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Gianmaria Califano is a Postdoctoral Researcher at the Department of Plant Biology at the University of Lisbon (since 2022). He graduated in Marine Biology from the University Federico II of Naples, Italy, in 2008, and in 2011, he earned an M.Sc. degree in Marine Biodiversity and Conservation through the Erasmus Mundus program, which involved three European universities: Faro (Portugal), Oviedo (Spain), and Gent (Belgium). Following his role as a research technician on FCT-funded projects at the Centre of Marine Sciences (CCMAR), he joined the Marie Sklodowska-Curie Ph.D. program in Germany at Friedrich Schiller University Jena within the Chemistry department, obtaining his degree in 2022. In the past two years, Califano has served as Principal Investigator (PI) and Co-Principal Investigator (Co-PI) on two one-year projects funded by BioISI's internal call. He has co-authored 18 original scientific articles and two book chapters, achieving an h-index of 12 and an i10-index of 13. Califano has participated in eight communications, including four oral presentations at international conferences, workshops, and university open days. He has supervised two master's students and taught several laboratory classes during his Ph.D. and current position. His research focuses on the diversity and function of microorganisms in both natural and engineered ecosystems, emphasizing organism interactions through omics and classical approaches. This work is connected to host-ecosystem health and climate change, contributing to the development of sustainable biotechnological solutions.
Identification

Personal identification

Full name
Gianmaria Califano

Citation names

  • Califano, Gianmaria

Author identifiers

Ciência ID
5B13-85E1-8549
ORCID iD
0000-0003-1868-3738

Email addresses

  • gcalifano@ciencias.ulisboa.pt (Professional)

Knowledge fields

  • Natural sciences - Biological Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese Advanced (C1) Advanced (C1) Upper intermediate (B2) Proficiency (C2) Upper intermediate (B2)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Upper intermediate (B2)
Italian (Mother tongue)
Education
Degree Classification
2015/07/20 - 2022/01/26
Concluded
Faculty of Chemistry and Earth Sciences (Doctor of Philosophy)
Major in Molecular Biology
Friedrich-Schiller-Universität Jena Institut für Geowissenschaften, Germany
"Inter-kingdom interactions shapes macroalga Ulva holobiont: studies on algal growth and morphogenesis promoting factors (phytohormones and thallusin) and algal associated microbial community" (THESIS/DISSERTATION)
Cum Lauda
2009/09/10 - 2011/09/23
Concluded
Marine Biology and Conservation (Mestrado)
Major in Marine Biology and Ecology
Universidade do Algarve, Portugal
"Seagrass and Seaweed competition for nitrogen uptake" (THESIS/DISSERTATION)
Distinction
2005/09/10 - 2008/12/18
Concluded
Biologia delle Produzioni marine (Bachelor)
Major in Marine Biology
Università degli Studi di Napoli Federico II, Italy
"Variabilità di alcuni descrittori di Posidonia oceanica a diverse scale spaziali." (THESIS/DISSERTATION)
109/110
Affiliation

Science

Category
Host institution
Employer
2022/10/03 - Current Postdoc (Research) FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal
Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
2011/11/01 - 2015/07/10 Contracted Researcher (Research) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
Projects

Grant

Designation Funders
2022/11/02 - Current MiDiVine (Innovative Approaches Promoting Functional Microbial Diversity for a Sustainable Grapevine Health and Productivity in Vineyard Systems of Mediterranean Areas)
Post-doc
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
ERA-LEARN
Ongoing
2015/06/16 - 2018/12/14 Algal Microbiome: Friends or Foes (ALFF)
MSCA- ITN-2014-ETN - 642575
PhD Student Fellow
EXCELLENT SCIENCE - Marie Sklodowska-Curie Actions
Concluded

Contract

Designation Funders
2024/02/01 - 2025/01/31 Wine Waste Wisdom: Shaping Innovative Antimicrobial Polymers from Wine Industry Byproducts
P0.9A
Co-Principal Investigator (Co-PI)
Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas
Ongoing
2022/11/01 - 2024/03/01 Assessment of melatonin as a priming agent against fruit decay due to fungal infections in table grapes
Internal-Project
Principal investigator
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas
Ongoing
2023/01/10 - 2024/01/09 Microdrygrape. Seeking functional microbiome by assessing impact of water availability in grapevine health, physiological plasticity, and associated soil microbial communities
2632FG
Post-doc
Universidade de Lisboa, Faculdade de Ciências, Portugal
Universidade de Lisboa, Faculdade de Ciências
Ongoing
2011/10/10 - 2014/11/30 Waterborne (hydrophilic) Seaweed metabolites as a green solution for Antimicrobial Therapy in Aquaculture (SATA)
PTDC/MAR/112792/2009
Research Fellow
Centro de Ciências do Mar, Portugal
Associação para a Inovação e Desenvolvimento da FCT
Concluded

Other

Designation Funders
2023/04/15 - Current Fruit tree Crop REsponses to Water deficit and decision support Systems applications (FruitCREWS)
COST Action CA21142
Post-doc
Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
European Union
Ongoing
2015/06/15 - 2019/03/22 Cost Action. Advancing knowledge on seaweed growth and development (Phycomorph)
Cost Action - 096/14
Researcher
2013/10/07 - 2013/11/20 Effects of elevated CO2 from volcanic vents on the trophic structure of seagrass meadows
SZN#2760/96
Researcher
Stazione Zoologica Anton Dohrn Napoli, Italy

Centro de Ciências do Mar, Portugal

Università degli Studi di Palermo, Italy
Concluded
Outputs

Publications

Book chapter
  1. Califano, Gianmaria; Wichard, Thomas. "Preparation of axenic cultures in Ulva (Chlorophyta)". In Protocols for Macroalgae Research, 159-171. 2018.
  2. Kuhlisch, Konstanze; Califano, Gianmaria; Wichard, Thomas; Pohnert, Georg. "Metabolomics of intra- and extracellular metabolites from micro- and macroalgae using GC-MS and LC-MS". In Protocols for Macroalgae Research, 279-300. 2018.
    Published
Journal article
  1. KleinJan, Hetty; Frioux, Clémence; Califano, Gianmaria; Aite, Méziane; Fremy, Enora; Karimi, Elham; Corre, Erwan; et al. "Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation". Molecular Ecology 00 (2022): 1-21. http://dx.doi.org/10.1111/mec.16766.
    Open access • Published • 10.1111/mec.16766
  2. Sanches-Fernandes, Gracinda M. M.; Califano, Gianmaria; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Pousão-Ferreira, Pedro; Mata, Leonardo; Costa, Rodrigo. "Effects of live feed manipulation with algal-derived antimicrobial metabolites on fish larvae microbiome assembly: A molecular-based assessment". Aquaculture Research 53 3 (2021): 1062-1083. http://dx.doi.org/10.1111/are.15648.
    10.1111/are.15648
  3. Sanches-Fernandes, Gracinda M. M.; Califano, Gianmaria; Keller-Costa, Tina; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Pousão-Ferreira, Pedro; Mata, Leonardo; Costa, Rodrigo. "Draft Genome Sequence of Vibrio jasicida 20LP, an Opportunistic Bacterium Isolated from Fish Larvae". Microbiology Resource Announcements 10 44 (2021): http://dx.doi.org/10.1128/mra.00813-21.
    10.1128/mra.00813-21
  4. Nahor, Omri; Morales-Reyes, Cristina F.; Califano, Gianmaria; Wichard, Thomas; Golberg, Alexander; Israel, Álvaro. "Flow cytometric measurements as a proxy for sporulation intensity in the cultured macroalga Ulva (Chlorophyta)". Botanica Marina 64 2 (2021): 83-92. http://dx.doi.org/10.1515/bot-2020-0050.
    10.1515/bot-2020-0050
  5. Sanches-Fernandes, Gracinda M. M.; Califano, Gianmaria; Keller-Costa, Tina; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Pousão-Ferreira, Pedro; Mata, Leonardo; Costa, Rodrigo. "Draft genome sequence of Vibrio chagasii 18LP, isolated from Gilthead Seabream (Sparus aurata) larvae reared in aquaculture". (2021): http://hdl.handle.net/10400.1/17237.
    10.1128/MRA.00658-21
  6. Gracinda, M; Sanches, F; Califano, Gianmaria; Keller-Costa, Tina; Castanho, Sara; Soares, Florbela; Ribeiro, L; Pedro Pousão-Ferreira. Corresponding author: Gracinda, M. "Draft Genome Sequence of Vibrio jasicida 20LP, an Opportunistic Bacterium Isolated from Fish Larvae". Microbiology Resource Announcements (2021):
  7. Gracinda M. M. Sanches-Fernandes; Califano, Gianmaria; Keller-Costa, Tina; Sara Castanho; Soares, Florbela; Laura Ribeiro; Pedro Pousão-Ferreira; Mata, L; Costa, R. Corresponding author: Gracinda M. M. Sanches-Fernandes. "Draft Genome Sequence of Vibrio chagasii 18LP, Isolated from Gilthead Seabream (Sparus aurata) Larvae Reared in Aquaculture". Genome Sequences (2021):
  8. MarkPolikovsky; Califano, Gianmaria; NicoDunger; ThomasWichard; AlexanderGolberg. "Engineering bacteria-seaweed symbioses for modulating the photosynthate content of Ulva (Chlorophyta): Significant for the feedstock of bioethanol production". Algal Research 49 (2020): 101945-101945. http://dx.doi.org/10.1016/j.algal.2020.101945.
    10.1016/j.algal.2020.101945
  9. Califano, Gianmaria; Kwantes, Michiel; Abreu, Maria Helena; Costa, Rodrigo; Wichard, Thomas. "Cultivating the Macroalgal Holobiont: Effects of Integrated Multi-Trophic Aquaculture on the Microbiome of Ulva rigida (Chlorophyta)". Frontiers in Marine Science 7 (2020): http://dx.doi.org/10.3389/fmars.2020.00052.
    10.3389/fmars.2020.00052
  10. Alsufyani, Taghreed; Califano, Gianmaria; Deicke, Michael; Grueneberg, Jan; Weiss, Anne; Engelen, Aschwin H; Kwantes, Michiel; et al. "Macroalgal-bacterial interactions: identification and role of thallusin in morphogenesis of the seaweed Ulva (Chlorophyta)". Journal of Experimental Botany 71 11 (2020): 3340-3349. http://dx.doi.org/10.1093/jxb/eraa066.
    10.1093/jxb/eraa066
  11. Martínez-Crego, Begoña; Vizzini, Salvatrice; Califano, Gianmaria; Massa-Gallucci, Alexia; Andolina, Cristina; Gambi, Maria Cristina; Santos, Rui. "Resistance of seagrass habitats to ocean acidification via altered interactions in a tri-trophic chain". Scientific Reports 10 1 (2020): http://hdl.handle.net/10400.1/14550.
    10.1038/s41598-020-61753-1
  12. Ghaderiardakani, F; Califano, G; Mohr, JF; Abreu, MH; Coates, JC; Wichard, T. "Analysis of algal growth- and morphogenesis- promoting factors in an integrated multi-trophic aquaculture system for farming Ulva spp.". Aquaculture Environment Interactions 11 (2019): 375-391. http://dx.doi.org/10.3354/aei00319.
    10.3354/aei00319
  13. Helfrich, Eric J. N.; Ueoka, Reiko; Dolev, Alon; Rust, Michael; Meoded, Roy A.; Bhushan, Agneya; Califano, Gianmaria; et al. "Automated structure prediction of trans-acyltransferase polyketide synthase products". Nature Chemical Biology 15 8 (2019): 813-821. http://dx.doi.org/10.1038/s41589-019-0313-7.
    10.1038/s41589-019-0313-7
  14. De Clerck, Olivier; Kao, Shu-Min; Bogaert, Kenny A.; Blomme, Jonas; Foflonker, Fatima; Kwantes, Michiel; Vancaester, Emmelien; et al. "Insights into the Evolution of Multicellularity from the Sea Lettuce Genome". Current Biology 28 18 (2018): 2921-2933.e5. http://dx.doi.org/10.1016/j.cub.2018.08.015.
    10.1016/j.cub.2018.08.015
  15. Califano, Gianmaria; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Cox, C. J.; Mata, Leonardo; Costa, Rodrigo. "Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.00204.
    10.3389/fmicb.2017.00204
  16. Castanho, Sara; Califano, Gianmaria; Soares, F.; Costa, Rodrigo; Mata, L.; Pousao-Ferreira, P.; Ribeiro, L.; Gianmaria Califano. "The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae". Fish Physiology and Biochemistry 43 4 (2017): 1043-1054. http://hdl.handle.net/10400.1/13056.
    10.1007/s10695-017-0351-6
  17. Nogueira, Patrícia; Gambi, Maria Cristina; Vizzini, Salvatrice; Califano, Gianmaria; Tavares, Ana Mafalda; Santos, Rui; Martinez-Cruz, Begona. "Altered epiphyte community and sea urchin diet in Posidonia oceanica meadows in the vicinity of volcanic CO2 vents". Marine Environmental Research 127 (2017): 102-111. http://hdl.handle.net/10400.1/13110.
    10.1016/j.marenvres.2017.04.002
  18. Sara Castanho; Califano, Gianmaria; Soares, Florbela; Costa, R.; Mata, L.; Pedro Pousão-Ferreira; Laura Ribeiro. Corresponding author: Sara Castanho. "with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae.". Fish Physiology and Biochemestry (2017):
  19. Califano, Gianmaria; Sara Castanho; Soares, Florbela; Laura Ribeiro; Cox, C.J.; Mata, L.; Costa, R.. Corresponding author: Califano, Gianmaria. "Highly specific bacterial communities cooperatively shape the onset of the gilthead seabream (Sparus aurata) symbiotic consortium in fish larviculture. Hatchery.". Front. Microbiol (2017):
  20. Franco, Telma; Califano, Gianmaria; Gonçalves, Ana C. S.; Cucio, Catarina; Costa, Rodrigo. "Draft genome sequence of Vibrio sp. strain Evh12, a bacterium retrieved from the gorgonian coral Eunicella verrucosa.". (2016): http://hdl.handle.net/10400.1/9773.
    10.1128/genomeA.01729-15
  21. Ana C S Gonçalves; Telma Franco; Califano, Gianmaria; Scot E Dowd; Georg Pohnert; Costa, Rodrigo. "Draft Genome Sequence of Vibrio sp. Strain Vb278, an Antagonistic Bacterium Isolated from the Marine Sponge Sarcotragus spinosulus". Genome Announcements 3 3 (2015): http://dx.doi.org/10.1128/genomea.00521-15.
    10.1128/genomea.00521-15
  22. Califano, Gianmaria; Telma Franco; Ana C S Gonçalves; Sara Castanho; Florbela Soares; Laura Ribeiro; Leonardo Mata; Costa, Rodrigo. "Draft Genome Sequence of Aliivibrio fischeri Strain 5LC, a Bacterium Retrieved from Gilthead Sea Bream (Sparus aurata) Larvae Reared in Aquaculture". Genome Announcements 3 3 (2015): http://dx.doi.org/10.1128/genomea.00593-15.
    10.1128/genomea.00593-15
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/07/09 Drought affects vineyard soil microbiome: approach to select micro-organisms adapted to drought. Open Conference on Grapevine Physiology and Biotechnology
Instituto de Ciencias de la Vid y del Vino (Logroño, Spain)
2023/04/28 Microbiome, a resource for viticulture. Frutos e afins com Ciências
Faculdade de Ciência da Universidade de Lisboa (Lisboa, Portugal)
2023/04/27 Soil Microbiome, A Resource for Viticulture. Outreach event organized from Members of Faculty of Science (Universidade de Lisboa) to promote scientific dissemination and create a meeting point between stakeholders of different sectors . Frutos e afins com Ciências
2018/03/21 The bacterial-derived thallusin molecule is responsible for changes in morphogenesis in the green alga Ulva mutabilis. International Conference on Microbial Communication for Young Scientists (MiCom)
Jena School for Microbial Communication, FSU Jena (Jena, Germany)
2017/09/19 Interactions between Ulva and bacteria: Discovering metabolic pathways under the morphogenetic factor thallusin. 58th Conference of the Czech Phycological Society, Ostrava, Czech Republic.
(Ostrava, Czech Republic)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2022/11/01 - 2023/09/15 Master Thesis for the Master in Microbiology course at the Instituto Técnico de Lisboa. Title: "Effects of abiotic factors on soil microbiome of Vineyards in a global warming-sensitive region using Next Generation Molecular Techniques."
Co-supervisor
Microbiologia (Master)
Universidade de Lisboa, Faculdade de Ciências, Portugal
2017/06/18 - 2018/02/13 Tema: Screening of axenic and xenic Ulva mutabilis tissues and algal associated bacteria for the presence of phytohormones using solid-phase extractions and UHPLC-MS. The purified phytohormones standards were further tested in bioassays to test their activity in the algal growth.
Co-supervisor
Friedrich-Shiller-University Jena, Germany
2016/12/20 - 2017/10/27 Investigations of phytohormones production of the macroalga Ulva mutabilis using LC-ESI-MS. The master thesis focused on the identification and quantification of phytohormones in the green macroalgae Ulva mutabilis and in its associated bacteria under xenic and axenic conditions in order to understand their role in the morphogenesis of Ulva.
Co-supervisor
Analitical Chemistry (Master)
Friedrich Schiller Universität Jena Chemisch Geowissenschaftliche Fakultät, Germany

Event organisation

Event name
Type of event (Role)
Institution / Organization
2023/04/28 - 2023/04/28 Frutos e Afins com Ciências. Collaboration in the organization of the outreach event dedicated to scientific dissemination of research on crops, fruits and plants to general public (students included) and create aggregation moments to strengthen interactions between University and private companies, which had the chance and space to show their work/products/services. (2023/04/28 - 2023/04/28)
Other (Other)
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2017/09/11 - 2017/09/15 Organization and supervision of international COST Action workshop "Crossing the kingdoms: macroalgae - bacteria interactions promoting algal growth and development". The workshop covered experimental strategies, metabolites extraction for endo- and exo-metabolomics using GC-MS or LC-MS, and data analysis to obtain bio markers. (2017/09/11 - 2017/09/15)
Workshop (Co-organisor)
Friedrich Schiller Universität Jena Chemisch Geowissenschaftliche Fakultät, Germany
2016/09/19 - 2016/09/23 Organization and students supervision of international Marie Curie ITN ALFF workshop "Deciphering symbiotic interactions with metabolomics", FSU Jena, Germany. (2016/09/19 - 2016/09/23)
Workshop (Co-organisor)
Friedrich Schiller Universität Jena Chemisch Geowissenschaftliche Fakultät, Germany

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2023/10/06 - 2024/01/23 Estudo Orientado em Biologia Celular e Biotecnologia. Students integrate a research project to experience what is to be part of a research team and how to proceed through a research project. Estudo Orientado em Biologia Celular e Biotecnologia Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2023/02/16 - 2023/06/26 Estudo Orientado em Biologia Celular e Biotecnologia. Students integrate a research project to experience what is to be part of a research team and how to proceed through a research project. Estudo Orientado em Biologia Celular e Biotecnologia (Licenciatura) Universidade de Lisboa, Faculdade de Ciências, Portugal
2020/04/19 - 2020/04/19 Two lectures in the Course Units: Microbiomes, and Microbiomes and Metagenomics. Show the case of microbial ecology study of bacterial and archaeal community in the planktonic form and associated to macroalgal tissues grown under aquaculture conditions. Taught the analytical workflow for metabarcoding studies: from Illumina raw reads to publishable graphs with statistical tests to answer study questions and set new hypothesis. Microbiomes and Metagenomics (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/09/15 - 2017/02/10 Analytical techniques in Chemistry: practical class on GC and GC-MS (Bachelor) Friedrich-Schiller-Universität Jena, Germany
2015/09/15 - 2016/01/23 Analytical techniques in Chemistry: practical class on gel electrophoresis Analytical techniques in Chemistry (Bachelor) Friedrich-Schiller-Universität Jena, Germany

Mentoring / Tutoring

Topic Student name
2015/11/08 - 2016/02/10 Bachelor thesis project: Studying the thallusin effects on the physiology of Ulva mutabilis Maximilian Walter

Scientific expedition

Activity description Institution / Organization
2015/06/19 - 2015/06/23 Ocean Sampling Day is a project to gather ocean data from all over the world in the same day over several years. I participated in the planning and performing of the sampling of water samples from two location of the Algarve coast (inside and outside the Ria Formosa Lagoon) in order to study microbial dark matter and global Nitrogen cycling. Centro de Ciências do Mar, Portugal

Universidade do Algarve - Campus de Gambelas, Portugal
2014/06/18 - 2014/06/23 Ocean Sampling Day. I participated in the planning and performing of the sampling of water samples from two location of the Algarve coast (inside and outside the Ria Formosa Lagoon) in order to study microbial dark matter and global Nitrogen cycling. Centro de Ciências do Mar, Portugal

Universidade do Algarve - Campus de Gambelas, Portugal