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Antton Alberdi. Published 26 articles in journals. Works in the area(s) of Natural sciences with emphasis on Biological Sciences with emphasis on Biodiversity Conservation, Natural sciences with emphasis on Biological Sciences with emphasis on Ecology, Natural sciences with emphasis on Biological Sciences with emphasis on Genetics and Heredity, Natural sciences with emphasis on Biological Sciences with emphasis on Microbiology and Natural sciences with emphasis on Biological Sciences with emphasis on Behavioural Sciences Biology. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: biodiversity assessment; environmental DNA; faecal samples; high throughput sequencing; metabarcoding primers; molecular diet analyses; operational taxonomic unit; PCR replicates; primer bias; taxonomic assignment; .
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Identification

Personal identification

Full name
Antton Alberdi

Citation names

  • Alberdi, Antton

Author identifiers

Ciência ID
FA11-115E-C04D
ORCID iD
0000-0002-2875-6446

Telephones

Mobile phone
  • (+45) 53840119 (Personal)

Knowledge fields

  • Natural sciences - Biological Sciences - Biodiversity Conservation
  • Natural sciences - Biological Sciences - Ecology
  • Natural sciences - Biological Sciences - Genetics and Heredity
  • Natural sciences - Biological Sciences - Microbiology
  • Natural sciences - Biological Sciences - Behavioural Sciences Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Basque (Mother tongue)
Spanish; Castilian (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
2011/09/01 - 2014/12/05
Concluded
 Biodiversity and Ecosystem Functioning and Management (Doutoramento)
Universidad del País Vasco, Spain
"Ecology, biogeography and evolutionary history of the alpine long-eared bat Plecotus macrobullaris" (THESIS/DISSERTATION)
 Excellent Cum Lude
2010/09/01 - 2011/06/01
Concluded
 Biodiversity and Ecosystem Functioning and Management (Master Universitario)
Universidad del País Vasco, Spain
 9.3/10
2005/09/01 - 2010/06/01
Concluded
 Biology (Bachelor)
Universidad del País Vasco, Spain
 8.9/10
Affiliation

Science

Category
Host institution 		Employer
2020/01/01 - Current Principal Investigator (Research) Københavns Universitet, Denmark
University of Copenhagen Globe Institute, Denmark
Projects

Grant

Designation Funders
2020/01/01 - 2026/12/31 Centre for Evolutionary Hologenomics
-
Principal investigator
2021/09/01 - 2025/08/31 3D'omics
101000309
Principal investigator
2021/07/01 - 2024/06/30 Earth Hologenomics
CF20-0460
Principal investigator
2019/01/01 - 2022/12/31 HoloFood: Holistic solution to improve animal food production through deconstructing the biomolecular interactions between feed, gut microorganisms and animals in relation to performance parameters
817729
Principal investigator
2018/01/01 - 2019/12/31 Was animal domestication driven by gut microbiome humanisation?
-
Other
Concluded
2016/01/01 - 2017/12/31 Do microbiomes drive ecological adaptation in vertebrates? Answers from the metagenomic analysis of ancient DNA from guano deposits
5051-00033
Post-doc Fellow
Outputs

Publications

Journal article
  1. "Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish". PeerJ 10 (2022): e12992-e12992. http://dx.doi.org/10.7717/peerj.12992.
    10.7717/peerj.12992
  2. "The role of the gut microbiota in the dietary niche expansion of fishing bats". Animal Microbiome 3 1 (2021): http://dx.doi.org/10.1186/s42523-021-00137-w.
    10.1186/s42523-021-00137-w
  3. "Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-02015-6.
    10.1038/s41598-021-02015-6
  4. "Disentangling host–microbiota complexity through hologenomics". Nature Reviews Genetics (2021): http://dx.doi.org/10.1038/s41576-021-00421-0.
    10.1038/s41576-021-00421-0
  5. "Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence". Diversity and Distributions 27 9 (2021): 1606-1618. http://dx.doi.org/10.1111/ddi.13375.
    10.1111/ddi.13375
  6. "The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs". iScience 24 8 (2021): 102816-102816. http://dx.doi.org/10.1016/j.isci.2021.102816.
    10.1016/j.isci.2021.102816
  7. "Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research". iScience 23 8 (2020): 101414-101414. http://dx.doi.org/10.1016/j.isci.2020.101414.
    10.1016/j.isci.2020.101414
  8. "Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.01311.
    10.3389/fmicb.2020.01311
  9. Alberdi, Antton. "The long-term restoration of ecosystem complexity". Nature Ecology & Evolution (2020): http://dx.doi.org/10.1038/s41559-020-1154-1.
    10.1038/s41559-020-1154-1
  10. Alberdi, Antton. "DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats". Nature Communications (2020): http://dx.doi.org/10.1038/s41467-020-14961-2.
    10.1038/s41467-020-14961-2
  11. Alberdi, Antton. "Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections". Proceedings of the National Academy of Sciences (2019): http://dx.doi.org/10.1073/pnas.1820663116.
    10.1073/pnas.1820663116
  12. Alberdi, Antton. "A guide to the application of Hill numbers to DNA-based diversity analyses". Molecular Ecology Resources (2019): http://dx.doi.org/10.1111/1755-0998.13014.
    10.1111/1755-0998.13014
  13. Alberdi, Antton. "Promises and pitfalls of using high-throughput sequencing for diet analysis". Molecular Ecology Resources (2019): http://dx.doi.org/10.1111/1755-0998.12960.
    10.1111/1755-0998.12960
  14. Alberdi, Antton. "Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin". Molecular Ecology (2019): http://dx.doi.org/10.1111/mec.14860.
    10.1111/mec.14860
  15. Alberdi, Antton. "Ecology and evolutionary biology of fishing bats". Mammal Review (2018): http://dx.doi.org/10.1111/mam.12136.
    10.1111/mam.12136
  16. Alberdi, Antton. "Applied Hologenomics: Feasibility and Potential in Aquaculture". Trends in Biotechnology (2018): http://dx.doi.org/10.1016/j.tibtech.2017.12.006.
    10.1016/j.tibtech.2017.12.006
  17. Alberdi, Antton. "An integrated framework to identify wildlife populations under threat from climate change". Molecular Ecology Resources (2018): https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12694.
    10.1111/1755-0998.12694
  18. Alberdi, Antton. "Scrutinizing key steps for reliable metabarcoding of environmental samples". Methods in Ecology and Evolution 9 1 (2017): 134-147. https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.12849.
    10.1111/2041-210X.12849
  19. Gloriana Chaverri; Inazio Garin; Antton Alberdi; Lide Jimenez; Cristian Castillo-Salazar; Joxerra Aihartza; Danilo Russo. "Unveiling the Hidden Bat Diversity of a Neotropical Montane Forest". PLOS ONE 11 10 (2016): e0162712-e0162712. https://doi.org/10.1371%2Fjournal.pone.0162712.
    10.1371/journal.pone.0162712
  20. Antton Alberdi; Ostaizka Aizpurua; Kristine Bohmann; Marie Lisandra Zepeda-Mendoza; M. Thomas P. Gilbert. "Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?". Trends in Ecology & Evolution 31 9 (2016): 689-699. https://doi.org/10.1016%2Fj.tree.2016.06.008.
    10.1016/j.tree.2016.06.008
  21. M. Hervella; E. M. Svensson; A. Alberdi; T. Günther; N. Izagirre; A. R. Munters; S. Alonso; et al. "The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa". Scientific Reports 6 1 (2016): https://doi.org/10.1038%2Fsrep25501.
    10.1038/srep25501
  22. Ostaizka Aizpurua; Antton Alberdi; Joxerra Aihartza; Inazio Garin; Brock Fenton. "Fishing Technique of Long-Fingered Bats Was Developed from a Primary Reaction to Disappearing Target Stimuli". PLOS ONE 11 12 (2016): e0167164-e0167164. https://doi.org/10.1371%2Fjournal.pone.0167164.
    10.1371/journal.pone.0167164
  23. Antton Alberdi; Ostaizka Aizpurua; Joxerra Aihartza; Inazio Garin. "Ecology, biogeography and evolutionary history of the alpine long-eared bat Plecotus macrobullaris". Galemys, Spanish Journal of Mammalogy 28 (2016): 1-14. https://doi.org/10.7325%2Fgalemys.2016.a1.
    10.7325/galemys.2016.a1
  24. Antton Alberdi; M. Thomas P. Gilbert; Orly Razgour; Ostaizka Aizpurua; Joxerra Aihartza; Inazio Garin; John Stewart. "Contrasting population-level responses to Pleistocene climatic oscillations in an alpine bat revealed by complete mitochondrial genomes and evolutionary history inference". J. Biogeogr. (2015): n/a-n/a. http://dx.doi.org/10.1111/jbi.12535.
    10.1111/jbi.12535
  25. Arrizabalaga-Escudero, A.; Garin, I.; García-Mudarra, J.L.; Alberdi, A.; Aihartza, J.; Goiti, U.. "Trophic requirements beyond foraging habitats: The importance of prey source habitats in bat conservation". Biological Conservation 191 (2015): 512-519. http://www.scopus.com/inward/record.url?eid=2-s2.0-84939554235&partnerID=MN8TOARS.
    10.1016/j.biocon.2015.07.043
  26. Aizpurua, O.; Alberdi, A.; Aihartza, J.; Garin, I.. "Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence". Scientific Reports 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84937702134&partnerID=MN8TOARS.
    10.1038/srep12392
  27. Alberdi, A.; Aihartza, J.; Aizpurua, O.; Salsamendi, E.; Brigham, R.M.; Garin, I.. "Living above the treeline: roosting ecology of the alpine bat Plecotus macrobullaris". European Journal of Wildlife Research 61 1 (2015): 17-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-84925513595&partnerID=MN8TOARS.
    10.1007/s10344-014-0862-8
  28. Antton Alberdi; Ostaizka Aizpurua; Joxerra Aihartza; Inazio Garin. "Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris". Front Zool 11 1 (2014): http://dx.doi.org/10.1186/s12983-014-0077-6.
    10.1186/s12983-014-0077-6
  29. Aizpurua, O.; Aihartza, J.; Alberdi, A.; Baagøe, H.J.; Garin, I.. "Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey". Journal of Experimental Biology 217 18 (2014): 3318-3325. http://www.scopus.com/inward/record.url?eid=2-s2.0-84924872191&partnerID=MN8TOARS.
    10.1242/jeb.104992
  30. Arrizabalaga-Escudero, Aitor; Napal, Maria; Aihartza, Joxerra; Garin, Inazio; Alberdi, Antton; Salsamendi, Egoitz. "Can pinewoods provide habitat for a deciduous forest specialist? A two-scale approach to the habitat selection of Bechstein's bat". Mammalian Biology - Zeitschrift für Säugetierkunde (2013): http://dx.doi.org/10.1016/j.mambio.2013.09.005.
    10.1016/j.mambio.2013.09.005
  31. Alberdi, Antton; Garin, Inazio; Aizpurua, Ostaizka; Aihartza, Joxerra. "Review on the Geographic and Elevational Distribution of the Mountain Long-Eared Bat Plecotus Macrobullaris, Completed by Utilising a Specific Mist-Netting Technique". Acta Chiropterologica 15 2 (2013): 451â¿¿461-451â¿¿461. http://dx.doi.org/10.3161/150811013x679071.
    10.3161/150811013x679071
  32. Aizpurua, Ostaizka; Garin, Inazio; Alberdi, Antton; Salsamendi, Egoitz; Baagøe, Hans; Aihartza, Joxerra. "Fishing Long-Fingered Bats (Myotis capaccinii) Prey Regularly upon Exotic Fish". PLoS ONE 8 11 (2013): e80163-e80163. http://dx.doi.org/10.1371/journal.pone.0080163.
    10.1371/journal.pone.0080163
  33. Alberdi, A.; Garin, I.; Aizpurua, O.; Aihartza, J.. "Review on the geographic and elevational distribution of the mountain long-eared bat plecotus macrobullaris, completed by utilising a specific mist-netting technique". Acta Chiropterologica 15 2 (2013): 451-461. http://www.scopus.com/inward/record.url?eid=2-s2.0-84894078791&partnerID=MN8TOARS.
    10.3161/150811013X679071
  34. Alberdi, Antton; Garin, Inazio; Aizpurua, Ostaizka; Aihartza, Joxerra. "The Foraging Ecology of the Mountain Long-Eared Bat Plecotus macrobullaris Revealed with DNA Mini-Barcodes". PLoS ONE 7 4 (2012): e35692-e35692. http://dx.doi.org/10.1371/journal.pone.0035692.
    10.1371/journal.pone.0035692
  35. Alberdi, A.; Aihartza, J.; Albero, J.C.; Aizpurua, O.; López-Baucells, A.; Freixas, L.; Puig, X.; Flaquer, C.; Garin, I.. "First records of the parti-coloured bat Vespertilio murinus (Chiroptera: Vespertilionidae) in the Pyrenees". Mammalia 76 1 (2012): 109-111. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859757851&partnerID=MN8TOARS.
    10.1515/MAMM.2011.106
Distinctions

Award

2016 CAF-Elhuyar award to the best science outreach article
Elhuyar Fundazioa, Spain