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Identificação

Identificação pessoal

Nome completo
Tom Yankeelov

Identificadores de autor

Ciência ID
7114-FEB9-5615
ORCID iD
0000-0001-6201-3913
Formação
Grau Classificação
2003
Concluído
 Ph.D. Biomedical Engineering (Doctor of Philosophy)
State University of New York, Estados Unidos
2000
Concluído
 M.S. Physics (Master)
Indiana University System, Estados Unidos
1998
Concluído
 M.A. Applied Mathematics (Master)
Indiana University System, Estados Unidos
1996
Concluído
 B.A. Mathematics (Bachelor)
University of Louisville, Estados Unidos
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento 		Empregador
2003/05 - 2005/06 Investigador (Investigação) Vanderbilt University, Estados Unidos
2003 - 2005 Pós-doutorado (Investigação) Vanderbilt University, Estados Unidos
2000/09 - 2003/05 Assistente de Investigação (carreira) (Investigação) State University of New York, Estados Unidos
2000/06 - 2000/08 Investigador Auxiliar Convidado (carreira) (Investigação) Brookhaven National Laboratory, Estados Unidos

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento 		Empregador
2016/01 - Atual Professor Catedrático (Docente Universitário) The University of Texas at Austin, Estados Unidos
2014/01 - 2015/12 Professor Catedrático (Docente Universitário) Vanderbilt University, Estados Unidos
2010/01 - 2013/12 Professor Associado (Docente Universitário) Vanderbilt University, Estados Unidos
2005/07 - 2009/12 Professor Auxiliar (Docente Universitário) Vanderbilt University, Estados Unidos
1996/08 - 2000/05 Assistente (Docente Universitário) Indiana University System, Estados Unidos
Projetos

Bolsa

Designação Financiadores
2019/09/19 - 2024/08/31 Integrating Omics and Quantitative Imaging Data in Co-Clinical Trials to Predict Treatment Response in Triple Negative Breast Cancer
1U24 CA226110
Investigador responsável
The University of Texas at Austin, Estados Unidos

Baylor College of Medicine, Estados Unidos

Stanford University, Estados Unidos
National Cancer Institute
Em curso
2020/04/01 - 2024/03/31 Personalizing immunotherapy in HER2 breast cancer through quantitative imaging
1R01CA240589
Investigador responsável
The University of Texas at Austin, Estados Unidos

The University of Alabama at Birmingham, Estados Unidos
National Cancer Institute
Em curso
2019/09/09 - 2023/12/31 First in Human Study of Rhenium Nanoliposomes (RNL186) in Recurrent Glioma
1R01 CA235800
Investigador responsável
The University of Texas at Austin, Estados Unidos

The University of Texas at San Antonio, Estados Unidos
National Cancer Institute
Em curso
2019/08/01 - 2021/06/30 Disposable Perfusion Phantom for Accurate DCE-MRI Measurement of Pancreatic Cancer Therapy Response
UG3/UH3
Investigador responsável
The University of Texas at Austin, Estados Unidos

The University of Alabama at Birmingham, Estados Unidos

Vanderbilt University, Estados Unidos
National Cancer Institute
Em curso
2015/12/01 - 2020/11/30 Predictive Oncology through Advanced in vivo Imaging
RR160005
Investigador responsável
The University of Texas at Austin, Estados Unidos
 Cancer Prevention and Research Institute of Texas
Em curso
2017/09/01 - 2020/08/31 Quantitative MRI for Predicting Response of Breast Cancer to Neoadjuvant Therapy
5U01 CA142565
Investigador responsável
The University of Texas at Austin, Estados Unidos

The University of Chicago, Estados Unidos
National Cancer Institute
Em curso
2016/01/01 - 2020/07/31 Quantitative Multiscale Imaging to Optimize Cancer Treatment Strategies
1R01 CA186193
Investigador responsável
The University of Texas at Austin, Estados Unidos

Vanderbilt University, Estados Unidos
National Cancer Institute
Em curso
2013/06/01 - 2020/02/29 Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast Cancer
1U01 CA174706
Investigador responsável
The University of Texas at Austin, Estados Unidos

Vanderbilt University, Estados Unidos
National Cancer Institute
Concluído
Produções

Publicações

Artigo em conferência
  1. Woodall, R.T.; Hormuth, D.A.; Abdelmalik, M.R.A.; Wu, C.; Feng, X.; Phillips, W.T.; Bao, A.; et al. "Integrating quantitative imaging and computational modeling to predict the spatiotemporal distribution of 186Re nanoliposomes for recurrent glioblastoma treatment". 2019.
    10.1117/12.2512867
  2. DeGrandchamp, J.B.; Whisenant, J.G.; Arlinghaus, L.R.; Abramson, V.G.; Yankeelov, T.E.; Cárdenas-Rodríguez, J.. "Predicting response before initiation of neoadjuvant chemotherapy in breast cancer using new methods for the analysis of dynamic contrast enhanced MRI (DCE MRI) data". 2016.
    10.1117/12.2217008
  3. Flint, K.M.; Weis, J.A.; Yankeelov, T.E.; Miga, M.I.. "Voxel-level reproducibility assessment of modality independent elastography in a pre-clinical murine model". 2015.
    10.1117/12.2082230
  4. Weis, J.A.; Johnsen, A.M.; Wile, G.E.; Yankeelov, T.E.; Abramson, R.G.; Miga, M.I.. "Development of a diaphragmatic motion-based elastography framework for assessment of liver stiffness". 2015.
    10.1117/12.2081257
  5. Conley, R.H.; Meszoely, I.M.; Pheiffer, T.S.; Weis, J.A.; Yankeelov, T.E.; Miga, M.I.. "Image to physical space registration of supine breast MRI for image guided breast surgery". 2014.
    10.1117/12.2043817
  6. Kim, D.K.; Weis, J.A.; Yankeelov, T.E.; Miga, M.I.. "Utilizing a reference material for assessing absolute tumor mechanical properties in modality independent elastography". 2014.
    10.1117/12.2044195
  7. Barnes, S.L.; Whisenant, J.G.; Li, X.; Yankeelov, T.E.. "Techniques and applications of dynamic contrast enhanced magnetic resonance imaging in cancer". 2014.
    10.1109/EMBC.2014.6944566
  8. Weis, J.A.; Kim, D.K.; Yankeelov, T.E.; Miga, M.I.. "Validation and reproducibility assessment of modality independent elastography in a pre-clinical model of breast cancer". 2014.
    10.1117/12.2042796
  9. Weis, J.A.; Miga, M.I.; Li, X.; Arlinghaus, L.R.; Chakravarthy, A.B.; Abramson, V.; Abramson, R.G.; Farley, J.; Yankeelov, T.E.. "A mechanically coupled reaction diffusion model of breast tumor response during neoadjuvant chemotherapy". 2013.
    10.1117/12.2007961
  10. Hormuth, D.A.; Yankeelov, T.E.. "In vivo imaging to initialize a biophysical model of tumor growth: Preliminary results". 2013.
    10.1109/BSEC.2013.6618487
  11. Weisa, J.A.; Yankeelov, T.E.; Munoz, S.A.; Sastry, R.A.; Barnes, S.L.; Arlinghaus, L.R.; Li, X.; Miga, M.I.. "A consistent pre-clinical/clinical elastography approach for assessing tumor mechanical properties in therapeutic systems". 2013.
    10.1117/12.2007425
  12. Smith, D.S.; Arlinghaus, L.R.; Yankeelov, T.E.; Welch, E.B.. "Curvelets as a sparse basis for compressed sensing magnetic resonance imaging". 2013.
    10.1117/12.2007032
  13. Yankeelov, T.E.; Atuegwu, N.C.; Gore, J.C.. "Computational modeling in quantitative cancer imaging". 2009.
    10.1109/BSEC.2009.5090456
  14. Li, X.; Dawant, B.M.; Welch, E.B.; Chakravarthy, A.B.; Freehardt, D.; Mayer, I.; Kelley, M.; et al. "Nonrigid registration algorithm for longitudinal breast MR images and the preliminary analysis of breast tumor response". 2009.
    10.1117/12.811216
  15. Li, X.; Yankeelov, T.E.; Peterson, T.E.; Gore, J.C.; Dawanf, B.M.. "Constrained non-rigid registration for whole body image registration: Method and validation". 2007.
    10.1117/12.709026
  16. Li, X.; Yankeelov, T.E.; Rosen, G.; Gore, J.C.; Dawant, B.M.. "Multi-modal inter-subject registration of mouse brain images". 2006.
    10.1117/12.652407
Artigo em revista
  1. Chen, Y.-I.; Chang, Y.-J.; Liao, S.-C.; Nguyen, T.D.; Yang, J.; Kuo, Y.-A.; Hong, S.; et al. "Generative adversarial network enables rapid and robust fluorescence lifetime image analysis in live cells". Communications Biology 5 1 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85122790808&partnerID=MN8TOARS.
    10.1038/s42003-021-02938-w
  2. Yang, J.; Davis, T.; Kazerouni, A.S.; Chen, Y.-I.; Bloom, M.J.; Yeh, H.-C.; Yankeelov, T.E.; Virostko, J.. "Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells". Molecular Imaging and Biology 24 1 (2022): 144-155. http://www.scopus.com/inward/record.url?eid=2-s2.0-85116433059&partnerID=MN8TOARS.
    10.1007/s11307-021-01639-4
  3. Yang, J.; Davis, T.; Kazerouni, A.S.; Chen, Y.-I.; Bloom, M.J.; Yeh, H.-C.; Yankeelov, T.E.; Virostko, J.. "Correction to: Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells (Molecular Imaging and Biology, (2022), 24, 1, (144-155), 10.1007/s11307-021-01639-4)". Molecular Imaging and Biology 24 1 (2022): 156-156. http://www.scopus.com/inward/record.url?eid=2-s2.0-85118444161&partnerID=MN8TOARS.
    10.1007/s11307-021-01676-z
  4. Liu, J.; Hormuth, D.A.; Yang, J.; Yankeelov, T.E.. "A Multi-Compartment Model of Glioma Response to Fractionated Radiation Therapy Parameterized via Time-Resolved Microscopy Data". Frontiers in Oncology 12 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85124964385&partnerID=MN8TOARS.
    10.3389/fonc.2022.811415
  5. Surov, A.; Kim, J.Y.; Aiello, M.; Huang, W.; Yankeelov, T.E.; Wienke, A.; Pech, M.. "Associations between Dynamic Contrast Enhanced Magnetic Resonance Imaging and Clinically Relevant Histopathological Features in Breast Cancer: A Multicenter Analysis". In Vivo 36 1 (2022): 398-408. http://www.scopus.com/inward/record.url?eid=2-s2.0-85123037706&partnerID=MN8TOARS.
    10.21873/INVIVO.12717
  6. Holland, M.D.; Morales, A.; Simmons, S.; Smith, B.; Misko, S.R.; Jiang, X.; Hormuth, D.A.; et al. "Disposable point-of-care portable perfusion phantom for quantitative DCE-MRI". Medical Physics 49 1 (2022): 271-281. http://www.scopus.com/inward/record.url?eid=2-s2.0-85120849172&partnerID=MN8TOARS.
    10.1002/mp.15372
  7. Kalina Slavkova; Julie DiCarlo; Anum Syed Kazerouni; John Virostko; Anna Sorace; Debra Patt; Boone Goodgame; Thomas Yankeelov. "Characterizing Errors in Pharmacokinetic Parameters from Analyzing Quantitative Abbreviated DCE-MRI Data in Breast Cancer". Tomography (2021): https://www.mdpi.com/2379-139X/7/3/23.
    10.3390/tomography7030023
  8. Virostko, John; Kuketz, Garrett; Higgins, Erin; Wu, Chengyue; Sorace, Anna G.; DiCarlo, Julie C.; Avery, Sarah; et al. "The rate of breast fibroglandular enhancement during dynamic contrast-enhanced MRI reflects response to neoadjuvant therapy". European Journal of Radiology 136 (2021): 109534. http://dx.doi.org/10.1016/j.ejrad.2021.109534.
    10.1016/j.ejrad.2021.109534
  9. Hormuth, David A.; Jarrett, Angela M.; Lorenzo, Guillermo; Lima, Ernesto A. B. F.; Wu, Chengyue; Chung, Caroline; Patt, Debra; Yankeelov, Thomas E.. "Math, magnets, and medicine: enabling personalized oncology". Expert Review of Precision Medicine and Drug Development (2021): 1-3. http://dx.doi.org/10.1080/23808993.2021.1878023.
    10.1080/23808993.2021.1878023
  10. Viguerie, Alex; Lorenzo, Guillermo; Auricchio, Ferdinando; Baroli, Davide; Hughes, Thomas J.R.; Patton, Alessia; Reali, Alessandro; Yankeelov, Thomas E.; Veneziani, Alessandro. "Simulating the spread of COVID-19 via a spatially-resolved susceptible–exposed–infected–recovered–deceased (SEIRD) model with heterogeneous diffusion". Applied Mathematics Letters 111 (2021): 106617. http://dx.doi.org/10.1016/j.aml.2020.106617.
    10.1016/j.aml.2020.106617
  11. McDonald, Elizabeth S.; Romanoff, Justin; Rahbar, Habib; Kitsch, Averi E.; Harvey, Sara M.; Whisenant, Jennifer G.; Yankeelov, Thomas E.; et al. "Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial". Radiology 298 1 (2021): 60-70. http://dx.doi.org/10.1148/radiol.2020202465.
    10.1148/radiol.2020202465
  12. Wu, C.; Hormuth, D.A.; Easley, T.; Eijkhout, V.; Pineda, F.; Karczmar, G.S.; Yankeelov, T.E.. "An in silico validation framework for quantitative DCE-MRI techniques based on a dynamic digital phantom". Medical Image Analysis 73 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85111211263&partnerID=MN8TOARS.
    10.1016/j.media.2021.102186
  13. Hormuth, D.A.; Jarrett, A.M.; Davis, T.; Yankeelov, T.E.. "Towards an image-informed mathematical model of in vivo response to fractionated radiation therapy". Cancers 13 8 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85103618062&partnerID=MN8TOARS.
    10.3390/cancers13081765
  14. Virostko, J.; Sorace, A.G.; Slavkova, K.P.; Kazerouni, A.S.; Jarrett, A.M.; DiCarlo, J.C.; Woodard, S.; et al. "Quantitative multiparametric MRI predicts response to neoadjuvant therapy in the community setting". Breast Cancer Research 23 1 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85120052715&partnerID=MN8TOARS.
    10.1186/s13058-021-01489-6
  15. Lima, E.A.B.F.; Faghihi, D.; Philley, R.; Yang, J.; Virostko, J.; Phillips, C.M.; Yankeelov, T.E.. "Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth". PLoS Computational Biology 17 11 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85120409957&partnerID=MN8TOARS.
    10.1371/journal.pcbi.1008845
  16. Liu, J.; Hormuth, D.A.; Davis, T.; Yang, J.; McKenna, M.T.; Jarrett, A.M.; Enderling, H.; Brock, A.; Yankeelov, T.E.. "A time-resolved experimental-mathematical model for predicting the response of glioma cells to single-dose radiation therapy". Integrative biology : quantitative biosciences from nano to macro 13 7 (2021): 167-183. http://www.scopus.com/inward/record.url?eid=2-s2.0-85112124211&partnerID=MN8TOARS.
    10.1093/intbio/zyab010
  17. Tunc, B.; Hormuth, D.; Biros, G.; Yankeelov, T.E.. "Modeling of Glioma Growth with Mass Effect by Longitudinal Magnetic Resonance Imaging". IEEE Transactions on Biomedical Engineering 68 12 (2021): 3713-3724. http://www.scopus.com/inward/record.url?eid=2-s2.0-85107329592&partnerID=MN8TOARS.
    10.1109/TBME.2021.3085523
  18. Woodall, R.T.; Hormuth, D.A.; Wu, C.; Abdelmalik, M.R.A.; Phillips, W.T.; Bao, A.; Hughes, T.J.R.; Brenner, A.J.; Yankeelov, T.E.. "Patient specific, imaging-informed modeling of rhenium-186 nanoliposome delivery via convection-enhanced delivery in glioblastoma multiforme". Biomedical Physics and Engineering Express 7 4 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85107247901&partnerID=MN8TOARS.
    10.1088/2057-1976/ac02a6
  19. Yang, J.; Virostko, J.; Hormuth, D.A.; Liu, J.; Brock, A.; Kowalski, J.; Yankeelov, T.E.. "An experimental-mathematical approach to predict tumor cell growth as a function of glucose availability in breast cancer cell lines". PLoS ONE 16 7 July (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85109609220&partnerID=MN8TOARS.
    10.1371/journal.pone.0240765
  20. Hormuth, D.A.; Phillips, C.M.; Wu, C.; Lima, E.A.B.F.; Lorenzo, G.; Jha, P.K.; Jarrett, A.M.; Oden, J.T.; Yankeelov, T.E.. "Biologically-based mathematical modeling of tumor vasculature and angiogenesis via time-resolved imaging data". Cancers 13 12 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85107939381&partnerID=MN8TOARS.
    10.3390/cancers13123008
  21. Özkan, A.; Stolley, D.L.; Cressman, E.N.K.; McMillin, M.; DeMorrow, S.; Yankeelov, T.E.; Rylander, M.N.. "Tumor Microenvironment Alters Chemoresistance of Hepatocellular Carcinoma Through CYP3A4 Metabolic Activity". Frontiers in Oncology 11 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85110010051&partnerID=MN8TOARS.
    10.3389/fonc.2021.662135
  22. Jarrett, A.M.; Kazerouni, A.S.; Wu, C.; Virostko, J.; Sorace, A.G.; DiCarlo, J.C.; Hormuth, D.A.; et al. "Quantitative magnetic resonance imaging and tumor forecasting of breast cancer patients in the community setting". Nature Protocols 16 11 (2021): 5309-5338. http://www.scopus.com/inward/record.url?eid=2-s2.0-85115334787&partnerID=MN8TOARS.
    10.1038/s41596-021-00617-y
  23. Hormuth, D.A.; Al Feghali, K.A.; Elliott, A.M.; Yankeelov, T.E.; Chung, C.. "Image-based personalization of computational models for predicting response of high-grade glioma to chemoradiation". Scientific Reports 11 1 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85104509710&partnerID=MN8TOARS.
    10.1038/s41598-021-87887-4
  24. McGarry, S.D.; Brehler, M.; Bukowy, J.D.; Lowman, A.K.; Bobholz, S.A.; Duenweg, S.R.; Banerjee, A.; et al. "Multi-Site Concordance of Diffusion-Weighted Imaging Quantification for Assessing Prostate Cancer Aggressiveness". Journal of Magnetic Resonance Imaging (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85118887092&partnerID=MN8TOARS.
    10.1002/jmri.27983
  25. Whisenant, Jennifer G; Romanoff, Justin; Rahbar, Habib; Kitsch, Averi E; Harvey, Sara M; Moy, Linda; DeMartini, Wendy B; et al. "Factors Affecting Image Quality and Lesion Evaluability in Breast Diffusion-weighted MRI: Observations from the ECOG-ACRIN Cancer Research Group Multisite Trial (A6702)". Journal of Breast Imaging 3 1 (2020): 44-56. http://dx.doi.org/10.1093/jbi/wbaa103.
    10.1093/jbi/wbaa103
  26. Jarrett, Angela M.; Hormuth, David A.; Wu, Chengyue; Kazerouni, Anum S.; Ekrut, David A.; Virostko, John; Sorace, Anna G.; et al. "Evaluating patient-specific neoadjuvant regimens for breast cancer via a mathematical model constrained by quantitative magnetic resonance imaging data". Neoplasia 22 12 (2020): 820-830. http://dx.doi.org/10.1016/j.neo.2020.10.011.
    10.1016/j.neo.2020.10.011
  27. Kazerouni, Anum S.; Gadde, Manasa; Gardner, Andrea; Hormuth, David A.; Jarrett, Angela M.; Johnson, Kaitlyn E.; Lima, Ernesto A.B. F.; et al. "Integrating Quantitative Assays with Biologically Based Mathematical Modeling for Predictive Oncology". iScience 23 12 (2020): 101807. http://dx.doi.org/10.1016/j.isci.2020.101807.
    10.1016/j.isci.2020.101807
  28. Jarrett, Angela M.; Hormuth, David A.; Adhikarla, Vikram; Sahoo, Prativa; Abler, Daniel; Tumyan, Lusine; Schmolze, Daniel; et al. "Towards integration of 64Cu-DOTA-trastuzumab PET-CT and MRI with mathematical modeling to predict response to neoadjuvant therapy in HER2¿+¿breast cancer". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-77397-0.
    10.1038/s41598-020-77397-0
  29. Johnson, Kaitlyn E; Howard, Grant R; Morgan, Daylin; Brenner, Eric A; Gardner, Andrea L; Durrett, Russell E; Mo, William; et al. "Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer". Physical Biology 18 1 (2020): 016001. http://dx.doi.org/10.1088/1478-3975/abb09c.
    10.1088/1478-3975/abb09c
  30. Song, Patrick N.; Mansur, Ameer; Dugger, Kari J.; Davis, Tessa R.; Howard, Grant; Yankeelov, Thomas E.; Sorace, Anna G.. "CD4 T-cell immune stimulation of HER2¿+¿breast cancer cells alters response to trastuzumab in vitro". Cancer Cell International 20 1 (2020): http://dx.doi.org/10.1186/s12935-020-01625-w.
    10.1186/s12935-020-01625-w
  31. Sorace, Anna G.; Elkassem, Asser A.; Galgano, Samuel J.; Lapi, Suzanne E.; Larimer, Benjamin M.; Partridge, Savannah C.; Quarles, C. Chad; et al. "Imaging for Response Assessment in Cancer Clinical Trials". Seminars in Nuclear Medicine 50 6 (2020): 488-504. http://dx.doi.org/10.1053/j.semnuclmed.2020.05.001.
    10.1053/j.semnuclmed.2020.05.001
  32. Shoghi, Kooresh I.; Badea, Cristian T.; Blocker, Stephanie J.; Chenevert, Thomas L.; Laforest, Richard; Lewis, Michael T.; Luker, Gary D.; et al. "Co-Clinical Imaging Resource Program (CIRP): Bridging the Translational Divide to Advance Precision Medicine". Tomography 6 3 (2020): 273-287. http://dx.doi.org/10.18383/j.tom.2020.00023.
    10.18383/j.tom.2020.00023
  33. Wu, Chengyue; Hormuth, David A.; Oliver, Todd A.; Pineda, Federico; Lorenzo, Guillermo; Karczmar, Gregory S.; Moser, Robert D.; Yankeelov, Thomas E.. "Patient-Specific Characterization of Breast Cancer Hemodynamics Using Image-Guided Computational Fluid Dynamics". IEEE Transactions on Medical Imaging 39 9 (2020): 2760-2771. http://dx.doi.org/10.1109/tmi.2020.2975375.
    10.1109/tmi.2020.2975375
  34. Viguerie, Alex; Veneziani, Alessandro; Lorenzo, Guillermo; Baroli, Davide; Aretz-Nellesen, Nicole; Patton, Alessia; Yankeelov, Thomas E.; et al. "Diffusion–reaction compartmental models formulated in a continuum mechanics framework: application to COVID-19, mathematical analysis, and numerical study". Computational Mechanics 66 5 (2020): 1131-1152. http://dx.doi.org/10.1007/s00466-020-01888-0.
    10.1007/s00466-020-01888-0
  35. Gadde, Manasa; Phillips, Caleb; Ghousifam, Neda; Sorace, Anna G.; Wong, Enoch; Krishnamurthy, Savitri; Syed, Anum; et al. "In vitro vascularized tumor platform for modeling tumor-vasculature interactions of inflammatory breast cancer". Biotechnology and Bioengineering 117 11 (2020): 3572-3590. http://dx.doi.org/10.1002/bit.27487.
    10.1002/bit.27487
  36. Syed, Anum K.; Whisenant, Jennifer G.; Barnes, Stephanie L.; Sorace, Anna G.; Yankeelov, Thomas E.. "Multiparametric Analysis of Longitudinal Quantitative MRI Data to Identify Distinct Tumor Habitats in Preclinical Models of Breast Cancer". Cancers 12 6 (2020): 1682. http://dx.doi.org/10.3390/cancers12061682.
    10.3390/cancers12061682
  37. Whisenant, Jennifer G.; Williams, Jason M.; Kang, Hakmook; Arlinghaus, Lori R.; Abramson, Richard G.; Abramson, Vandana G.; Fakhoury, Kareem; Chakravarthy, A. Bapsi; Yankeelov, Thomas E.. "Quantitative Comparison of Prone and Supine PERCIST Measurements in Breast Cancer". Tomography 6 2 (2020): 170-176. http://dx.doi.org/10.18383/j.tom.2020.00002.
    10.18383/j.tom.2020.00002
  38. Faghihi, Danial; Feng, Xinzeng; Lima, Ernesto A.B.F.; Oden, J. Tinsley; Yankeelov, Thomas E.. "A coupled mass transport and deformation theory of multi-constituent tumor growth". Journal of the Mechanics and Physics of Solids 139 (2020): 103936. http://dx.doi.org/10.1016/j.jmps.2020.103936.
    10.1016/j.jmps.2020.103936
  39. Özkan, Alican; Stolley, Danielle; Cressman, Erik N. K.; McMillin, Matthew; DeMorrow, Sharon; Yankeelov, Thomas E.; Rylander, Marissa Nichole. "The Influence of Chronic Liver Diseases on Hepatic Vasculature: A Liver-on-a-chip Review". Micromachines 11 5 (2020): 487. http://dx.doi.org/10.3390/mi11050487.
    10.3390/mi11050487
  40. Jarrett, Angela M.; Faghihi, Danial; Hormuth, David A.; Lima, Ernesto A. B. F.; Virostko, John; Biros, George; Patt, Debra; Yankeelov, Thomas E.. "Optimal Control Theory for Personalized Therapeutic Regimens in Oncology: Background, History, Challenges, and Opportunities". Journal of Clinical Medicine 9 5 (2020): 1314. http://dx.doi.org/10.3390/jcm9051314.
    10.3390/jcm9051314
  41. Bloom, Meghan J.; Jarrett, Angela M.; Triplett, Todd A.; Syed, Anum K.; Davis, Tessa; Yankeelov, Thomas E.; Sorace, Anna G.. "Anti-HER2 induced myeloid cell alterations correspond with increasing vascular maturation in a murine model of HER2+ breast cancer". BMC Cancer 20 1 (2020): http://dx.doi.org/10.1186/s12885-020-06868-4.
    10.1186/s12885-020-06868-4
  42. Phillips, Caleb M.; Lima, Ernesto A. B. F.; Woodall, Ryan T.; Brock, Amy; Yankeelov, Thomas E.. "A hybrid model of tumor growth and angiogenesis: In silico experiments". PLOS ONE 15 4 (2020): e0231137. http://dx.doi.org/10.1371/journal.pone.0231137.
    10.1371/journal.pone.0231137
  43. Virostko, J.; Capasso, A.; Yankeelov, T.E.; Goodgame, B.. "Reply to Appropriate considerations of “rural” in National Cancer Data Base analyses". Cancer 126 7 (2020): 1586-1587. http://www.scopus.com/inward/record.url?eid=2-s2.0-85076232825&partnerID=MN8TOARS.
    10.1002/cncr.32650
  44. Chou, C.-K.; Liu, Y.-L.; Chen, Y.-I.; Huang, P.-J.; Tsou, P.-H.; Chen, C.-T.; Lee, H.-H.; et al. "Digital Receptor Occupancy Assay in Quantifying On- And Off-Target Binding Affinities of Therapeutic Antibodies". ACS Sensors 5 2 (2020): 296-302. http://www.scopus.com/inward/record.url?eid=2-s2.0-85080056364&partnerID=MN8TOARS.
    10.1021/acssensors.9b01736
  45. Hormuth, D.A.; Jarrett, A.M.; Yankeelov, T.E.. "Forecasting tumor and vasculature response dynamics to radiation therapy via image based mathematical modeling". Radiation Oncology 15 1 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85077393756&partnerID=MN8TOARS.
    10.1186/s13014-019-1446-2
  46. Bell, L.C.; Semmineh, N.; An, H.; Eldeniz, C.; Wahl, R.; Schmainda, K.M.; Prah, M.A.; et al. "Evaluating the use of rcbv as a tumor grade and treatment response classifier across nci quantitative imaging network sites: Part ii of the dsc-mri digital reference object (dro) challenge". Tomography 6 2 (2020): 203-208. http://www.scopus.com/inward/record.url?eid=2-s2.0-85086686948&partnerID=MN8TOARS.
    10.18383/j.tom.2020.00012
  47. Liu, Yen-Liang; Horning, Aaron M.; Lieberman, Brandon; Kim, Mirae; Lin, Che-Kuang; Hung, Chia-Nung; Chou, Chih-Wei; et al. "Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer". Cancers 11 12 (2019): 1910. http://dx.doi.org/10.3390/cancers11121910.
    10.3390/cancers11121910
  48. Hormuth, David A.; Jarrett, Angela M.; Lima, Ernesto A.B.F.; McKenna, Matthew T.; Fuentes, David T.; Yankeelov, Thomas E.. "Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data". JCO Clinical Cancer Informatics 3 (2019): 1-10. http://dx.doi.org/10.1200/cci.18.00055.
    10.1200/cci.18.00055
  49. Jarrett, Angela M.; Shah, Alay; Bloom, Meghan J.; McKenna, Matthew T.; Hormuth, David A.; Yankeelov, Thomas E.; Sorace, Anna G.; et al. "Experimentally-driven mathematical modeling to improve combination targeted and cytotoxic therapy for HER2+ breast cancer". Scientific Reports 9 1 (2019): http://dx.doi.org/10.1038/s41598-019-49073-5.
    10.1038/s41598-019-49073-5
  50. Virostko, John; Capasso, Anna; Yankeelov, Thomas E.; Goodgame, Boone; Virostko, J.; Capasso, A.; Yankeelov, T.E.; Goodgame, B.. "Recent trends in the age at diagnosis of colorectal cancer in the US National Cancer Data Base, 2004-2015". Cancer 125 21 (2019): 3828-3835. http://dx.doi.org/10.1002/cncr.32347.
    10.1002/cncr.32347
  51. McKenna, Matthew T.; Weis, Jared A.; Quaranta, Vito; Yankeelov, Thomas E.; McKenna, M.T.; Weis, J.A.; Quaranta, V.; Yankeelov, T.E.. "Leveraging Mathematical Modeling to Quantify Pharmacokinetic and Pharmacodynamic Pathways: Equivalent Dose Metric". Frontiers in Physiology 10 MAY (2019): http://dx.doi.org/10.3389/fphys.2019.00616.
    10.3389/fphys.2019.00616
  52. Hormuth, David A.; Sorace, Anna G.; Virostko, John; Abramson, Richard G.; Bhujwalla, Zaver M.; Enriquez-Navas, Pedro; Gillies, Robert; et al. "Translating preclinical MRI methods to clinical oncology". Journal of Magnetic Resonance Imaging 50 5 (2019): 1377-1392. http://dx.doi.org/10.1002/jmri.26731.
    10.1002/jmri.26731
  53. Rockne, R.C.; Hawkins-Daarud, A.; Swanson, K.R.; Sluka, J.P.; Glazier, J.A.; Macklin, P.; Hormuth, D.A.; et al. "The 2019 mathematical oncology roadmap". Physical Biology 16 4 (2019): 041005. http://www.scopus.com/inward/record.url?eid=2-s2.0-85068488850&partnerID=MN8TOARS.
    10.1088/1478-3975/ab1a09
  54. Bell, L.C.; Semmineh, N.; An, H.; Eldeniz, C.; Wahl, R.; Schmainda, K.M.; Prah, M.A.; et al. "Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO)". Tomography (Ann Arbor, Mich.) 5 1 (2019): 110-117. http://www.scopus.com/inward/record.url?eid=2-s2.0-85069176881&partnerID=MN8TOARS.
    10.18383/j.tom.2018.00041
  55. Bloom, M.J.; Saksena, S.D.; Swain, G.P.; Behar, M.S.; Yankeelov, T.E.; Sorace, A.G.; Bloom, Meghan J.; et al. "The effects of IKK-beta inhibition on early NF-kappa-B activation and transcription of downstream genes". Cellular Signalling 55 (2019): 17-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-85058706231&partnerID=MN8TOARS.
    10.1016/j.cellsig.2018.12.004
  56. Yankeelov, T.E.. "The Quantitative Imaging Network: A Decade of Achievement". Tomography (Ann Arbor, Mich.) 5 1 (2019): A8-A8. http://www.scopus.com/inward/record.url?eid=2-s2.0-85071524882&partnerID=MN8TOARS.
    10.18383/j.tom.2019.00999
  57. Syed, A.K.; Woodall, R.; Whisenant, J.G.; Yankeelov, T.E.; Sorace, A.G.. "Characterizing Trastuzumab-Induced Alterations in Intratumoral Heterogeneity with Quantitative Imaging and Immunohistochemistry in HER2+ Breast Cancer". Neoplasia (United States) 21 1 (2019): 17-29. http://www.scopus.com/inward/record.url?eid=2-s2.0-85056846676&partnerID=MN8TOARS.
    10.1016/j.neo.2018.10.008
  58. Virostko, J.; Sorace, A.G.; Wu, C.; Ekrut, D.; Jarrett, A.M.; Upadhyaya, R.M.; Avery, S.; et al. "Magnetization Transfer MRI of Breast Cancer in the Community Setting: Reproducibility and Preliminary Results in Neoadjuvant Therapy". Tomography (Ann Arbor, Mich.) 5 1 (2019): 44-52. http://www.scopus.com/inward/record.url?eid=2-s2.0-85071560436&partnerID=MN8TOARS.
    10.18383/j.tom.2018.00019
  59. Chen, Y.-I.; Chang, Y.-J.; Nguyen, T.D.; Liu, C.; Phillion, S.; Kuo, Y.-A.; Vu, H.T.; et al. "Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method". Journal of the American Chemical Society 141 40 (2019): 15747-15750. http://www.scopus.com/inward/record.url?eid=2-s2.0-85072929538&partnerID=MN8TOARS.
    10.1021/jacs.9b08036
  60. Hormuth, D.A.; Jarrett, A.M.; Feng, X.; Yankeelov, T.E.; Hormuth, David A.; Jarrett, Angela M.; Feng, Xinzeng; Yankeelov, Thomas E.. "Calibrating a Predictive Model of Tumor Growth and Angiogenesis with Quantitative MRI". Annals of Biomedical Engineering 47 7 (2019): 1539-1551. http://www.scopus.com/inward/record.url?eid=2-s2.0-85064249830&partnerID=MN8TOARS.
    10.1007/s10439-019-02262-9
  61. Liu, Y.-L.; Chou, C.-K.; Kim, M.; Vasisht, R.; Kuo, Y.-A.; Ang, P.; Liu, C.; et al. "Assessing metastatic potential of breast cancer cells based on EGFR dynamics". Scientific Reports 9 1 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85062413056&partnerID=MN8TOARS.
    10.1038/s41598-018-37625-0
  62. Liu, Y.-L.; Horning, A.M.; Lieberman, B.; Kim, M.; Lin, C.-K.; Hung, C.-N.; Chou, C.-W.; et al. "Spatial EGFR dynamics and metastatic phenotypes modulated by upregulated Ephb2 and Src pathways in advanced prostate cancer". Cancers 11 12 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85078135964&partnerID=MN8TOARS.
    10.3390/cancers11121910
  63. Feng, X.; Hormuth, D.A.; Yankeelov, T.E.. "An adjoint-based method for a linear mechanically-coupled tumor model: application to estimate the spatial variation of murine glioma growth based on diffusion weighted magnetic resonance imaging". Computational Mechanics 63 2 (2019): 159-180. http://www.scopus.com/inward/record.url?eid=2-s2.0-85047893198&partnerID=MN8TOARS.
    10.1007/s00466-018-1589-2
  64. Jarrett, A.M.; Bloom, M.J.; Godfrey, W.; Syed, A.K.; Ekrut, D.A.; Ehrlich, L.I.; Yankeelov, T.E.; Sorace, A.G.. "Mathematical modelling of trastuzumab-induced immune response in an in vivo murine model of HER2+ breast cancer". Mathematical medicine and biology : a journal of the IMA 36 3 (2019): 381-410. http://www.scopus.com/inward/record.url?eid=2-s2.0-85072014214&partnerID=MN8TOARS.
    10.1093/imammb/dqy014
  65. Hormuth, D.A.; Jarrett, A.M.; Lima, E.A.B.F.; McKenna, M.T.; Fuentes, D.T.; Yankeelov, T.E.. "Mechanism-based modeling of tumor growth and treatment response constrained by multiparametric imaging data". JCO Clinical Cancer Informatics 3 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85068507657&partnerID=MN8TOARS.
    10.1200/CCI.18.00055
  66. Wu, C.; Pineda, F.; Hormuth, D.A.; Karczmar, G.S.; Yankeelov, T.E.. "Quantitative analysis of vascular properties derived from ultrafast DCE-MRI to discriminate malignant and benign breast tumors". Magnetic Resonance in Medicine 81 3 (2019): 2147-2160. http://www.scopus.com/inward/record.url?eid=2-s2.0-85055481378&partnerID=MN8TOARS.
    10.1002/mrm.27529
  67. Ozkan, A.; Ghousifam, N.; Hoopes, P.J.; Yankeelov, T.E.; Rylander, M.N.. "In vitro vascularized liver and tumor tissue microenvironments on a chip for dynamic determination of nanoparticle transport and toxicity". Biotechnology and Bioengineering 116 5 (2019): 1201-1219. http://www.scopus.com/inward/record.url?eid=2-s2.0-85061474760&partnerID=MN8TOARS.
    10.1002/bit.26919
  68. Jarrett, Angela M.; Lima, Ernesto A.B.F.; Hormuth, David A.; McKenna, Matthew T.; Feng, Xinzeng; Ekrut, David A.; Resende, Anna Claudia M.; et al. "Mathematical models of tumor cell proliferation: A review of the literature". Expert Review of Anticancer Therapy 18 12 (2018): 1271-1286. http://dx.doi.org/10.1080/14737140.2018.1527689.
    10.1080/14737140.2018.1527689
  69. Lima, E. A. B. F.; Ghousifam, N.; Ozkan, A.; Oden, J. T.; Shahmoradi, A.; Rylander, M. N.; Wohlmuth, B.; et al. "Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-018-32347-9.
    10.1038/s41598-018-32347-9
  70. Hormuth, D.A.; Weis, J.A.; Barnes, S.L.; Miga, M.I.; Quaranta, V.; Yankeelov, T.E.. "Biophysical Modeling of In Vivo Glioma Response After Whole-Brain Radiation Therapy in a Murine Model of Brain Cancer". International Journal of Radiation Oncology Biology Physics 100 5 (2018): 1270-1279. http://www.scopus.com/inward/record.url?eid=2-s2.0-85041610689&partnerID=MN8TOARS.
    10.1016/j.ijrobp.2017.12.004
  71. Newitt, D.C.; Malyarenko, D.; Chenevert, T.L.; Quarles, C.C.; Bell, L.; Fedorov, A.; Fennessy, F.; et al. "Multisite concordance of apparent diffusion coefficient measurements across the NCI quantitative imaging network". Journal of Medical Imaging 5 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85032566078&partnerID=MN8TOARS.
    10.1117/1.JMI.5.1.011003
  72. Sorace, A.G.; Wu, C.; Barnes, S.L.; Jarrett, A.M.; Avery, S.; Patt, D.; Goodgame, B.; et al. "Repeatability, reproducibility, and accuracy of quantitative mri of the breast in the community radiology setting". Journal of Magnetic Resonance Imaging 48 3 (2018): 695-707. http://www.scopus.com/inward/record.url?eid=2-s2.0-85044266397&partnerID=MN8TOARS.
    10.1002/jmri.26011
  73. Sorace, A.G.; Partridge, S.C.; Li, X.; Virostko, J.; Barnes, S.L.; Hippe, D.S.; Huang, W.; Yankeelov, T.E.. "Distinguishing benign and malignant breast tumors: Preliminary comparison of kinetic modeling approaches using multi-institutional dynamic contrast-enhanced MRI data from the International Breast MR Consortium 6883 trial". Journal of Medical Imaging 5 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85041169613&partnerID=MN8TOARS.
    10.1117/1.JMI.5.1.011019
  74. Ger, R.B.; Mohamed, A.S.R.; Awan, M.J.; Ding, Y.; Li, K.; Fave, X.J.; Beers, A.L.; et al. "Publisher Correction: A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations (Scientific Reports (2017) DOI: 10.1038/s41598-017-11554-w)". Scientific Reports 8 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85048285522&partnerID=MN8TOARS.
    10.1038/s41598-018-20639-z
  75. Cardin, D.B.; Goff, L.W.; Chan, E.; Whisenant, J.G.; Dan Ayers, G.; Takebe, N.; Arlinghaus, L.R.; et al. "Dual Src and EGFR inhibition in combination with gemcitabine in advanced pancreatic cancer: phase I results: A phase I clinical trial". Investigational New Drugs 36 3 (2018): 442-450. http://www.scopus.com/inward/record.url?eid=2-s2.0-85030723646&partnerID=MN8TOARS.
    10.1007/s10637-017-0519-z
  76. Virostko, J.; Hainline, A.; Kang, H.; Arlinghaus, L.R.; Abramson, R.G.; Barnes, S.L.; Blume, J.D.; et al. "Dynamic contrast-enhanced magnetic resonance imaging and diffusion-weighted magnetic resonance imaging for predicting the response of locally advanced breast cancer to neoadjuvant therapy: A meta-analysis". Journal of Medical Imaging 5 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85038428351&partnerID=MN8TOARS.
    10.1117/1.JMI.5.1.011011
  77. Jarrett, A.M.; Hormuth, D.A.; Barnes, S.L.; Feng, X.; Huang, W.; Yankeelov, T.E.. "Incorporating drug delivery into an imaging-driven, mechanics-coupled reaction diffusion model for predicting the response of breast cancer to neoadjuvant chemotherapy: Theory and preliminary clinical results". Physics in Medicine and Biology 63 10 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85047987529&partnerID=MN8TOARS.
    10.1088/1361-6560/aac040
  78. McKenna, M.T.; Weis, J.A.; Quaranta, V.; Yankeelov, T.E.. "Variable Cell Line Pharmacokinetics Contribute to Non-Linear Treatment Response in Heterogeneous Cell Populations". Annals of Biomedical Engineering 46 6 (2018): 899-911. http://www.scopus.com/inward/record.url?eid=2-s2.0-85042532832&partnerID=MN8TOARS.
    10.1007/s10439-018-2001-2
  79. Rocha, H.L.; Almeida, R.C.; Lima, E.A.B.F.; Resende, A.C.M.; Oden, J.T.; Yankeelov, T.E.. "A hybrid three-scale model of tumor growth". Mathematical Models and Methods in Applied Sciences 28 1 (2018): 61-93. http://www.scopus.com/inward/record.url?eid=2-s2.0-85038113973&partnerID=MN8TOARS.
    10.1142/S0218202518500021
  80. Howard, G.R.; Johnson, K.E.; Rodriguez Ayala, A.; Yankeelov, T.E.; Brock, A.; Howard, Grant R.; Johnson, Kaitlyn E.; et al. "A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer". Scientific Reports 8 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85051634675&partnerID=MN8TOARS.
    10.1038/s41598-018-30467-w
  81. McKenna, M.T.; Weis, J.A.; Brock, A.; Quaranta, V.; Yankeelov, T.E.. "Precision Medicine with Imprecise Therapy: Computational Modeling for Chemotherapy in Breast Cancer". Translational Oncology 11 3 (2018): 732-742. http://www.scopus.com/inward/record.url?eid=2-s2.0-85045414852&partnerID=MN8TOARS.
    10.1016/j.tranon.2018.03.009
  82. Woodall, R.T.; Barnes, S.L.; Hormuth, D.A.; Sorace, A.G.; Quarles, C.C.; Yankeelov, T.E.. "The effects of intravoxel contrast agent diffusion on the analysis of DCE-MRI data in realistic tissue domains". Magnetic Resonance in Medicine 80 1 (2018): 330-340. http://www.scopus.com/inward/record.url?eid=2-s2.0-85044572859&partnerID=MN8TOARS.
    10.1002/mrm.26995
  83. Bane, O.; Hectors, S.J.; Wagner, M.; Arlinghaus, L.L.; Aryal, M.P.; Cao, Y.; Chenevert, T.L.; et al. "Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study". Magnetic Resonance in Medicine 79 5 (2018): 2564-2575. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029499148&partnerID=MN8TOARS.
    10.1002/mrm.26903
  84. Elhalawani, H.; Ger, R.B.; Mohamed, A.S.R.; Awan, M.J.; Ding, Y.; Li, K.; Fave, X.J.; et al. "Data descriptor: Dynamic contrastenhanced magnetic resonance imaging for head and neck cancers". Scientific Data 5 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85042038471&partnerID=MN8TOARS.
    10.1038/sdata.2018.8
  85. Malyarenko, D.; Fedorov, A.; Bell, L.; Prah, M.; Hectors, S.; Arlinghaus, L.; Muzi, M.; et al. "Toward uniform implementation of parametric map digital imaging and communication in medicine standard in multisite quantitative diffusion imaging studies". Journal of Medical Imaging 5 1 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85033437268&partnerID=MN8TOARS.
    10.1117/1.JMI.5.1.011006
  86. Rahman, M.M.; Feng, Y.; Yankeelov, T.E.; Oden, J.T.. "A fully coupled space–time multiscale modeling framework for predicting tumor growth". Computer Methods in Applied Mechanics and Engineering 320 (2017): 261-286. http://www.scopus.com/inward/record.url?eid=2-s2.0-85017363079&partnerID=MN8TOARS.
    10.1016/j.cma.2017.03.021
  87. Hormuth, D.A.; Weis, J.A.; Barnes, S.L.; Miga, M.I.; Rericha, E.C.; Quaranta, V.; Yankeelov, T.E.. "A mechanically coupled reaction-diffusion model that incorporates intra-tumoural heterogeneity to predict in vivo glioma growth". Journal of the Royal Society, Interface 14 128 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85032435133&partnerID=MN8TOARS.
    10.1098/rsif.2016.1010
  88. Weis, J.A.; Miga, M.I.; Yankeelov, T.E.. "Three-dimensional image-based mechanical modeling for predicting the response of breast cancer to neoadjuvant therapy". Computer Methods in Applied Mechanics and Engineering 314 (2017): 494-512. http://www.scopus.com/inward/record.url?eid=2-s2.0-84994496691&partnerID=MN8TOARS.
    10.1016/j.cma.2016.08.024
  89. Hu, Z.; Li, Y.; Van Nieuwenhuijze, A.; Selden, H.J.; Jarrett, A.M.; Sorace, A.G.; Yankeelov, T.E.; Liston, A.; Ehrlich, L.I.R.. "CCR7 Modulates the Generation of Thymic Regulatory T Cells by Altering the Composition of the Thymic Dendritic Cell Compartment". Cell Reports 21 1 (2017): 168-180. http://www.scopus.com/inward/record.url?eid=2-s2.0-85030725969&partnerID=MN8TOARS.
    10.1016/j.celrep.2017.09.016
  90. Lima, E.A.B.F.; Oden, J.T.; Wohlmuth, B.; Shahmoradi, A.; Hormuth, D.A.; Yankeelov, T.E.; Scarabosio, L.; Horger, T.. "Selection and validation of predictive models of radiation effects on tumor growth based on noninvasive imaging data". Computer Methods in Applied Mechanics and Engineering 327 (2017): 277-305. http://www.scopus.com/inward/record.url?eid=2-s2.0-85028698824&partnerID=MN8TOARS.
    10.1016/j.cma.2017.08.009
  91. McKenna, M.T.; Weis, J.A.; Barnes, S.L.; Tyson, D.R.; Miga, M.I.; Quaranta, V.; Yankeelov, T.E.. "A Predictive Mathematical Modeling Approach for the Study of Doxorubicin Treatment in Triple Negative Breast Cancer". Scientific Reports 7 1 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85025134713&partnerID=MN8TOARS.
    10.1038/s41598-017-05902-z
  92. Ger, R.B.; Mohamed, A.S.R.; Awan, M.J.; Ding, Y.; Li, K.; Fave, X.J.; Beers, A.L.; et al. "A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations". Scientific Reports 7 1 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85029332732&partnerID=MN8TOARS.
    10.1038/s41598-017-11554-w
  93. Barnes, S.L.; Sorace, A.G.; Whisenant, J.G.; McIntyre, J.O.; Kang, H.; Yankeelov, T.E.. "DCE- and DW-MRI as early imaging biomarkers of treatment response in a preclinical model of triple negative breast cancer". NMR in Biomedicine 30 11 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85029419982&partnerID=MN8TOARS.
    10.1002/nbm.3799
  94. Wang, D.; Arlinghaus, L.R.; Yankeelov, T.E.; Yang, X.; Smith, D.S.. "Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast". International Journal of Biomedical Imaging 2017 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85029806858&partnerID=MN8TOARS.
    10.1155/2017/7835749
  95. Sorace, A.G.; Harvey, S.; Syed, A.; Yankeelov, T.E.. "Imaging Considerations and Interprofessional Opportunities in the Care of Breast Cancer Patients in the Neoadjuvant Setting". Seminars in Oncology Nursing 33 4 (2017): 425-439. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029481372&partnerID=MN8TOARS.
    10.1016/j.soncn.2017.08.008
  96. Sorace, A.G.; Syed, A.K.; Barnes, S.L.; Quarles, C.C.; Sanchez, V.; Kang, H.; Yankeelov, T.E.. "Quantitative [18F]FMISO PET Imaging Shows Reduction of Hypoxia Following Trastuzumab in a Murine Model of HER2+ Breast Cancer". Molecular Imaging and Biology 19 1 (2017): 130-137. http://www.scopus.com/inward/record.url?eid=2-s2.0-84981249590&partnerID=MN8TOARS.
    10.1007/s11307-016-0994-1
  97. O'Connor, J.P.B.; Aboagye, E.O.; Adams, J.E.; Aerts, H.J.W.L.; Barrington, S.F.; Beer, A.J.; Boellaard, R.; et al. "Imaging biomarker roadmap for cancer studies". Nature Reviews Clinical Oncology 14 3 (2017): 169-186. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982113402&partnerID=MN8TOARS.
    10.1038/nrclinonc.2016.162
  98. Huang, Wei; Chen, Yiyi; Fedorov, Andriy; Li, Xia; Jajamovich, Guido H.; Malyarenko, Dariya I.; Aryal, Madhava P.; et al. "The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge". Tomography 2 1 (2016): 56-66. http://dx.doi.org/10.18383/j.tom.2015.00184.
    10.18383/j.tom.2015.00184
  99. Sorace, A.G.; Quarles, C.C.; Whisenant, J.G.; Hanker, A.B.; McIntyre, J.O.; Sanchez, V.M.; Yankeelov, T.E.. "Trastuzumab improves tumor perfusion and vascular delivery of cytotoxic therapy in a murine model of HER2+ breast cancer: preliminary results". Breast Cancer Research and Treatment 155 2 (2016): 273-284. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955665658&partnerID=MN8TOARS.
    10.1007/s10549-016-3680-8
  100. Lima, E.A.B.F.; Oden, J.T.; Hormuth, D.A.; Yankeelov, T.E.; Almeida, R.C.. "Selection, calibration, and validation of models of tumor growth". Mathematical Models and Methods in Applied Sciences 26 12 (2016): 2341-2368. http://www.scopus.com/inward/record.url?eid=2-s2.0-84990224409&partnerID=MN8TOARS.
    10.1142/S021820251650055X
  101. Abramson, R.G.; Arlinghaus, L.R.; Dula, A.N.; Quarles, C.C.; Stokes, A.M.; Weis, J.A.; Whisenant, J.G.; et al. "MR Imaging Biomarkers in Oncology Clinical Trials". Magnetic Resonance Imaging Clinics of North America 24 1 (2016): 11-29. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955117879&partnerID=MN8TOARS.
    10.1016/j.mric.2015.08.002
  102. Malyarenko, D.I.; Newitt, D.; Wilmes, L.J.; Tudorica, A.; Helmer, K.G.; Arlinghaus, L.R.; Jacobs, M.A.; et al. "Demonstration of nonlinearity bias in the measurement of the apparent diffusion coefficient in multicenter trials". Magnetic Resonance in Medicine 75 3 (2016): 1312-1323. http://www.scopus.com/inward/record.url?eid=2-s2.0-84946177511&partnerID=MN8TOARS.
    10.1002/mrm.25754
  103. Chan, E.; Arlinghaus, L.R.; Cardin, D.B.; Goff, L.; Berlin, J.D.; Parikh, A.; Abramson, R.G.; et al. "Phase i trial of vorinostat added to chemoradiation with capecitabine in pancreatic cancer". Radiotherapy and Oncology 119 2 (2016): 312-318. http://www.scopus.com/inward/record.url?eid=2-s2.0-84963804466&partnerID=MN8TOARS.
    10.1016/j.radonc.2016.04.013
  104. Williams, J.M.; Arlinghaus, L.R.; Rani, S.D.; Shone, M.D.; Abramson, V.G.; Pendyala, P.; Chakravarthy, A.B.; et al. "Towards real-time topical detection and characterization of FDG dose infiltration prior to PET imaging". European Journal of Nuclear Medicine and Molecular Imaging 43 13 (2016): 2374-2380. http://www.scopus.com/inward/record.url?eid=2-s2.0-84983442329&partnerID=MN8TOARS.
    10.1007/s00259-016-3477-3
  105. Stokes, A.M.; Skinner, J.T.; Yankeelov, T.; Quarles, C.C.. "Assessment of a simplified spin and gradient echo (sSAGE) approach for human brain tumor perfusion imaging". Magnetic Resonance Imaging 34 9 (2016): 1248-1255. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982822120&partnerID=MN8TOARS.
    10.1016/j.mri.2016.07.004
  106. Yankeelov, T.E.; Miga, M.I.. "Introduction to the Special Section on Clinical Applications of Multi-Scale Modeling". Annals of Biomedical Engineering 44 9 (2016): 2589-2590. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982295144&partnerID=MN8TOARS.
    10.1007/s10439-016-1702-7
  107. Yankeelov, T.E.; Mankoff, D.A.; Schwartz, L.H.; Lieberman, F.S.; Buatti, J.M.; Mountz, J.M.; Erickson, B.J.; et al. "Quantitative imaging in cancer clinical trials". Clinical Cancer Research 22 2 (2016): 284-290. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958750599&partnerID=MN8TOARS.
    10.1158/1078-0432.CCR-14-3336
  108. Yankeelov, T.E.; An, G.; Saut, O.; Luebeck, E.G.; Popel, A.S.; Ribba, B.; Vicini, P.; et al. "Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success". Annals of Biomedical Engineering 44 9 (2016): 2626-2641. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978091970&partnerID=MN8TOARS.
    10.1007/s10439-016-1691-6
  109. Barnes, S.L.; Sorace, A.G.; Loveless, M.E.; Whisenant, J.G.; Yankeelov, T.E.. "Correlation of tumor characteristics derived from DCE-MRI and DW-MRI with histology in murine models of breast cancer". NMR in Biomedicine 28 10 (2015): 1345-1356. http://www.scopus.com/inward/record.url?eid=2-s2.0-84941745077&partnerID=MN8TOARS.
    10.1002/nbm.3377
  110. Weis, J.A.; Miga, M.I.; Arlinghaus, L.R.; Li, X.; Abramson, V.; Chakravarthy, A.B.; Pendyala, P.; Yankeelov, T.E.. "Predicting the response of breast cancer to neoadjuvant therapy using a mechanically coupled reaction-diffusion model". Cancer Research 75 22 (2015): 4697-4707. http://www.scopus.com/inward/record.url?eid=2-s2.0-84954552913&partnerID=MN8TOARS.
    10.1158/0008-5472.CAN-14-2945
  111. Conley, R.H.; Meszoely, I.M.; Weis, J.A.; Pheiffer, T.S.; Arlinghaus, L.R.; Yankeelov, T.E.; Miga, M.I.. "Realization of a biomechanical model-assisted image guidance system for breast cancer surgery using supine MRI". International Journal of Computer Assisted Radiology and Surgery 10 12 (2015): 1985-1996. http://www.scopus.com/inward/record.url?eid=2-s2.0-84947027615&partnerID=MN8TOARS.
    10.1007/s11548-015-1235-9
  112. Smith, D.S.; Li, X.; Arlinghaus, L.R.; Yankeelov, T.E.; BrianWelch, E.. "DCEMRI.jl: A fast, validated, open source toolkit for dynamic contrast enhanced MRI analysis". PeerJ 2015 3 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84982740425&partnerID=MN8TOARS.
    10.7717/peerj.909
  113. Li, X.; Abramson, R.G.; Arlinghaus, L.R.; Kang, H.; Chakravarthy, A.B.; Abramson, V.G.; Farley, J.; et al. "Multiparametric magnetic resonance imaging for predicting pathological response after the first cycle of neoadjuvant chemotherapy in breast cancer". Investigative Radiology 50 4 (2015): 195-204. http://www.scopus.com/inward/record.url?eid=2-s2.0-84925254591&partnerID=MN8TOARS.
    10.1097/RLI.0000000000000100
  114. Williams, J.M.; Rani, S.D.; Li, X.; Arlinghaus, L.R.; Lee, T.-C.; MacDonald, L.R.; Partridge, S.C.; et al. "Comparison of prone versus supine 18F-FDG-PET of locally advanced breast cancer: Phantom and preliminary clinical studies". Medical Physics 42 7 (2015): 3801-3813. http://www.scopus.com/inward/record.url?eid=2-s2.0-84935878500&partnerID=MN8TOARS.
    10.1118/1.4921363
  115. Dula, A.N.; Dewey, B.E.; Arlinghaus, L.R.; Williams, J.M.; Klomp, D.; Yankeelov, T.E.; Smith, S.. "Optimization of 7-T chemical exchange saturation transfer parameters for validation of glycosaminoglycan and amide proton transfer of fibroglandular breast tissue". Radiology 275 1 (2015): 255-261. http://www.scopus.com/inward/record.url?eid=2-s2.0-84926433376&partnerID=MN8TOARS.
    10.1148/radiol.14140762
  116. Baheza, R.A.; Welch, E.B.; Gochberg, D.F.; Sanders, M.; Harvey, S.; Gore, J.C.; Yankeelov, T.E.. "Detection of microcalcifications by characteristic magnetic susceptibility effects using MR phase image cross-correlation analysis". Medical Physics 42 3 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923870384&partnerID=MN8TOARS.
    10.1118/1.4908009
  117. Felix, D.D.; Gore, J.C.; Yankeelov, T.E.; Peterson, T.E.; Barnes, S.; Whisenant, J.; Weis, J.; et al. "Detection of breast cancer microcalcification using 99mTc-MDP SPECT or Osteosense 750EX FMT imaging". Nuclear Medicine and Biology 42 3 (2015): 269-273. http://www.scopus.com/inward/record.url?eid=2-s2.0-84922945080&partnerID=MN8TOARS.
    10.1016/j.nucmedbio.2014.11.010
  118. Rosenkrantz, A.B.; Mendiratta-Lala, M.; Bartholmai, B.J.; Ganeshan, D.; Abramson, R.G.; Burton, K.R.; Yu, J.P.J.; et al. "Clinical Utility of Quantitative Imaging". Academic Radiology 22 1 (2015): 33-49. http://www.scopus.com/inward/record.url?eid=2-s2.0-84919459881&partnerID=MN8TOARS.
    10.1016/j.acra.2014.08.011
  119. Yankeelov, T.E.; Quaranta, V.; Evans, K.J.; Rericha, E.C.. "Toward a science of tumor forecasting for clinical oncology". Cancer Research 75 6 (2015): 918-923. http://www.scopus.com/inward/record.url?eid=2-s2.0-84941623816&partnerID=MN8TOARS.
    10.1158/0008-5472.CAN-14-2233
  120. Abramson, R.G.; Lambert, K.F.; Jones-Jackson, L.B.; Arlinghaus, L.R.; Williams, J.; Abramson, V.G.; Chakravarthy, A.B.; Yankeelov, T.E.. "Prone Versus Supine Breast FDG-PET/CT for Assessing Locoregional Disease Distribution in Locally Advanced Breast Cancer". Academic Radiology 22 7 (2015): 853-859. http://www.scopus.com/inward/record.url?eid=2-s2.0-84930575609&partnerID=MN8TOARS.
    10.1016/j.acra.2015.02.012
  121. Hormuth Ii, D.A.; Weis, J.A.; Barnes, S.L.; Miga, M.I.; Rericha, E.C.; Quaranta, V.; Yankeelov, T.E.. "Predicting in vivo glioma growth with the reaction diffusion equation constrained by quantitative magnetic resonance imaging data". Physical Biology 12 4 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84937547837&partnerID=MN8TOARS.
    10.1088/1478-3975/12/4/046006
  122. Abramson, R.G.; Burton, K.R.; Yu, J.P.J.; Scalzetti, E.M.; Yankeelov, T.E.; Rosenkrantz, A.B.; Mendiratta-Lala, M.; et al. "Methods and Challenges in Quantitative Imaging Biomarker Development". Academic Radiology 22 1 (2015): 25-32. http://www.scopus.com/inward/record.url?eid=2-s2.0-84919416236&partnerID=MN8TOARS.
    10.1016/j.acra.2014.09.001
  123. Weis, J.A.; Flint, K.M.; Sanchez, V.; Yankeelov, T.E.; Miga, M.I.. "Assessing the accuracy and reproducibility of modality independent elastography in a murine model of breast cancer". Journal of Medical Imaging 2 3 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84955164047&partnerID=MN8TOARS.
    10.1117/1.JMI.2.3.036001
  124. Yankeelov, T.E.; Abramson, R.G.; Quarles, C.C.. "Quantitative multimodality imaging in cancer research and therapy". Nature Reviews Clinical Oncology 11 11 (2014): 670-680. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908502300&partnerID=MN8TOARS.
    10.1038/nrclinonc.2014.134
  125. Hormuth, D.A.; Skinner, J.T.; Does, M.D.; Yankeelov, T.E.. "A comparison of individual and population-derived vascular input functions for quantitative DCE-MRI in rats". Magnetic Resonance Imaging 32 4 (2014): 397-401. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896397434&partnerID=MN8TOARS.
    10.1016/j.mri.2013.12.019
  126. Li, X.; Kang, H.; Arlinghaus, L.R.; Abramson, R.G.; Chakravarthy, A.B.; Abramson, V.G.; Farley, J.; Sanders, M.; Yankeelov, T.E.. "Analyzing spatial heterogeneity in DCE-and DW-MRI parametric maps to optimize prediction of pathologic response to neoadjuvant chemotherapy in breast cancer". Translational Oncology 7 1 (2014): 14-22. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902507718&partnerID=MN8TOARS.
    10.1593/tlo.13748
  127. Mountz, J.M.; Yankeelov, T.E.; Rubin, D.L.; Buatti, J.M.; Erikson, B.J.; Fennessy, F.M.; Gillies, R.J.; et al. "Letter to cancer center directors: Progress in quantitative imaging as a means to predict and/or measure tumor response in cancer therapy Trials". Journal of Clinical Oncology 32 19 (2014): 2115-2116. http://www.scopus.com/inward/record.url?eid=2-s2.0-84905828904&partnerID=MN8TOARS.
    10.1200/JCO.2014.55.8866
  128. Bryant, N.D.; Li, K.; Does, M.D.; Barnes, S.; Gochberg, D.F.; Yankeelov, T.E.; Park, J.H.; Damon, B.M.. "Multi-parametric MRI characterization of inflammation in murine skeletal muscle". NMR in Biomedicine 27 6 (2014): 716-725. http://www.scopus.com/inward/record.url?eid=2-s2.0-84899821698&partnerID=MN8TOARS.
    10.1002/nbm.3113
  129. Li, X.; Arlinghaus, L.R.; Ayers, G.D.; Chakravarthy, A.B.; Abramson, R.G.; Abramson, V.G.; Atuegwu, N.; et al. "DCE-MRI analysis methods for predicting the response of breast cancer to neoadjuvant chemotherapy: Pilot study findings". Magnetic Resonance in Medicine 71 4 (2014): 1592-1602. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896544797&partnerID=MN8TOARS.
    10.1002/mrm.24782
  130. Wilson III, G.H.; Gore, J.C.; Yankeelov, T.E.; Barnes, S.; Peterson, T.E.; True, J.M.; Shokouhi, S.; et al. "An approach to breast cancer diagnosis via PET imaging of microcalcifications using 18F-NaF". Journal of Nuclear Medicine 55 7 (2014): 1138-1143. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904110648&partnerID=MN8TOARS.
    10.2967/jnumed.114.139170
  131. Whisenant, J.G.; Ayers, G.D.; Loveless, M.E.; Barnes, S.L.; Colvin, D.C.; Yankeelov, T.E.. "Assessing reproducibility of diffusion-weighted magnetic resonance imaging studies in a murine model of HER2+ breast cancer". Magnetic Resonance Imaging 32 3 (2014): 245-249. http://www.scopus.com/inward/record.url?eid=2-s2.0-84894252973&partnerID=MN8TOARS.
    10.1016/j.mri.2013.10.013
  132. Fedorov, A.; Fluckiger, J.; Ayers, G.D.; Li, X.; Gupta, S.N.; Tempany, C.; Mulkern, R.; Yankeelov, T.E.; Fennessy, F.M.. "A comparison of two methods for estimating DCE-MRI parameters via individual and cohort based AIFs in prostate cancer: A step towards practical implementation". Magnetic Resonance Imaging 32 4 (2014): 321-329. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896393053&partnerID=MN8TOARS.
    10.1016/j.mri.2014.01.004
  133. Seeley, E.H.; Wilson, K.J.; Yankeelov, T.E.; Johnson, R.W.; Gore, J.C.; Caprioli, R.M.; Matrisian, L.M.; Sterling, J.A.. "Co-registration of multi-modality imaging allows for comprehensive analysis of tumor-induced bone disease". Bone 61 (2014): 208-216. http://www.scopus.com/inward/record.url?eid=2-s2.0-84894042246&partnerID=MN8TOARS.
    10.1016/j.bone.2014.01.017
  134. Whisenant, J.G.; Sorace, A.G.; McIntyre, J.O.; Kang, H.; Sánchez, V.; Loveless, M.E.; Yankeelov, T.E.. "Evaluating treatment response using DW-MRI and DCE-MRI in trastuzumab responsive and resistant HER2-overexpressing human breast cancer xenografts". Translational Oncology 7 6 (2014): 768-779. http://www.scopus.com/inward/record.url?eid=2-s2.0-84915803057&partnerID=MN8TOARS.
    10.1016/j.tranon.2014.09.011
  135. Atuegwu, N.C.; Li, X.; Arlinghaus, L.R.; Abramson, R.G.; Williams, J.M.; Chakravarthy, A.B.; Abramson, V.G.; Yankeelov, T.E.. "Longitudinal, intermodality registration of quantitative breast PET and MRI data acquired before and during neoadjuvant chemotherapy: Preliminary results". Medical Physics 41 5 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84903172996&partnerID=MN8TOARS.
    10.1118/1.4870966
  136. Huang, W.; Li, X.; Chen, Y.; Chang, M.-C.; Oborski, M.J.; Malyarenko, D.I.; Muzi, M.; et al. "Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: A multicenter data analysis challenge". Translational Oncology 7 1 (2014): 153-166. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902493742&partnerID=MN8TOARS.
    10.1593/tlo.13838
  137. Whisenant, J.G.; McIntyre, J.O.; Peterson, T.E.; Kang, H.; Sánchez, V.; Manning, H.C.; Arteaga, C.L.; Yankeelov, T.E.. "Utility of [18 F]FLT-PET to Assess Treatment Response in Trastuzumab-Resistant and Trastuzumab-Sensitive HER2-Overexpressing Human Breast Cancer Xenografts". Molecular Imaging and Biology 17 1 (2014): 119-128. http://www.scopus.com/inward/record.url?eid=2-s2.0-84939874398&partnerID=MN8TOARS.
    10.1007/s11307-014-0770-z
  138. Barnes, S.L.; Quarles, C.C.; Yankeelov, T.E.. "Modeling the effect of intra-voxel diffusion of contrast agent on the quantitative analysis of dynamic contrast enhanced magnetic resonance imaging". PLoS ONE 9 10 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84907480831&partnerID=MN8TOARS.
    10.1371/journal.pone.0108726
  139. Chenevert, T.L.; Malyarenko, D.I.; Newitt, D.; Li, X.; Jayatilake, M.; Tudorica, A.; Fedorov, A.; et al. "Errors in quantitative image analysis due to platform-dependent image scaling". Translational Oncology 7 1 (2014): 65-71. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902517646&partnerID=MN8TOARS.
    10.1593/tlo.13811
  140. Zhu, H.; Arlinghaus, L.R.; Whisenant, J.G.; Li, M.; Gore, J.C.; Yankeelov, T.E.. "Sequence design and evaluation of the reproducibility of water-selective diffusion-weighted imaging of the breast at 3T". NMR in Biomedicine 27 9 (2014): 1030-1036. http://www.scopus.com/inward/record.url?eid=2-s2.0-84905919666&partnerID=MN8TOARS.
    10.1002/nbm.3146
  141. Fluckiger, J.U.; Li, X.; Whisenant, J.G.; Peterson, T.E.; Gore, J.C.; Yankeelov, T.E.. "Using dynamic contrast-enhanced magnetic resonance imaging data to constrain a positron emission tomography kinetic model: Theory and simulations". International Journal of Biomedical Imaging 2013 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84886481068&partnerID=MN8TOARS.
    10.1155/2013/576470
  142. Yankeelov, T.E.; Atuegwu, N.; Hormuth, D.; Weis, J.A.; Barnes, S.L.; Miga, M.I.; Rericha, E.C.; Quaranta, V.. "Clinically relevant modeling of tumor growth and treatment response". Science Translational Medicine 5 187 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84880539630&partnerID=MN8TOARS.
    10.1126/scitranslmed.3005686
  143. Weis, J.A.; Miga, M.I.; Arlinghaus, L.R.; Li, X.; Chakravarthy, A.B.; Abramson, V.; Farley, J.; Yankeelov, T.E.. "A mechanically coupled reaction-diffusion model for predicting the response of breast tumors to neoadjuvant chemotherapy". Physics in Medicine and Biology 58 17 (2013): 5851-5866. http://www.scopus.com/inward/record.url?eid=2-s2.0-84883182841&partnerID=MN8TOARS.
    10.1088/0031-9155/58/17/5851
  144. Mani, S.; Chen, Y.; Li, X.; Arlinghaus, L.; Chakravarthy, A.B.; Abramson, V.; Bhave, S.R.; et al. "Machine learning for predicting the response of breast cancer to neoadjuvant chemotherapy". Journal of the American Medical Informatics Association 20 4 (2013): 688-695. http://www.scopus.com/inward/record.url?eid=2-s2.0-84882999508&partnerID=MN8TOARS.
    10.1136/amiajnl-2012-001332
  145. Barnes, S.L.; Whisenant, J.G.; Loveless, M.E.; Ayers, G.D.; Yankeelov, T.E.. "Assessing the reproducibility of dynamic contrast enhanced magnetic resonance imaging in a murine model of breast cancer". Magnetic Resonance in Medicine 69 6 (2013): 1721-1734. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878115482&partnerID=MN8TOARS.
    10.1002/mrm.24422
  146. Abramson, R.G.; Li, X.; Hoyt, T.L.; Su, P.-F.; Arlinghaus, L.R.; Wilson, K.J.; Abramson, V.G.; Chakravarthy, A.B.; Yankeelov, T.E.. "Early assessment of breast cancer response to neoadjuvant chemotherapy by semi-quantitative analysis of high-temporal resolution DCE-MRI: Preliminary results". Magnetic Resonance Imaging 31 9 (2013): 1457-1464. http://www.scopus.com/inward/record.url?eid=2-s2.0-84885077368&partnerID=MN8TOARS.
    10.1016/j.mri.2013.07.002
  147. Whisenant, J.G.; Peterson, T.E.; Fluckiger, J.U.; Tantawy, M.N.; Ayers, G.D.; Yankeelov, T.E.. "Reproducibility of static and dynamic 18F-FDG, 18F-FLT, and 18F-FMISO MicroPET studies in a murine model of HER2+ breast cancer". Molecular Imaging and Biology 15 1 (2013): 87-96. http://www.scopus.com/inward/record.url?eid=2-s2.0-84873078731&partnerID=MN8TOARS.
    10.1007/s11307-012-0564-0
  148. Klomp, D.W.J.; Dula, A.N.; Arlinghaus, L.R.; Italiaander, M.; Dortch, R.D.; Zu, Z.; Williams, J.M.; et al. "Amide proton transfer imaging of the human breast at 7T: Development and reproducibility". NMR in Biomedicine 26 10 (2013): 1271-1277. http://www.scopus.com/inward/record.url?eid=2-s2.0-84883759519&partnerID=MN8TOARS.
    10.1002/nbm.2947
  149. Fluckiger, J.U.; Loveless, M.E.; Barnes, S.L.; Lepage, M.; Yankeelov, T.E.. "A diffusion-compensated model for the analysis of DCE-MRI data: Theory, simulations and experimental results". Physics in Medicine and Biology 58 6 (2013): 1983-1998. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874907981&partnerID=MN8TOARS.
    10.1088/0031-9155/58/6/1983
  150. Smith, D.S.; Li, X.; Abramson, R.G.; Quarles, C.C.; Yankeelov, T.E.; Welch, E.B.. "Potential of compressed sensing in quantitative MR imaging of cancer". Cancer Imaging 13 4 (2013): 633-644. http://www.scopus.com/inward/record.url?eid=2-s2.0-84891913034&partnerID=MN8TOARS.
    10.1102/1470-7330.2013.0041
  151. Dula, A.N.; Arlinghaus, L.R.; Dortch, R.D.; Dewey, B.E.; Whisenant, J.G.; Ayers, G.D.; Yankeelov, T.E.; Smith, S.A.. "Amide proton transfer imaging of the breast at 3 T: Establishing reproducibility and possible feasibility assessing chemotherapy response". Magnetic Resonance in Medicine 70 1 (2013): 216-224. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879412534&partnerID=MN8TOARS.
    10.1002/mrm.24450
  152. Atuegwu, N.C.; Arlinghaus, L.R.; Li, X.; Chakravarthy, A.B.; Abramson, V.G.; Sanders, M.E.; Yankeelov, T.E.. "Parameterizing the logistic model of tumor growth by DW-MRI and DCE-MRI data to predict treatment response and changes in breast cancer cellularity during neoadjuvant chemotherapy". Translational Oncology 6 3 (2013): 256-264. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878717612&partnerID=MN8TOARS.
    10.1593/tlo.13130
  153. Yankeelov, T.E.; Peterson, T.E.; Abramson, R.G.; Izquierdo-Garcia, D.; Arlinghaus, L.R.; Li, X.; Atuegwu, N.C.; et al. "Erratum to "Simultaneous PET-MRI in oncology: A solution looking for a problem?" [Magn Reson Imaging 30 (2012):1342-1356]". Magnetic Resonance Imaging 31 5 (2013): 796-796. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877148963&partnerID=MN8TOARS.
    10.1016/j.mri.2013.01.015
  154. Yankeelov, T.E.; Peterson, T.E.; Abramson, R.G.; Garcia-Izquierdo, D.; Arlinghaus, L.R.; Li, X.; Atuegwu, N.C.; et al. "Simultaneous PET-MRI in oncology: A solution looking for a problem?". Magnetic Resonance Imaging 30 9 (2012): 1342-1356. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867140164&partnerID=MN8TOARS.
    10.1016/j.mri.2012.06.001
  155. Abramson, R.G.; Arlinghaus, L.R.; Weis, J.A.; Li, X.; Dula, A.N.; Chekmenev, E.Y.; Smith, S.A.; et al. "Current and emerging quantitative magnetic resonance imaging methods for assessing and predicting the response of breast cancer to neoadjuvant therapy". Breast Cancer: Targets and Therapy 4 (2012): 139-154. http://www.scopus.com/inward/record.url?eid=2-s2.0-84869237394&partnerID=MN8TOARS.
    10.2147/BCTT.S35882
  156. Loveless, M.E.; Halliday, J.; Liess, C.; Xu, L.; Dortch, R.D.; Whisenant, J.; Waterton, J.C.; Gore, J.C.; Yankeelov, T.E.. "A quantitative comparison of the influence of individual versus population-derived vascular input functions on dynamic contrast enhanced-MRI in small animals". Magnetic Resonance in Medicine 67 1 (2012): 226-236. http://www.scopus.com/inward/record.url?eid=2-s2.0-84355162265&partnerID=MN8TOARS.
    10.1002/mrm.22988
  157. Skinner, J.T.; Yankeelov, T.E.; Peterson, T.E.; Does, M.D.. "Comparison of dynamic contrast-enhanced MRI and quantitative SPECT in a rat glioma model". Contrast Media and Molecular Imaging 7 6 (2012): 494-500. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866444609&partnerID=MN8TOARS.
    10.1002/cmmi.1479
  158. Li, X.; Abramson, R.G.; Arlinghaus, L.R.; Chakravarthy, A.B.; Abramson, V.; Mayer, I.; Farley, J.; Delbeke, D.; Yankeelov, T.E.. "An algorithm for longitudinal registration of PET/CT images acquired during neoadjuvant chemotherapy in breast cancer: Preliminary results". EJNMMI Research 2 1 (2012): 1-11. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875288151&partnerID=MN8TOARS.
    10.1186/2191-219X-2-62
  159. Smith, D.S.; Gore, J.C.; Yankeelov, T.E.; Welch, E.B.. "Real-time compressive sensing MRI reconstruction using GPU computing and split Bregman methods". International Journal of Biomedical Imaging 2012 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84863369242&partnerID=MN8TOARS.
    10.1155/2012/864827
  160. Loveless, M.E.; Lawson, D.; Collins, M.; Prasad Nadella, M.V.; Reimer, C.; Huszar, D.; Halliday, J.; et al. "Comparisons of the efficacy of a Jak1/2 inhibitor (AZD1480) with a VEGF signaling inhibitor (Cediranib) and sham treatments in mouse tumors using DCE-MRI, DW-MRI, and histology". Neoplasia 14 1 (2012): 54-64. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857022117&partnerID=MN8TOARS.
    10.1593/neo.111478
  161. Smith, D.S.; Li, X.; Gambrell, J.V.; Arlinghaus, L.R.; Quarles, C.C.; Yankeelov, T.E.; Welch, E.B.. "Robustness of quantitative compressive sensing MRI: The effect of random undersampling patterns on derived parameters for DCE- and DSC-MRI". IEEE Transactions on Medical Imaging 31 2 (2012): 504-511. http://www.scopus.com/inward/record.url?eid=2-s2.0-84856719176&partnerID=MN8TOARS.
    10.1109/TMI.2011.2172216
  162. Adkins, C.T.; Dobish, J.N.; Brown, C.S.; Mayrsohn, B.; Hamilton, S.K.; Udoji, F.; Radford, K.; et al. "High relaxivity MRI imaging reagents from bimodal star polymers". Polymer Chemistry 3 2 (2012): 390-398. http://www.scopus.com/inward/record.url?eid=2-s2.0-84855656311&partnerID=MN8TOARS.
    10.1039/c1py00474c
  163. Quarles, C.C.; Gore, J.C.; Xu, L.; Yankeelov, T.E.. "Comparison of dual-echo DSC-MRI- and DCE-MRI-derived contrast agent kinetic parameters". Magnetic Resonance Imaging 30 7 (2012): 944-953. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864001581&partnerID=MN8TOARS.
    10.1016/j.mri.2012.03.008
  164. Yankeelov, T.E.; Gore, J.C.. "Preface to the special issue on quantitative imaging in cancer". Magnetic Resonance Imaging 30 9 (2012): 1201-1202. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867142737&partnerID=MN8TOARS.
    10.1016/j.mri.2012.07.002
  165. Atuegwu, N.C.; Colvin, D.C.; Loveless, M.E.; Xu, L.; Gore, J.C.; Yankeelov, T.E.. "Incorporation of diffusion-weighted magnetic resonance imaging data into a simple mathematical model of tumor growth". Physics in Medicine and Biology 57 1 (2012): 225-240. http://www.scopus.com/inward/record.url?eid=2-s2.0-83455236028&partnerID=MN8TOARS.
    10.1088/0031-9155/57/1/225
  166. Li, X.; Welch, E.B.; Chakravarthy, A.B.; Xu, L.; Arlinghaus, L.R.; Farley, J.; Mayer, I.A.; et al. "Statistical comparison of dynamic contrast-enhanced MRI pharmacokinetic models in human breast cancer". Magnetic Resonance in Medicine 68 1 (2012): 261-271. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862267303&partnerID=MN8TOARS.
    10.1002/mrm.23205
  167. Colvin, D.C.; Loveless, M.E.; Does, M.D.; Yue, Z.; Yankeelov, T.E.; Gore, J.C.. "Earlier detection of tumor treatment response using magnetic resonance diffusion imaging with oscillating gradients". Magnetic Resonance Imaging 29 3 (2011): 315-323. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952533315&partnerID=MN8TOARS.
    10.1016/j.mri.2010.10.003
  168. Cron, G.O.; Foottit, C.; Yankeelov, T.E.; Avruch, L.I.; Schweitzer, M.E.; Cameron, I.. "Arterial input functions determined from MR signal magnitude and phase for quantitative dynamic contrast-enhanced MRI in the human pelvis". Magnetic Resonance in Medicine 66 2 (2011): 498-504. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960601892&partnerID=MN8TOARS.
    10.1002/mrm.22856
  169. Arlinghaus, L.R.; Welch, E.B.; Chakravarthy, A.B.; Xu, L.; Farley, J.S.; Abramson, V.G.; Grau, A.M.; et al. "Motion correction in diffusion-weighted MRI of the breast at 3T". Journal of Magnetic Resonance Imaging 33 5 (2011): 1063-1070. http://www.scopus.com/inward/record.url?eid=2-s2.0-79955379146&partnerID=MN8TOARS.
    10.1002/jmri.22562
  170. Atuegwu, N.C.; Arlinghaus, L.R.; Li, X.; Welch, E.B.; Chakravarthy, B.A.; Gore, J.C.; Yankeelov, T.E.. "Integration of diffusion-weighted MRI data and a simple mathematical model to predict breast tumor cellularity during neoadjuvant chemotherapy". Magnetic Resonance in Medicine 66 6 (2011): 1689-1696. http://www.scopus.com/inward/record.url?eid=2-s2.0-81355160433&partnerID=MN8TOARS.
    10.1002/mrm.23203
  171. Arlinghaus, L.R.; Li, X.; Rahman, A.R.; Welch, E.B.; Xu, L.; Gore, J.C.; Yankeelov, T.E.. "On the relationship between the apparent diffusion coefficient and extravascular extracellular volume fraction in human breast cancer". Magnetic Resonance Imaging 29 5 (2011): 630-638. http://www.scopus.com/inward/record.url?eid=2-s2.0-79956123750&partnerID=MN8TOARS.
    10.1016/j.mri.2011.02.004
  172. Gore, J.C.; Manning, H.C.; Quarles, C.C.; Waddell, K.W.; Yankeelov, T.E.. "Magnetic resonance in the era of molecular imaging of cancer". Magnetic Resonance Imaging 29 5 (2011): 587-600. http://www.scopus.com/inward/record.url?eid=2-s2.0-79956161755&partnerID=MN8TOARS.
    10.1016/j.mri.2011.02.003
  173. Mani, S.; Chen, Y.; Arlinghaus, L.R.; Li, X.; Chakravarthy, A.B.; Bhave, S.R.; Welch, E.B.; Levy, M.A.; Yankeelov, T.E.. "Early prediction of the response of breast tumors to neoadjuvant chemotherapy using quantitative MRI and machine learning.". AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2011 (2011): 868-877. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872897190&partnerID=MN8TOARS.
  174. Smith, D.S.; Welch, E.B.; Li, X.; Arlinghaus, L.R.; Loveless, M.E.; Koyama, T.; Gore, J.C.; Yankeelov, T.E.. "Quantitative effects of using compressed sensing in dynamic contrast enhanced MRI". Physics in Medicine and Biology 56 15 (2011): 4933-4946. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961038416&partnerID=MN8TOARS.
    10.1088/0031-9155/56/15/018
  175. Yankeelov, T.E.; Arlinghaus, L.R.; Li, X.; Gore, J.C.. "The role of magnetic resonance imaging biomarkers in clinical trials of treatment response in cancer". Seminars in Oncology 38 1 (2011): 16-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952143494&partnerID=MN8TOARS.
    10.1053/j.seminoncol.2010.11.007
  176. Li, X.; Welch, E.B.; Arlinghaus, L.R.; Chakravarthy, A.B.; Xu, L.; Farley, J.; Loveless, M.E.; et al. "A novel AIF tracking method and comparison of DCE-MRI parameters using individual and population-based AIFs in human breast cancer". Physics in Medicine and Biology 56 17 (2011): 5753-5769. http://www.scopus.com/inward/record.url?eid=2-s2.0-80052069215&partnerID=MN8TOARS.
    10.1088/0031-9155/56/17/018
  177. Atuegwu, N.C.; Gore, J.C.; Yankeelov, T.E.. "The integration of quantitative multi-modality imaging data into mathematical models of tumors". Physics in Medicine and Biology 55 9 (2010): 2429-2449. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951184808&partnerID=MN8TOARS.
    10.1088/0031-9155/55/9/001
  178. Li, X.; Dawant, B.M.; Welch, E.B.; Chakravarthy, A.B.; Xu, L.; Mayer, I.; Kelley, M.; et al. "Validation of an algorithm for the nonrigid registration of longitudinal breast MR images using realistic phantoms". Medical Physics 37 6 (2010): 2541-2552. http://www.scopus.com/inward/record.url?eid=2-s2.0-77953525123&partnerID=MN8TOARS.
    10.1118/1.3414035
  179. Gore, J.C.; Xu, J.; Colvin, D.C.; Yankeelov, T.E.; Parsons, E.C.; Does, M.D.. "Characterization of tissue structure at varying length scales using temporal diffusion spectroscopy". NMR in Biomedicine 23 7 (2010): 745-756. http://www.scopus.com/inward/record.url?eid=2-s2.0-78650457456&partnerID=MN8TOARS.
    10.1002/nbm.1531
  180. Yankeelov, T.E.; Arlinghaus, L.R.; Li, X.; Levy, M.; Smith, D.; Welch, E.B.; Gore, J.C.. "Current and future trends in magnetic resonance imaging assessments of the response of breast tumors to neoadjuvant chemotherapy". Journal of Oncology (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-78349297193&partnerID=MN8TOARS.
    10.1155/2010/919620
  181. Buys, S.; Yankeelov, T.. "NCCN Clinical Practice Guidelines in Oncology: Breast Cancer Screening and Diagnosis (Journal of the National Comprehensive Cancer Network (2009) 7, (1060-1096))". JNCCN Journal of the National Comprehensive Cancer Network 8 2 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-77649151764&partnerID=MN8TOARS.
  182. Yankeelov, T.E.; Atuegwu, N.C.; Deane, N.G.; Gore, J.C.. "Modeling tumor growth and treatment response based on quantitative imaging data". Integrative Biology 2 7-8 (2010): 338-345. http://www.scopus.com/inward/record.url?eid=2-s2.0-77955522025&partnerID=MN8TOARS.
    10.1039/b921497f
  183. Quarles, C.C.; Gochberg, D.F.; Gore, J.C.; Yankeelov, T.E.. "A theoretical framework to model DSC-MRI data acquired in the presence of contrast agent extravasation". Physics in Medicine and Biology 54 19 (2009): 5749-5766. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350639597&partnerID=MN8TOARS.
    10.1088/0031-9155/54/19/006
  184. Lee, R.E.; Welch, E.B.; Cobb, J.G.; Sinha, T.; Gore, J.C.; Yankeelov, T.E.. "Implementation of a semi-automated post-processing system for parametric MRI mapping of human breast cancer". Journal of Digital Imaging 22 4 (2009): 424-436. http://www.scopus.com/inward/record.url?eid=2-s2.0-68049137692&partnerID=MN8TOARS.
    10.1007/s10278-008-9123-2
  185. Yankeelov, T.E.; Avison, M.J.; Damon, B.M.; Manning, H.C.; Peterson, T.E.; Gore, J.C.. "Frontiers of biomedical imaging science 2009: Workshop report and research opportunities". Cancer Research 69 20 (2009): 7902-7904. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350214475&partnerID=MN8TOARS.
    10.1158/0008-5472.CAN-09-2521
  186. Gore, J.C.; Yankeelov, T.E.; Peterson, T.E.; Avison, M.J.. "Molecular imaging without radiopharmaceuticals?". Journal of Nuclear Medicine 50 6 (2009): 999-1007. http://www.scopus.com/inward/record.url?eid=2-s2.0-66649096143&partnerID=MN8TOARS.
    10.2967/jnumed.108.059576
  187. Dortch, R.D.; Yankeelov, T.E.; Yue, Z.; Quarles, C.C.; Gore, J.C.; Does, M.D.. "Evidence of multiexponential T2 in rat glioblastoma". NMR in Biomedicine 22 6 (2009): 609-618. http://www.scopus.com/inward/record.url?eid=2-s2.0-70049094767&partnerID=MN8TOARS.
    10.1002/nbm.1374
  188. Planey, C.R.; Welch, E.B.; Xu, L.; Chakravarthy, A.B.; Gatenby, J.C.; Freehardt, D.; Mayer, I.; et al. "Temporal sampling requirements for reference region modeling of DCE-MRI data in human breast cancer". Journal of Magnetic Resonance Imaging 30 1 (2009): 121-134. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650085278&partnerID=MN8TOARS.
    10.1002/jmri.21812
  189. Li, X.; Yankeelov, T.E.; Rosen, G.D.; Gore, J.C.; Dawant, B.M.. "Enhancement of histological volumes through averaging and their use for the analysis of magnetic resonance images". Magnetic Resonance Imaging 27 3 (2009): 401-416. http://www.scopus.com/inward/record.url?eid=2-s2.0-61649098614&partnerID=MN8TOARS.
    10.1016/j.mri.2008.07.016
  190. Li, X.; Dawant, B.M.; Welch, E.B.; Chakravarthy, A.B.; Freehardt, D.; Mayer, I.; Kelley, M.; et al. "A nonrigid registration algorithm for longitudinal breast MR images and the analysis of breast tumor response". Magnetic Resonance Imaging 27 9 (2009): 1258-1270. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349835800&partnerID=MN8TOARS.
    10.1016/j.mri.2009.05.007
  191. Loveless, M.E.; Whisenant, J.G.; Wilson, K.; Lyshchik, A.; Sinha, T.K.; Gore, J.C.; Yankeelov, T.E.. "Coregistration of ultrasonography and magnetic resonance imaging with a preliminary investigation of the spatial colocalization of vascular endothelial growth factor receptor 2 expression and tumor perfusion in a murine tumor model". Molecular Imaging 8 4 (2009): 187-198. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349327818&partnerID=MN8TOARS.
    10.2310/7290.2009.00018
  192. Yankeelov, T.E.; Gore, J.C.. "Has quantitative multimodal imaging of treatment response arrived?". Clinical Cancer Research 15 21 (2009): 6473-6475. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350743122&partnerID=MN8TOARS.
    10.1158/1078-0432.CCR-09-2257
  193. Faranesh, A.Z.; Yankeelov, T.E.. "Incorporating a vascular term into a reference region model for the analysis of DCE-MRI data: A simulation study". Physics in Medicine and Biology 53 10 (2008): 2617-2631. http://www.scopus.com/inward/record.url?eid=2-s2.0-42649112050&partnerID=MN8TOARS.
    10.1088/0031-9155/53/10/012
  194. Li, X.; Yankeelov, T.E.; Peterson, T.E.; Gore, J.C.; Dawant, B.M.. "Automatic nonrigid registration of whole body CT mice images". Medical Physics 35 4 (2008): 1507-1520. http://www.scopus.com/inward/record.url?eid=2-s2.0-41449113521&partnerID=MN8TOARS.
    10.1118/1.2889758
  195. Zhang, Z.; Ramirez, N.E.; Yankeelov, T.E.; Li, Z.; Ford, L.E.; Qi, Y.; Pozzi, A.; Zutter, M.M.. "a2ß1 integrin expression in the tumor microenvironment enhances tumor angiogenesis in a tumor cell-specific manner". Blood 111 4 (2008): 1980-1988. http://www.scopus.com/inward/record.url?eid=2-s2.0-41349111883&partnerID=MN8TOARS.
    10.1182/blood-2007-06-094680
  196. Ou, J.J.; Ong, R.E.; Yankeelov, T.E.; Miga, M.I.. "Evaluation of 3D modality-independent elastography for breast imaging: A simulation study". Physics in Medicine and Biology 53 1 (2008): 147-163. http://www.scopus.com/inward/record.url?eid=2-s2.0-38049052484&partnerID=MN8TOARS.
    10.1088/0031-9155/53/1/010
  197. Colvin, D.C.; Yankeelov, T.E.; Does, M.D.; Yue, Z.; Quarles, C.; Gore, J.C.. "New insights into tumor microstructure using temporal diffusion spectroscopy". Cancer Research 68 14 (2008): 5941-5947. http://www.scopus.com/inward/record.url?eid=2-s2.0-48649085915&partnerID=MN8TOARS.
    10.1158/0008-5472.CAN-08-0832
  198. Sinha, T.K.; Khatib-Shahidi, S.; Yankeelov, T.E.; Mapara, K.; Ehtesham, M.; Cornett, D.S.; Dawant, B.M.; Caprioli, R.M.; Gore, J.C.. "Integrating spatially resolved three-dimensional MALDI IMS with in vivo magnetic resonance imaging". Nature Methods 5 1 (2008): 57-59. http://www.scopus.com/inward/record.url?eid=2-s2.0-37749048043&partnerID=MN8TOARS.
    10.1038/nmeth1147
  199. Yankeelov, T.E.; Luci, J.J.; DeBusk, L.M.; Lin, P.C.; Gore, J.C.. "Incorporating the effects of transcytolemmal water exchange in a reference region model for DCE-MRI analysis: Theory, simulations, and experimental results". Magnetic Resonance in Medicine 59 2 (2008): 326-335. http://www.scopus.com/inward/record.url?eid=2-s2.0-38949098138&partnerID=MN8TOARS.
    10.1002/mrm.21449
  200. Quarles, C.C.; Lepage, M.; Gorden, D.L.; Fingleton, B.; Yankeelov, T.E.; Price, R.R.; Matrisian, L.M.; Gore, J.C.; McIntyre, J.O.. "Functional colonography of Min mice using dark lumen dynamic contrast-enhanced MRI". Magnetic Resonance in Medicine 60 3 (2008): 718-726. http://www.scopus.com/inward/record.url?eid=2-s2.0-51449099960&partnerID=MN8TOARS.
    10.1002/mrm.21724
  201. Loveless, M.E.; Li, X.; Huamani, J.; Lyshchik, A.; Dawant, B.; Hallahan, D.; Gore, J.C.; Yankeelov, T.E.. "A method for assessing the microvasculature in a murine tumor model using contrast-enhanced ultrasonography". Journal of Ultrasound in Medicine 27 12 (2008): 1699-1709. http://www.scopus.com/inward/record.url?eid=2-s2.0-56749085576&partnerID=MN8TOARS.
    10.7863/jum.2008.27.12.1699
  202. Yankeelov, T.E.; Cron, G.O.; Addison, C.L.; Wallace, J.C.; Wilkins, R.C.; Pappas, B.A.; Santyr, G.E.; Gore, J.C.. "Comparison of a reference region model with direct measurement of an AIF in the analysis of DCE-MRI data". Magnetic Resonance in Medicine 57 2 (2007): 353-361. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846822058&partnerID=MN8TOARS.
    10.1002/mrm.21131
  203. Pellerin, M.; Yankeelov, T.E.; Lepage, M.. "Incorporating contrast agent diffusion into the analysis of DCE-MRI data". Magnetic Resonance in Medicine 58 6 (2007): 1124-1134. http://www.scopus.com/inward/record.url?eid=2-s2.0-36849025955&partnerID=MN8TOARS.
    10.1002/mrm.21400
  204. Yankeelov, T.E.; Gore, J.C.. "Dynamic contrast enhanced magnetic resonance imaging in oncology: Theory, data acquisition, analysis, and examples". Current Medical Imaging Reviews 3 2 (2007): 91-107. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248665600&partnerID=MN8TOARS.
    10.2174/157340507780619179
  205. Niermann, K.J.; Fleischer, A.C.; Huamani, J.; Yankeelov, T.E.; Kim, D.W.; Wilson, W.D.; Hallahan, D.E.. "Measuring tumor perfusion in control and treated murine tumors: Correlation of microbubble contrast-enhanced sonography to dynamic contrast-enhanced magnetic resonance imaging and fluorodeoxyglucose positron emission tomography". Journal of Ultrasound in Medicine 26 6 (2007): 749-756. http://www.scopus.com/inward/record.url?eid=2-s2.0-34249864501&partnerID=MN8TOARS.
    10.7863/jum.2007.26.6.749
  206. Yankeelov, T.E.; Lepage, M.; Chakravarthy, A.; Broome, E.E.; Niermann, K.J.; Kelley, M.C.; Meszoely, I.; et al. "Integration of quantitative DCE-MRI and ADC mapping to monitor treatment response in human breast cancer: initial results". Magnetic Resonance Imaging 25 1 (2007): 1-13. http://www.scopus.com/inward/record.url?eid=2-s2.0-33845979885&partnerID=MN8TOARS.
    10.1016/j.mri.2006.09.006
  207. Yankeelov, T.E.; DeBusk, L.M.; Billheimer, D.D.; Luci, J.J.; Lin, P.C.; Price, R.R.; Gore, J.C.. "Repeatability of a reference region model for analysis of murine DCE-MRI data at 7T". Journal of Magnetic Resonance Imaging 24 5 (2006): 1140-1147. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750432502&partnerID=MN8TOARS.
    10.1002/jmri.20729
  208. Yankeelov, T.E.; Niermann, K.J.; Huamani, J.; Kim, D.W.; Quarles, C.C.; Fleischer, A.C.; Hallahan, D.E.; Price, R.R.; Gore, J.C.. "Correlation between estimates of tumor perfusion from microbubble contrast-enhanced sonography and dynamic contrast-enhanced magnetic resonance imaging". Journal of Ultrasound in Medicine 25 4 (2006): 487-497. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646058887&partnerID=MN8TOARS.
    10.7863/jum.2006.25.4.487
  209. Kim, D.W.N.; Huamani, J.; Niermann, K.J.; Lee, H.; Geng, L.; Leavitt, L.L.; Baheza, R.A.; et al. "Noninvasive assessment of tumor vasculature response to radiation-mediated, vasculature-targeted therapy using quantified power Doppler sonography: Implications for improvement of therapy schedules". Journal of Ultrasound in Medicine 25 12 (2006): 1507-1517. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847001644&partnerID=MN8TOARS.
    10.7863/jum.2006.25.12.1507
  210. Li, X.; Huang, W.; Yankeelov, T.E.; Tudorica, A.; Rooney, W.D.; Springer Jr., C.S.. "Shutter-speed analysis of contrast reagent bolus-tracking data: Preliminary observations in benign and malignant breast disease". Magnetic Resonance in Medicine 53 3 (2005): 724-729. http://www.scopus.com/inward/record.url?eid=2-s2.0-14744296171&partnerID=MN8TOARS.
    10.1002/mrm.20405
  211. Yankeelov, T.E.; Luci, J.J.; Lepage, M.; Li, R.; Debusk, L.; Lin, P.C.; Price, R.R.; Gore, J.C.. "Quantitative pharmacokinetic analysis of DCE-MRI data without an arterial input function: A reference region model". Magnetic Resonance Imaging 23 4 (2005): 519-529. http://www.scopus.com/inward/record.url?eid=2-s2.0-20344399898&partnerID=MN8TOARS.
    10.1016/j.mri.2005.02.013
  212. Yankeelov, T.E.; Rooney, W.D.; Huang, W.; Dyke, J.P.; Li, X.; Tudorica, A.; Lee, J.-H.; Koutcher, J.A.; Springer Jr., C.S.. "Evidence for shutter-speed variation in CR bolus-tracking studies of human pathology". NMR in Biomedicine 18 3 (2005): 173-185. http://www.scopus.com/inward/record.url?eid=2-s2.0-14744305898&partnerID=MN8TOARS.
    10.1002/nbm.938
  213. Fleischer, A.C.; Niermann, K.J.; Donnelly, E.F.; Yankeelov, T.E.; Canniff, K.M.; Hallahan, D.E.; Rothenberg, M.E.. "Sonographic depiction of microvessel perfusion: Principles and potential". Journal of Ultrasound in Medicine 23 11 (2004): 1499-1506. http://www.scopus.com/inward/record.url?eid=2-s2.0-6944227670&partnerID=MN8TOARS.
    10.7863/jum.2004.23.11.1499
  214. Zhou, R.; Pickup, S.; Yankeelov, T.E.; Springer Jr., C.S.; Glickson, J.D.. "Simultaneous measurement of arterial input function and tumor pharmacokinetics in mice by dynamic contrast enhanced imaging: Effects of transcytolemmal water exchange". Magnetic Resonance in Medicine 52 2 (2004): 248-257. http://www.scopus.com/inward/record.url?eid=2-s2.0-3543138424&partnerID=MN8TOARS.
    10.1002/mrm.20143
  215. Yankeelov, T.E.; Rooney, W.D.; Li, X.; Springer Jr., C.S.. "Variation of the Relaxographic "Shutter-Speed" for Transcytolemmal Water Exchange Affects the CR Bolus-Tracking Curve Shape". Magnetic Resonance in Medicine 50 6 (2003): 1151-1169. http://www.scopus.com/inward/record.url?eid=2-s2.0-0344305582&partnerID=MN8TOARS.
    10.1002/mrm.10624
Capítulo de livro
  1. Hormuth, D.A.; Eldridge, S.L.; Weis, J.A.; Miga, M.I.; Yankeelov, T.E.. "Mechanically coupled reaction-diffusion model to predict glioma growth: Methodological details". 225-241. 2018.
    10.1007/978-1-4939-7493-1_11
  2. Ortega, R.A.; Yankeelov, T.E.; Giorgio, T.D.. "Magnetic nanoparticles for magnetic resonance imaging: A translational push toward theranostics". 521-548. 2016.
  3. Abramson, R.G.; Yankeelov, T.E.. "Imaging biomarkers and surrogate endpoints in oncology clinical trials". 29-42. 2014.
Livro
  1. Li, X.; Arlinghaus, L.R.; Chakravarthy, A.B.; Farley, J.; Mayer, I.A.; Abramson, V.G.; Kelley, M.C.; et al. Early DCE-MRI changes after longitudinal registration may predict breast cancer response to neoadjuvant chemotherapy. 2012.
    10.1007/978-3-642-31340-0_24
  2. Yankeelov, Tom; Pickens, David R. Quantitative Magnetic Resonance Imaging in Cancer. Imaging in Medical Diagnosis and Therapy. 2011.

Outros

Outra produção
  1. Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth. 2021. Lima, E.A.B.F.; Faghihi, D.; Philley, R.; Yang, J.; Virostko, J.; Phillips, C.M.; Yankeelov, T.E.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85105676160&partnerID=MN8TOARS.
    10.1101/2021.03.03.433731
  2. Towards integration of time-resolved confocal microscopy of a 3D in vitro microfluidic platform with a hybrid multiscale model of tumor angiogenesis. 2021. Phillips, C.M.; Lima, E.A.B.F.; Gadde, M.; Jarrett, A.M.; Rylander, M.N.; Yankeelov, T.E.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85119306918&partnerID=MN8TOARS.
    10.1101/2021.09.29.462293
  3. Quantification of Long-Term Doxorubicin Response Dynamics in Breast Cancer Cell Lines to Direct Treatment Schedules. 2021. Howard, G.; Jost, T.A.; Yankeelov, T.E.; Brock, A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85108389287&partnerID=MN8TOARS.
    10.1101/2021.05.24.445407
  4. Quantitative in vivo imaging to enable tumor forecasting and treatment optimization. 2021. Lorenzo, G.; Hormuth, D.A.; Jarrett, A.M.; Lima, E.A.B.F.; Subramanian, S.; Biros, G.; Oden, J.T.; Hughes, T.J.R.; Yankeelov, T.E.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85102549199&partnerID=MN8TOARS.
  5. Tumor microenvironment alters chemoresistance of hepatocellular carcinoma through CYP3A4 metabolic activity. 2021. Özkan, A.; Stolley, D.L.; Cressman, E.N.K.; McMillin, M.; DeMorrow, S.; Yankeelov, T.E.; Rylander, M.N.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85101264142&partnerID=MN8TOARS.
    10.1101/2021.01.23.427874
  6. Integrating multimodal data sets into a mathematical framework to describe and predict therapeutic resistance in cancer. 2020. Johnson, K.; Howard, G.R.; Morgan, D.; Brenner, E.A.; Gardner, A.L.; Durrett, R.E.; Mo, W.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098896612&partnerID=MN8TOARS.
    10.1101/2020.02.11.943738
  7. An experimental-mathematical approach to predict tumor cell growth as a function of glucose availability in breast cancer cell lines. 2020. Yang, J.; Virostko, J.; Hormuth, D.A.; Liu, J.; Brock, A.; Kowalski, J.; Yankeelov, T.E.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098830833&partnerID=MN8TOARS.
    10.1101/2020.10.05.326041
  8. Deep learning enables rapid and robust analysis of fluorescence lifetime imaging in photon-starved conditions. 2020. Chen, Y.-I.; Chang, Y.-J.; Liao, S.-C.; Nguyen, T.D.; Yang, J.; Kuo, Y.-A.; Hong, S.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85099895001&partnerID=MN8TOARS.
    10.1101/2020.12.02.408195
  9. Towards integration of 64Cu-DOTA-Trasztusumab PET-CT and MRI with mathematical modeling to predict response to neoadjuvant therapy in HER2+ breast cancer. 2020. Jarrett, A.M.; Hormuth, D.A.; Adhikarla, V.; Sahoo, P.; Abler, D.; Tumyan, L.; Schmolze, D.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85099410504&partnerID=MN8TOARS.
    10.1101/2020.06.10.20127639
  10. Simulating the spread of covid-19 via a spatially-resolved susceptible-exposed-infected-recovered-deceased (seird) model with heterogeneous diffusion. 2020. Viguerie, A.; Lorenzo, G.; Auricchio, F.; Baroli, D.; Hughes, T.J.R.; Patton, A.; Reali, A.; Yankeelov, T.E.; Veneziani, A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095104019&partnerID=MN8TOARS.
  11. In vitro vascularized tumor platform for modeling breast tumor stromal interactions and characterizing the subsequent response. 2018. Gadde, M.; Sorace, A.G.; Wong, E.; Syed, A.; Phillips, C.; Rahal, O.; Yankeelov, T.E.; Woodward, W.A.; Rylander, M.N.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85094476630&partnerID=MN8TOARS.
  12. A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer. 2017. Howard, G.R.; Johnson, K.E.; Ayala, A.R.; Yankeelov, T.E.; Brock, A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095641059&partnerID=MN8TOARS.
    10.1101/207605
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2021 159 scholarly presentations in invited seminars at renowned institutions and multiple scientific events (98 of them by invitation), and presenting author or coauthor of 301 contributions to national and international conferences.

Arbitragem científica em revista

Nome da revista (ISSN) Editora
2016 - Atual JCO Clinical Cancer Informatics
2015 - Atual Tomography (2379-139X) "Grapho, LLC"
2014 - Atual Breast Cancer Research (1465-5411) Springer (Biomed Central Ltd.)
2009 - Atual Magnetic Resonance Imaging (0730-725X) Elsevier
2012 - 2015 Medical Physics

Comissão de avaliação

Descrição da atividade
Tipo de assessoria 		Instituição / Organização Entidade financiadora
2020 - Atual Grant application peer reviewer for 10 editions of high-impact research programs in the US

Curso / Disciplina lecionado

Disciplina Curso (Tipo) Instituição / Organização
2020 - Atual TEY has been teacher in 13 courses on quantitative characterization of cancer using in vivo imaging within major scientific conferences (e.g., ISMRM, AACR, SPIE, RSNA)
2016 - Atual TEY has been teacher of a graduate course on computational oncology and and an undergraduate course on biomedical imaging modalities for 4 consecutive academic courses. TEY has also given a guest lecture on medical imaging at an undergraduate course on Computational Fundamentals of BME Design. The University of Texas at Austin, Estados Unidos
2006 - 2012 TEY has been a teacher of regular graduate courses and guest lectures on cancer imaging, mathematical and physical foundations of imaging methods, and biophysical models of cancer. TEY has also given lectures on quantitative imaging in graduate courses of cancer biology. At undergraduate level, TEY has delivered regular lectures on mathematical and physical methods for biomedical engineering and organized lab sessions. TEY also developed an undergraduate course on scientific insights into music. Vanderbilt University, Estados Unidos

Membro de associação

Nome da associação Tipo de participação
2018 - Atual Society of Mathematical Biology
2016 - Atual Biomedical Engineering Society
2014 - Atual Institute of Electrical and Electronics Engineers
2014 - Atual American Institute of Medical and Biological Engineering
2011 - Atual American Association of Physicists in Medicine
2005 - Atual American Association of Cancer Researchers
2001 - Atual International Society for Magnetic Resonance in Medicine

Membro de comissão

Descrição da atividade
Tipo de participação 		Instituição / Organização
2020 - Atual Participation in the committee of 15 major scientific networks, workshops, and events on computational modeling of cancer, quantitative magnetic resonance imaging methods for cancer, and multidisciplinar cancer research
Distinções

Prémio

2019 ASCO/AACR Methods in Clinical Cancer Research Workshop, Best Lecture
2004 Radiological Society of North America Research Fellow Trainee Prize
Radiological Society of North America, Estados Unidos
2000 Award for Associate Instructors of Physics
Indiana University Bloomington Department of Physics, Estados Unidos
1998 Rothrock Award for Associate Instructors
Indiana University Department of Mathematics, Estados Unidos

Outra distinção

2014 Elected to Council of Distinguished Investigators of the Academy of Radiology Research
Academy of Radiology Research, Estados Unidos
2014 Elected to the College of Fellows of the American Institute of Medical and Biological Engineering
American Institute of Medical and Biological Engineering, Estados Unidos
2013 Distinguished Reviewer for Magnetic Resonance in Medicine
Magnetic Resonance in Medicine, Estados Unidos
2012 Distinguished Reviewer for Medical Physics
Medical Physics, Estados Unidos
2012 Distinguished Reviewer for Journal of Magnetic Resonance Imaging
Journal of Magnetic Resonance Imaging, Estados Unidos
2012 Distinguished Reviewer for Magnetic Resonance in Medicine
Magnetic Resonance in Medicine, Estados Unidos
2012 Nominee for President of MR of Cancer Study Group, ISMRM
International Society for Magnetic Resonance in Medicine, Estados Unidos
2011 Distinguished Reviewer for Journal of Magnetic Resonance Imaging
Journal of Magnetic Resonance Imaging, Estados Unidos
2011 Distinguished Reviewer for Magnetic Resonance in Medicine
Magnetic Resonance in Medicine, Estados Unidos
2011 Paper selected for Physics in Medicine and Biology ‘Highlights of 2010’
Physics in Medicine and Biology , Estados Unidos
2011 Nominee for President of MR of Cancer Study Group, ISMRM
International Society for Magnetic Resonance in Medicine, Estados Unidos
2010 Nominee for President of MR of Cancer Study Group, ISMRM
International Society for Magnetic Resonance in Medicine, Estados Unidos
2006 Finalist, Young Investigator competition in cancer imaging, 14th Annual ISMRM meeting
International Society for Magnetic Resonance in Medicine, Estados Unidos