-e41903. http://dx.doi.org/10.1371/journal.pone.0041903.
10.1371/journal.pone.0041903
- Campbell MA; Rokas A; Slot JC. "Horizontal transfer and death of a fungal secondary metabolic gene cluster.". (2012): http://europepmc.org/abstract/med/22294497.
10.1093/gbe/evs011
- League, Garrett P.; Slot, Jason C.; Rokas, Antonis. "The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene
transfer from Wickerhamomyces". FEMS Yeast Research 12 7 (2012): 859-863. http://dx.doi.org/10.1111/j.1567-1364.2012.00828.x.
10.1111/j.1567-1364.2012.00828.x
- Scannell DR; Zill OA; Rokas A; Payen C; Dunham MJ; Eisen MB; Rine J; Johnston M; Hittinger CT. "The Awesome Power of Yeast
Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus.". (2011): http://europepmc.org/abstract/med/22384314.
10.1534/g3.111.000273
- Kent BN; Salichos L; Gibbons JG; Rokas A; Newton IL; Clark ME; Bordenstein SR. "Complete bacteriophage transfer in a bacterial
endosymbiont (Wolbachia) determined by targeted genome capture.". (2011): http://europepmc.org/abstract/med/21292630.
10.1093/gbe/evr007
- Pitts, R; Rinker, David C; Jones, Patrick L; Rokas, Antonis; Zwiebel, Laurence J. "Transcriptome profiling of chemosensory
appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding". BMC Genomics
12 1 (2011): 271-271. http://dx.doi.org/10.1186/1471-2164-12-271.
10.1186/1471-2164-12-271
- Salichos, Leonidas; Rokas, Antonis. "Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade". PLoS ONE 6
4 (2011): e18755-e18755. http://dx.doi.org/10.1371/journal.pone.0018755.
10.1371/journal.pone.0018755
- Slot, Jason C.; Rokas, Antonis. "Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between
Fungi". Current Biology 21 2 (2011): 134-139. http://dx.doi.org/10.1016/j.cub.2010.12.020.
10.1016/j.cub.2010.12.020
- Slot JC; Rokas A. "Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi.". (2010):
http://europepmc.org/abstract/med/20479238.
10.1073/pnas.0914418107
- Hittinger CT; Johnston M; Tossberg JT; Rokas A. "Leveraging skewed transcript abundance by RNA-Seq to increase the genomic
depth of the tree of life.". (2010): http://europepmc.org/abstract/med/20080632.
10.1073/pnas.0910449107
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269-278. http://dx.doi.org/10.3852/09-073.
10.3852/09-073
- Rokas, Antonis. "Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009-30 November 2009".
(2010):
10.1111/j.1755-0998.2009.02827.x
- Rokas, Antonis. "Remarkably ancient balanced polymorphisms in a multi-locus gene network". (2010):
10.1038/nature08791
- Carnahan, Robert H.; Rokas, Antonis; Gaucher, Eric A.; Reynolds, Albert B.. "The Molecular Evolution of the p120-Catenin Subfamily
and Its Functional Associations". PLoS ONE 5 12 (2010): e15747-e15747. http://dx.doi.org/10.1371/journal.pone.0015747.
10.1371/journal.pone.0015747
- Gibbons JG; Janson EM; Hittinger CT; Johnston M; Abbot P; Rokas A. "Benchmarking next-generation transcriptome sequencing
for functional and evolutionary genomics.". (2009): http://europepmc.org/abstract/med/19706727.
10.1093/molbev/msp188
- Gibbons JG; Rokas A. "Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes.".
(2009): http://europepmc.org/abstract/med/19056904.
10.1093/molbev/msn277
- Rokas, Antonis; Abbot, Patrick. "Harnessing genomics for evolutionary insights". Trends in Ecology & Evolution 24 4
(2009): 192-200. http://dx.doi.org/10.1016/j.tree.2008.11.004.
10.1016/j.tree.2008.11.004
- Rokas, Antonis. "The effect of domestication on the fungal proteome". Trends in Genetics 25 2 (2009): 60-63. http://dx.doi.org/10.1016/j.tig.2008.11.003.
10.1016/j.tig.2008.11.003
- Mathee K; Narasimhan G; Valdes C; Qiu X; Matewish JM; Koehrsen M; Rokas A; et al. "Dynamics of Pseudomonas aeruginosa genome
evolution.". (2008): http://europepmc.org/abstract/med/18287045.
10.1073/pnas.0711982105
- King, Nicole; Westbrook, M. Jody; Young, Susan L.; Kuo, Alan; Abedin, Monika; Chapman, Jarrod; Fairclough, Stephen; et al.
"The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans". Nature 451 7180 (2008): 783-788.
http://dx.doi.org/10.1038/nature06617.
10.1038/nature06617
- Rokas, A.. "GENOMICS: Lining Up to Avoid Bias". Science 319 5862 (2008): 416-417. http://dx.doi.org/10.1126/science.1153156.
10.1126/science.1153156
- Rokas, A.; Carroll, S. B.. "Frequent and Widespread Parallel Evolution of Protein Sequences". Molecular Biology and Evolution
25 9 (2008): 1943-1953. http://dx.doi.org/10.1093/molbev/msn143.
10.1093/molbev/msn143
- Rokas, Antonis. "Differential success in northwards range expansion between ecotypes of the marble gallwasp Andricuskollari:
a tale of two lifecycles". (2008):
10.1046/j.1365-294x.2001.01211.x
- Rokas, Antonis. "The Origins of Multicellularity and the Early History of the Genetic Toolkit For Animal Development". Annual
Review of Genetics 42 1 (2008): 235-251. http://dx.doi.org/10.1146/annurev.genet.42.110807.091513.
10.1146/annurev.genet.42.110807.091513
- Rokas, Antonis. "The molecular origins of multicellular transitions". Current Opinion in Genetics & Development 18
6 (2008): 472-478. http://dx.doi.org/10.1016/j.gde.2008.09.004.
10.1016/j.gde.2008.09.004
- Ané C; Larget B; Baum DA; Smith SD; Rokas A. "Bayesian estimation of concordance among gene trees.". (2007): http://europepmc.org/abstract/med/17095535.
10.1093/molbev/msl170
- Rokas, Antonis. "Transcriptional Rewiring: The Proof Is in the Eating". (2007):
10.1016/j.cub.2007.06.025
- Rokas A; Payne G; Fedorova ND; Baker SE; Machida M; Yu J; Georgianna DR; et al. "What can comparative genomics tell us about
species concepts in the genus Aspergillus?". (2007): http://europepmc.org/abstract/med/18490942.
10.3114/sim.2007.59.02
- CHALLIS, RICHARD J.; MUTUN, SERAP; NIEVES-ALDREY, JOSE-LUIS; PREUSS, SONJA; ROKAS, ANTONIS; AEBI, ALEXANDRE; SADEGHI, EBRAHIM;
TAVAKOLI, MAJID; STONE, GRAHAM N.. "Longitudinal range expansion and cryptic eastern species in the western Palaearctic oak
gallwasp, Andricus coriarius". Molecular Ecology 16 10 (2007): 2103-2114. http://dx.doi.org/10.1111/j.1365-294X.2006.03210.x.
10.1111/j.1365-294x.2006.03210.x
- Rokas, Antonis. "The phylogeographical clade trade: tracing the impact of human-mediated dispersal on the colonization of
northern Europe by the oak gallwasp Andricus kollari". (2007):
10.1111/j.1365-294x.2007.03348.x
- Rokas, Antonis. "Evidence for widespread cryptic sexual generations in apparently purely asexual Andricus gallwasps". (2007):
10.1111/j.1365-294x.2007.03573.x
- Rokas, Antonis; Carroll, Sean B.. "Bushes in the Tree of Life". PLoS Biology 4 11 (2006): e352-e352. http://dx.doi.org/10.1371/journal.pbio.0040352.
10.1371/journal.pbio.0040352
- Rokas, Antonis. "Evolution: Different paths to the same end". Nature 443 7110 (2006): 401-402. http://dx.doi.org/10.1038/443401a.
10.1038/443401a
- Rokas, A.. "GENOMICS: Genomics and the Tree of Life". Science 313 5795 (2006): 1897-1899. http://dx.doi.org/10.1126/science.1134490.
10.1126/science.1134490
- Jeong, Sangyun; Rokas, Antonis; Carroll, Sean B.. "Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its
Gain and Loss in Drosophila Evolution". Cell 125 7 (2006): 1387-1399. http://dx.doi.org/10.1016/j.cell.2006.04.043.
10.1016/j.cell.2006.04.043
- Prudhomme, Benjamin; Gompel, Nicolas; Rokas, Antonis; Kassner, Victoria A.; Williams, Thomas M.; Yeh, Shu-Dan; True, John
R.; Carroll, Sean B.. "Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene". Nature
440 7087 (2006): 1050-1053. http://dx.doi.org/10.1038/nature04597.
10.1038/nature04597
- Rokas A; Carroll SB. "More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy.".
(2005): http://europepmc.org/abstract/med/15746014.
10.1093/molbev/msi121
- Rokas, A.. "Animal Evolution and the Molecular Signature of Radiations Compressed in Time". Science 310 5756 (2005):
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10.1126/science.1116759
- Hittinger CT; Rokas A; Carroll SB. "Parallel inactivation of multiple GAL pathway genes and ecological diversification in
yeasts.". (2004): http://europepmc.org/abstract/med/15381776.
10.1073/pnas.0404319101
- Rokas, Antonis. "What determines the direction of evolutionary change?". Trends in Ecology & Evolution 19 6 (2004):
287-288. http://dx.doi.org/10.1016/j.tree.2004.03.019.
10.1016/j.tree.2004.03.019
- Michael P. Cummings; Scott A. Handley; Daniel S. Myers; David L. Reed; Antonis Rokas; Katarina Winka. "Comparing Bootstrap
and Posterior Probability Values in the Four-Taxon Case". Systematic Biology 52 4 (2003): 477-487. https://doi.org/10.1080%2F10635150390218213.
10.1080/10635150390218213
- Michael P. Cummings; Scott A. Handley; Daniel S. Myers; David L. Reed; Antonis Rokas; Katarina Winka. "Comparing Bootstrap
and Posterior Probability Values in the Four-Taxon Case". Systematic Biology 52 4 (2003): 477-487. https://doi.org/10.1080%2F10635150309311.
10.1080/10635150309311
- Cummings MP; Handley SA; Myers DS; Reed DL; Rokas A; Winka K. "Comparing bootstrap and posterior probability values in the
four-taxon case.". (2003): http://europepmc.org/abstract/med/12857639.
- Rokas, Antonis; Ladoukakis, Emmanuel; Zouros, Eleftherios. "Animal mitochondrial DNA recombination revisited". Trends in
Ecology & Evolution 18 8 (2003): 411-417. http://dx.doi.org/10.1016/S0169-5347(03)00125-3.
10.1016/s0169-5347(03)00125-3
- Rokas, Antonis; King, Nicole; Finnerty, John; Carroll, Sean B.. "Conflicting phylogenetic signals at the base of the metazoan
tree". Evolution and Development 5 4 (2003): 346-359. http://dx.doi.org/10.1046/j.1525-142X.2003.03042.x.
10.1046/j.1525-142x.2003.03042.x
- Rokas, Antonis; Melika, George; Abe, Yoshihisa; Nieves-Aldrey, Jose-Luis; Cook, James M; Stone, Graham N. "Lifecycle closure,
lineage sorting, and hybridization revealed in a phylogenetic analysis of European oak gallwasps (Hymenoptera: Cynipidae:
Cynipini) using mitochondrial sequence data". Molecular Phylogenetics and Evolution 26 1 (2003): 36-45. http://dx.doi.org/10.1016/S1055-7903(02)00329-9.
10.1016/s1055-7903(02)00329-9
- Rokas, Antonis; Atkinson, Rachel J.; Webster, Lucy; Csoka, Gyorgy; Stone, Graham N.. "Out of Anatolia: longitudinal gradients
in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae". Molecular
Ecology 12 8 (2003): 2153-2174. http://dx.doi.org/10.1046/j.1365-294X.2003.01894.x.
10.1046/j.1365-294x.2003.01894.x
- Rokas, Antonis; Williams, Barry L.; King, Nicole; Carroll, Sean B.. "Genome-scale approaches to resolving incongruence in
molecular phylogenies". Nature 425 6960 (2003): 798-804. http://dx.doi.org/10.1038/nature02053.
10.1038/nature02053
- Rokas A; Atkinson RJ; Nieves-Aldrey JL; West SA; Stone GN. "The incidence and diversity of Wolbachia in gallwasps (Hymenoptera;
Cynipidae) on oak.". (2002): http://europepmc.org/abstract/med/12207731.
10.1046/j.1365-294X.2002.01556.x
- Rokas A; Nylander JA; Ronquist F; Stone GN. "A maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera:
Cynipidae): implications for insect phylogenetic studies.". (2002): http://europepmc.org/abstract/med/11820842.
10.1006/mpev.2001.1032
- Rokas, Antonis. "Sexual selection driving spider diversification". Trends in Ecology & Evolution 17 7 (2002): 304-304.
http://dx.doi.org/10.1016/S0169-5347(02)02532-6.
10.1016/s0169-5347(02)02532-6
- Cook, James M.; Rokas, Antonis; Pagel, Mark; Stone, Graham N.. "EVOLUTIONARY SHIFTS BETWEEN HOST OAK SECTIONS AND HOST-PLANT
ORGANS IN ANDRICUS GALLWASPS". Evolution 56 9 (2002): 1821-1830. http://dx.doi.org/10.1111/j.0014-3820.2002.tb00196.x.
10.1111/j.0014-3820.2002.tb00196.x
- Rokas, Antonis. "What is a character?". Trends in Ecology & Evolution 16 10 (2001): 590-590. http://dx.doi.org/10.1016/S0169-5347(01)02301-1.
10.1016/s0169-5347(01)02301-1
- Rokas, Antonis. "Evolutionary biology meets genomics". Trends in Ecology & Evolution 16 1 (2001): 15-16. http://dx.doi.org/10.1016/S0169-5347(00)02051-6.
10.1016/s0169-5347(00)02051-6
- Rokas, A. "Selfish element wars in a wasp battleground". Trends in Ecology & Evolution 16 6 (2001): 277-277. http://dx.doi.org/10.1016/S0169-5347(01)02164-4.
10.1016/s0169-5347(01)02164-4
- Rokas, Antonis. "Molecular Evolution and Phylogenetics. By M. Nei and S. Kumar. Oxford University Press. 2000. ISBN: 0-19-513584-9
(hbk); 0-19-513585-7 (pbk). xiv+333 pages. Price: £65 (hbk); £32.50 (pbk).". (2001):
10.1017/s0016672301219405
- Rokas, Antonis; Atkinson, Rachel J; Brown, Gordon S; West, Stuart A; Stone, Graham N. "Understanding patterns of genetic diversity
in the oak gallwasp Biorhiza pallida: demographic history or a Wolbachia selective sweep?". Heredity 87 3 (2001): 294-304.
http://dx.doi.org/10.1046/j.1365-2540.2001.00872.x.
10.1046/j.1365-2540.2001.00872.x
- Rokas, Antonis. "Getting it right for the wrong reason". Trends in Ecology & Evolution 16 12 (2001): 668-668. http://dx.doi.org/10.1016/S0169-5347(01)02376-X.
10.1016/s0169-5347(01)02376-x
- Cook JM; Rokas A. "Influential passengers come of age. 1st International Wolbachia Conference, Orthodox Academy, Kolymbari,
Crete, Greece, 7-12 June 2000.". (2000): http://europepmc.org/abstract/med/11041802.
10.1016/S0168-9525(00)02085-0
- Averof M; Rokas A; Wolfe KH; Sharp PM. "Evidence for a high frequency of simultaneous double-nucleotide substitutions.". (2000):
http://europepmc.org/abstract/med/10678838.
10.1126/science.287.5456.1283
- Rokas, Antonis. "Wolbachia as a speciation agent". Trends in Ecology & Evolution 15 2 (2000): 44-45. http://dx.doi.org/10.1016/S0169-5347(99)01783-8.
10.1016/s0169-5347(99)01783-8
- Rokas, Antonis; Holland, Peter W.H.. "Rare genomic changes as a tool for phylogenetics". Trends in Ecology & Evolution
15 11 (2000): 454-459. http://dx.doi.org/10.1016/S0169-5347(00)01967-4.
10.1016/s0169-5347(00)01967-4
- Rokas, Antonis; McVean, Gilean. "A Bayesian guide to tree felling". Trends in Ecology & Evolution 15 10 (2000): 396-396.
http://dx.doi.org/10.1016/S0169-5347(00)01980-7.
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