Artigo em revista |
- DeBarry, Jeremy D.; Nural, Mustafa V.; Pakala, Suman B.; Nayak, Vishal; Warrenfeltz, Susanne; Humphrey, Jay; Lapp, Stacey
A.; et al. "MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques".
Scientific Data 9 1 (2022): http://dx.doi.org/10.1038/s41597-022-01755-y.
10.1038/s41597-022-01755-y
- Adhikari, Bandita; Scindia, Yogesh; Sordo Vieira, Luis; de Assis Lopes Ribeiro, Henrique; Masison, Joseph; Yang, Ning; Luis
L. Fonseca; et al. Autor correspondente: Laubenbacher, Reinhard. "Computational Modeling of Macrophage Iron Sequestration
during Host Defense against Aspergillus". mSphere e00074-22 (2022): http://dx.doi.org/10.1128/msphere.00074-22.
10.1128/msphere.00074-22
- Peterson, Mariko S.; Joyner, Chester J.; Lapp, Stacey A.; Brady, Jessica A.; Wood, Jennifer S.; Cabrera-Mora, Monica; Saney,
Celia L.; et al. "Plasmodium knowlesi Cytoadhesion Involves SICA Variant Proteins". Frontiers in Cellular and Infection
Microbiology 12 (2022): http://dx.doi.org/10.3389/fcimb.2022.888496.
Publicado • 10.3389/fcimb.2022.888496
- Peterson, Mariko S.; Joyner, Chester J.; Brady, Jessica A.; Wood, Jennifer S.; Cabrera-Mora, Monica; Saney, Celia L.; Fonseca,
Luis L.; et al. "Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi". Malaria Journal 20 1
(2021): 486. http://dx.doi.org/10.1186/s12936-021-03925-6.
10.1186/s12936-021-03925-6
- Gupta, Anuj; Styczynski, Mark P.; Galinski, Mary R.; Voit, Eberhard O.; Luis L. Fonseca. "Dramatic transcriptomic differences
in Macaca mulatta and Macaca fascicularis with Plasmodium knowlesi infections". (2021):
Publicado • 10.1038/s41598-021-98024-6
- Dalvi-Garcia, Felipe; Fonseca, Luis L.; Vasconcelos, Ana Tereza R.; Hedin-Pereira, Cecilia; Voit, Eberhard O.. "A model of
dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression". PLOS Computational Biology
17 5 (2021): e1008956. http://dx.doi.org/10.1371/journal.pcbi.1008956.
Publicado • 10.1371/journal.pcbi.1008956
- Olivença, Daniel V.; Fonseca, Luis L.; Voit, Eberhard O.; Pinto, Francisco R.. "Thickness of the airway surface liquid layer
in the lung is affected in cystic fibrosis by compromised synergistic regulation of the ENaC ion channel". Journal of The
Royal Society Interface 16 157 (2019): 20190187. http://dx.doi.org/10.1098/rsif.2019.0187.
Acesso aberto • Publicado • 10.1098/rsif.2019.0187
- Faraji, Mojdeh; Fonseca, Luis L; Escamilla-Treviño, Luis; Barros-Rios, Jaime; Engle, Nancy; Yang, Zamin K.; Tschaplinski,
Timothy J.; Dixon, Richard A.; Voit, Eberhard O. "Mathematical models of lignin biosynthesis". Biotechnology for Biofuels
11 1 (2018): 34-34.
Publicado • 10.1186/s13068-018-1028-9
- Olivença, Daniel V.; Uliyakina, Inna; Fonseca, Luis L; Amaral, Margarida D.; Voit, Eberhard O; Pinto, Francisco R.. "A Mathematical
Model of the Phosphoinositide Pathway". Scientific Reports 8 1 (2018): 3904-0.
Publicado • 10.1038/s41598-018-22226-8
- M. Downs, Diana; V. Bazurto, Jannell; Gupta, Anuj; L. Fonseca, Luis; O. Voit, Eberhard. "The three-legged stool of understanding
metabolism: integrating metabolomics with biochemical genetics and computational modeling". AIMS Microbiology 4 2 (2018):
289-303.
Publicado • 10.3934/microbiol.2018.2.289
- Faraji, Mojdeh; Fonseca, Luis L; Escamilla-Treviño, Luis; Barros-Rios, Jaime; Engle, Nancy L.; Yang, Zamin K.; Tschaplinski,
Timothy J.; Dixon, Richard A.; Voit, Eberhard O. "A dynamic model of lignin biosynthesis in Brachypodium distachyon". Biotechnology
for Biofuels 11 1 (2018): 253-253.
Publicado • 10.1186/s13068-018-1241-6
- Fonseca, Luis L; Joyner, Chester J.; Saney, Celia L.; Moreno, Alberto; Barnwell, John W.; Galinski, Mary R.; Voit, Eberhard
O. "Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi". Malaria Journal
17 1 (2018): 410-0.
Publicado • 10.1186/s12936-018-2560-6
- Galinski MR; Lapp SA; Peterson MS; Ay F; Joyner CJ; LE Roch KG; Fonseca LL; Voit EO; MAHPIC CONSORTIUM. "Plasmodium knowlesi:
a superb in vivo nonhuman primate model of antigenic variation in malaria.". Parasitology 0 0 (2017): 1-16. http://europepmc.org/abstract/med/28712361.
Publicado • 10.1017/S0031182017001135
- Fonseca, Luis L; Joyner, Chester J.; Galinski, Mary R.; Voit, Eberhard O. "A model of Plasmodium vivax concealment based on
Plasmodium cynomolgi infections in Macaca mulatta". Malaria Journal 16 1 (2017): 375-0.
Publicado • 10.1186/s12936-017-2008-4
- Tang, Yan; Gupta, Anuj; Garimalla, Swetha; Galinski, Mary R.; Styczynski, Mark P.; Fonseca, Luis L; Voit, Eberhard O. "Metabolic
modeling helps interpret Transcriptomic changes during malaria". Biochimica et Biophysica Acta (BBA) - Molecular Basis
of Disease 0 (2017): 0-0.
Publicado • 10.1016/j.bbadis.2017.10.023
- Fonseca, Luis L; Alezi, Harnel S.; Moreno, Alberto; Barnwell, John W.; Galinski, Mary R.; Voit, Eberhard O. "Quantifying the
removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection". Malaria Journal 15 1 (2016):
410-425.
Publicado • 10.1186/s12936-016-1465-5
- Phuongan Dam; Luis L Fonseca; Konstantinos T Konstantinidis; Eberhard O Voit. "Dynamic models of the complex microbial metapopulation
of lake mendota". npj Systems Biology and Applications 2 0 (2016): 16007-16. https://doi.org/10.1038%2Fnpjsba.2016.7.
Publicado • 10.1038/npjsba.2016.7
- Chen, Po-Wei; Fonseca, Luis L; Hannun, Yusuf A.; Voit, Eberhard O; Witt, Stephan Neil. "Analysis of the Involvement of Different
Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast". PLOS ONE 11 1 (2016): e0146839-e0146839.
Publicado • 10.1371/journal.pone.0146839
- Dolatshahi, Sepideh; Fonseca, Luis L.; Voit, Eberhard O.. "New insights into the complex regulation of the glycolytic pathway
in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model". Molecular Biosystems 12 1 (2016):
23-36.
Publicado • 10.1039/c5mb00331h
- Dolatshahi, Sepideh; Fonseca, Luis L; Voit, Eberhard O. "New insights into the complex regulation of the glycolytic pathway
in Lactococcus lactis. II. Inference of the precisely timed control system regulating glycolysis". Mol. BioSyst. 12
1 (2016): 37-47.
Publicado • 10.1039/c5mb00726g
- Fonseca, Luis L; Voit, Eberhard O. "Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria
infection". Mathematical Biosciences 270 1 (2015): 224-236.
Publicado • 10.1016/j.mbs.2015.08.020
- Faraji, Mojdeh; Fonseca, Luis L; Escamilla-Treviño, Luis; Dixon, Richard A.; Voit, Eberhard O. "Computational inference of
the structure and regulation of the lignin pathway in Panicum virgatum". Biotechnology for Biofuels 8 1 (2015): 151-0.
Publicado • 10.1186/s13068-015-0334-8
- Chen, Po-Wei; Fonseca, Luis L; Hannun, Yusuf A.; Voit, Eberhard O; Stelling, Jorg. "Dynamics of the Heat Stress Response of
Ceramides with Different Fatty-Acyl Chain Lengths in Baker’s Yeast". PLOS Computational Biology 11 8 (2015): e1004373-e1004373.
Publicado • 10.1371/journal.pcbi.1004373
- Radoš D; Turner DL; Fonseca LL; Carvalho AL; Blombach B; Eikmanns BJ; Neves AR; Santos H. "Carbon flux analysis by 13C nuclear
magnetic resonance to determine the effect of CO2 on anaerobic succinate production by Corynebacterium glutamicum.". (2014):
http://europepmc.org/abstract/med/24610842.
10.1128/AEM.04189-13
- Faria, N.T.; Santos, M.V.; Fernandes, P.; Fonseca, L.L.; Fonseca, C.; Ferreira, F.C.. "Production of glycolipid biosurfactants,
mannosylerythritol lipids, from pentoses and d-glucose/d-xylose mixtures by Pseudozyma yeast strains". Process Biochemistry
49 11 (2014): 1790-1799. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908267677&partnerID=MN8TOARS.
10.1016/j.procbio.2014.08.004
- Carvalho, Ana Lúcia; Turner, David L.; Fonseca, Luís L.; Solopova, Ana; Catarino, Teresa; Kuipers, Oscar P.; Voit, Eberhard
O; et al. "Metabolic and Transcriptional Analysis of Acid Stress in Lactococcus lactis, with a Focus on the Kinetics of Lactic
Acid Pools". PLoS ONE 8 7 (2013): e68470-e68470.
Publicado • 10.1371/journal.pone.0068470
- Chen, Po-Wei; Fonseca, Luis L.; Hannun, Yusuf A.; Voit, Eberhard O.; Stelling, Jorg. "Coordination of Rapid Sphingolipid Responses
to Heat Stress in Yeast". PLoS Computational Biology 9 5 (2013): e1003078-e1.
Publicado • 10.1371/journal.pcbi.1003078
- Fonseca, Carla P.; Fonseca, LuÃs L.; Montezinho, Liliana P.; Alves, Paula M.; Santos, Helena; Castro, M. Margarida C. A.;
Geraldes, Carlos F. G. C.. "23Na multiple quantum filtered NMR characterisation of Na+ binding and dynamics in animal cells:
a comparative study and effect of Na+/Li+ competition". European Biophysics Journal 42 7 (2013): 503-519. http://dx.doi.org/10.1007/s00249-013-0899-8.
Publicado • 10.1007/s00249-013-0899-8
- Fonseca, Luis L.; Chen, Po-Wei; Voit, Eberhard O.. "Canonical Modeling of the Multi-Scale Regulation of the Heat Stress Response
in Yeast". Metabolites 2 4 (2012): 221-241. http://dx.doi.org/10.3390/metabo2010221.
Publicado • 10.3390/metabo2010221
- Fonseca, Luis L.; Sánchez, Claudia; Santos, Helena; Voit, Eberhard O.. "Complex coordination of multi-scale cellular responses
to environmental stress". Molecular BioSystems 7 3 (2011): 731-731. http://dx.doi.org/10.1039/c0mb00102c.
Publicado • 10.1039/c0mb00102c
- Fonseca, César; Olofsson, Kim; Ferreira, Carla; Runquist, David; Fonseca, Luís L.; Hahn-Hägerdal, Bärbel; Lidén, Gunnar. "The
glucose/xylose facilitator Gxf1 from Candida intermedia expressed in a xylose-fermenting industrial strain of Saccharomyces
cerevisiae increases xylose uptake in SSCF of wheat straw". Enzyme and Microbial Technology 48 6-7 (2011): 518-525.
Publicado • 10.1016/j.enzmictec.2011.02.010
- Ndukum, Juliet; Fonseca, LuÃs L.; Santos, Helena; Voit, Eberhard O; Datta, Susmita. "Statistical Inference Methods for Sparse
Biological Time Series Data". BMC Systems Biology 5 1 (2011): 57-57. http://dx.doi.org/10.1186/1752-0509-5-57.
Publicado • 10.1186/1752-0509-5-57
- Voit, E.O.; Goel, G.; Chou, I.-C.; Fonseca, L.L.. "Estimation of metabolic pathway systems from different data sources". IET
Systems Biology 3 6 (2009): 513-513. http://dx.doi.org/10.1049/iet-syb.2008.0180.
Publicado • 10.1049/iet-syb.2008.0180
- Castro, Rute; Neves, Ana R.; Fonseca, LuÃs L.; Pool, Wietske A.; Kok, Jan; Kuipers, Oscar P.; Santos, Helena. "Characterization
of the individual glucose uptake systems of Lactococcus lactis /: mannose-PTS, cellobiose-PTS and the novel GlcU
permease". Molecular Microbiology 71 3 (2009): 795-806. http://dx.doi.org/10.1111/j.1365-2958.2008.06564.x.
Publicado • 10.1111/j.1365-2958.2008.06564.x
- Cerdán, Sebastián; Sierra, Alejandra; Fonseca, Luis L; Ballesteros, Paloma; Rodrigues, Tiago B.. "The turnover of the H3 deuterons
from (2- 13 C) glutamate and (2- 13 C) glutamine reveals subcellular trafficking
in the brain of partially deuterated rats". Journal of Neurochemistry 109 S1 (2009): 63-72.
Publicado • 10.1111/j.1471-4159.2009.05962.x
- C. Jorge; L. L. FONSECA; W. Boos; H. SANTOS. "Role of periplasmic trehalase in uptake of trehalose by the thermophilic bacterium
Rhodothermus marinus". JOURNAL OF BACTERIOLOGY 74 6 (2008): 1871-1878.
Publicado • 10.1128/JB.01616-07
- Ramírez, Belén G.; Rodrigues, Tiago B.; Violante, Inês R.; Cruz, Fátima; Fonseca, Luís L.; Ballesteros, Paloma; Castro, M.
Margarida C.A.; García-Martín, María L.; Cerdán, Sebastián. "Kinetic properties of the redox switch/redox coupling mechanism
as determined in primary cultures of cortical neurons and astrocytes from rat brain". Journal of Neuroscience Research
85 15 (2007): 3244-3253.
Publicado • 10.1002/jnr.21386
- Cerdán, Sebastián; Rodrigues, Tiago B.; Sierra, Alejandra; Benito, Marina; Fonseca, Luis L; Fonseca, Carla P.; García-Martín,
María L.. "The redox switch/redox coupling hypothesis". Neurochemistry International 48 6-7 (2006): 523-530.
Publicado • 10.1016/j.neuint.2005.12.036
- Fonseca, Luís L.; Monteiro, Miguel A.R.; Alves, Paula M.; Carrondo, Manuel J.T.; Santos, Helena. "Cultures of rat astrocytes
challenged with a steady supply of glutamate: New model to study flux distribution in the glutamate-glutamine cycle". Glia
51 4 (2005): 286-296.
Publicado • 10.1002/glia.20209
- Santos, S¿nia S¿; Fonseca, Lu¿s L.; Monteiro, Miguel A.R.; Carrondo, Manuel J.T.; Alves, Paula M.. "Culturing primary brain
astrocytes under a fully controlled environment in a novel bioreactor". Journal of Neuroscience Research 79 1-2 (2005):
26-32.
Publicado • 10.1002/jnr.20279
- Fonseca, Luis L.; Alves, Paula M.; Carrondo, Manuel J.T.; Santos, Helena. "Effect of ethanol on the metabolism of primary
astrocytes studied by13C- and31P-NMR spectroscopy". Journal of Neuroscience Research 66 5 (2001): 803-811. http://dx.doi.org/10.1002/jnr.10039.
Publicado • 10.1002/jnr.10039
- Alves, P.M.; Fonseca, L.L.; Peixoto, C.C.; Almeida, A.C.; Carrondo, M.J.T.; Santos, H.. "NMR studies on energy metabolism
of immobilized primary neurons and astrocytes during hypoxia, ischemia and hypoglycemia". NMR in Biomedicine 13 8 (2000):
438-448. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034493853&partnerID=MN8TOARS.
10.1002/nbm.665
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