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Cledir Santos é Químico pela Universidade Federal Rural de Pernambuco (Brasil, 2002) e Doutor em Química pela Universidade do Porto (Portugal, 2007). Atualmente, é Professor Associado nível A, com contrato permanente, do Departamento de Ciências Químicas e Recursos Naturais da Universidade de La Frontera (UFRO, http://www.ufro.cl/), Temuco, Chile. Foi o fundador e Diretor da Coleção Chilena de Cultivos Tipo-CCCT/UFRO (2015-2019), foi o fundador e é o Diretor do Banco de Recursos microBianos-BRmB da Facultad de Ingeniería y Ciencias UFRO. É Coordenador de Cooperação Internacional do Scientific and Technological Bioresource Nucleus BIOREN-UFRO (www.bioren.cl) e Membro dos Conselhos Executivos da Federação Mundial de Coleções de Culturas (WFCC, http://www.wfcc.info/) e da Federação Latino-Americana de Coleções de Culturas (http://felacc.cinvestav.mx/). Durante a sua carreira profissional tem trabalhado em colaboração com varias instituições de diferentes países. Sua área de pesquisa é a Química de Fungos, sendo as principais linhas de investigação o estudo de micotoxinas em produtos de origem agroalimentar e o impacto desses metabolitos na saúde humana; novos biofungicidas para controlar fungos patógenos; a quimiotaxonomía de fungos por métodos de espectrometria de massa e os métodos de preservação de fungos a longo prazo. Foi professor orientador de mais de 20 estudiantes internacionales de doutorado, de mestrado e de licenciatura. Atualmente orienta 2 teses de doutoramento e 1 dissertação de mestrado. Publicou mais 70 trabalhos como artigos em revistas indexadas ou como capítulos de livros, e apresentou mais de 20 conferências como conferencista convidado em congressos nacionais e internacionais. Cledir Santos é professor dos Programas de "Doctorado en Ciencias de Recursos Naturales" e de "Doctorado en Ciencias Mención Biología Celular y Molecular Aplicada" da UFRO e é professor externo permanente dos seguintes Programas de Pós-graduação brasileiros: Microbiologia Agrícola (Universidade Federal de Lavras), Biologia de Fungos (Universidade Federal de Pernambuco) e de Agronomia Tropical (Universidade Federal do Amazonas). Também é Membro Integrado do Centro de Engenharia Biológica da Universidade do Minho (Portugal). Atualmente é IP de 3 projetos de investigação, financiados por agencias nacionais e internacionais de fomento, contabilizando um financiamento total ao redor de meio milhão de euros (2021-2026).
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Identification

Personal identification

Full name
Cledir Santos

Citation names

  • Santos, Cledir

Author identifiers

Ciência ID
731D-45D8-8A8F
ORCID iD
0000-0003-4681-0941
Scopus Author Id
8620996200

Telephones

Telephone
  • (+56) 452596726 (Professional)

Addresses

  • Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Av. Francisco Salazar, Francisco Salazar 01145, 4811230, Temuco, Temuco, Chile (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Mycology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
2007
Concluded
 Química (Doutoramento)
Major in Sem especialidade
Universidade do Porto Faculdade de Ciências, Portugal
"Síntese e Reactividade de Potenciais Pró-fármacos Dipeptídicos Activados por Ciclização Intramolecular" (THESIS/DISSERTATION)
Outputs

Publications

Book
  1. Oliveira, L. A.; Fernandes, O. C.; Jesus, M. A.; Bentes, J. L. S.; Andrade, S. L.; Souza, A. Q. L.; Santos, Cledir. Diversidade microbiana da Amazônia. Instituto Nacional de Pesquisas da Amazônia. 2016.
  2. Biological resource centres : closing the gap between science and society. 2012.
Book chapter
  1. Santos, Cledir; Galeno, Paula; Lima-Neto, Reginaldo; Oliveira, Manoel M. E.; Lima, Nelson. "MALDI-TOS MS and its requirements for fungal identification". CABI International, 2021.
  2. Costa, Jéssica; Lima, Nelson; Santos, Cledir. "Chilean pepper: Spoilage fungi and mycotoxins contamination risk in Capsicum products". Instituto Nacional de Pesquisas da Amazônia, 2019.
  3. Santos, Cledir; Francisco, Elaine; Mazza, Mariana; Padovan, Ana Carolina B.; Colombo, Arnaldo; Lima, Nelson. "Impact of MALDI-TOF MS in clinical mycology: progress and barriers in diagnostics". John Wiley and Sons, 2016.
    10.1002/9781118960226.ch9
  4. "Polyphasic Identification and Preservation of Fungal Diversity: Concepts and Applications". 2013.
    10.1007/978-94-007-5931-2_5
Conference paper
  1. Costa, Jéssica; Lima, Nelson; Santos, Cledir. "Mycotoxin contamination in Capsicum pepper and Merkén: Implications for Human Health". 2021.
  2. Costa, Jéssica; Rodriguez, R.; Santos, Carla Isabel Arcanjo; Soares, Célia; Lima, Nelson; Santos, Cledir. "Fungi and mycotoxin contamination in Capsicum pepper and in its derivatives". 2019.
  3. Costa, Jessica; Rodriguez, Rodrigo; Santos, Carla Isabel Arcanjo; Soares, Célia Maria Gonçalves; Lima, Nelson; Santos, Cledir. "Ochratoxigenic mycobiota in chilli Capsicum annuum L. and Chilean Merkén". 2019.
  4. Costa, Jéssica; Rodriguez, R.; Santos, Carla Isabel Arcanjo; Soares, Célia; Lima, Nelson; Santos, Cledir. "Hongos filamentosos y micotoxinas en ají merkén". 2019.
  5. Aranda, Camila; Lima, Nelson; Santos, Cledir. "Overview of potential mycotoxigenic fungi in Chilean buttery cheese". 2019.
  6. Costa, Jéssica; Lima, Nelson; Santos, Cledir. "Spoilage fungi and mycotoxins contamination risk in Capsicum products". 2019.
  7. Costa, Jéssica Souza da; Rodriguez, R.; Santos, Carla Isabel Arcanjo; Soares, Célia; Santos, Cledir; Lima, Nelson. "Mycobiota in Chilean Chili Capsicum annuum L. used for production of Merkén". 2019.
  8. Costa, Jéssica; Rodriguez, Rodrigo; Santos, Carla Isabel Arcanjo; Soares, Célia Maria Gonçalves; Lima, Nelson; Santos, Cledir. "Mycobiota in chilli Capsicum annuum and Chilean merkén". 2019.
  9. Costa, Jéssica; Rodriguez, Rodrigo; Lopez, Sebastián; Battilani, Paola; Lima, Nelson; Santos, Cledir. "Mycobiota in Chilean traditional chilli used for Merkén production". 2018.
  10. Santos, Cledir; Rodriguez, Rodrigo; Simões, Marta Filipa Jesus Freitas; Lima, Nelson. "Polyphasic evaluation of long term preservation on Aspergillus (section Nigri) strains". 2018.
  11. Ouhibi, Salma; Rodriguez, Rodrigo; Decontardi, Simone; Souza, Jéssica; Lopez, Sebastián; Santos, Carla Isabel Arcanjo; Soares, Célia Maria Gonçalves; et al. "Penicillia diversity from food identified polyphasically, including mycotoxin production". 2018.
  12. Ouhibi, Salma; Rodriguez, R.; Decontardi, Simone; Souza, Jéssica; Lopez, Sebastián; Santos, Carla Isabel Arcanjo; Soares, Célia Maria Gonçalves; et al. "Penicillium species identification and new insights on mycotoxins in food commodities (apples, chilli and cheese)". 2018.
  13. Silva, Blenda; Bentes, Jânia; Santos, Carla Isabel Arcanjo; Lima, Nelson; Santos, Cledir. "Diversity of endophytic fungi from guarana seeds (Paullinia cupana) cultivated in Amazonia, Brazil". 2018.
  14. Aranda, Camila; Soto, Isabel; Montesinos, Carlos; Lima, Nelson; Santos, Cledir. "Potential mycotoxingenic fungi in Chilean buttery cheese". 2018.
  15. Córdoba-Fuzga, Angélica; Santos, Carla; Soares, Célia Maria Gonçalves; Gomez, Juan C.; Loiaza-Díaz, Natalia; Mesa-Arango, Ana C.; Refojo, Nicolás; et al. "Polyphasic identification and typing Trichophytum rubrum strains of clinical origin". 2017.
  16. Rodriguez, Rodrigo; Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Aged freeze-dried ampoules of preserved biotechnological important fungi". 2017.
  17. Martins, Maria Rosário; Lima, Nelson; Soares, Célia Maria Gonçalves; Santos, Cledir. "Mucorales strains with biotechnological use: a polyphasic approach identification". 2017.
  18. Soto, Isabel; Rodriguez, Rodrigo; Lopez, Sebastián; Burgos, Nicol; Rocha, Adonis; Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Will fungal strains preserved in culture collections maintain the same biotechnological performance after years of preservation?". 2017.
  19. Santos, Cledir; Lima, Nelson. "Impact of MALDI-TOF MS in Clinical Mycology: Progress and Barriers in Diagnostics". 2017.
  20. Santos, Cledir; Rodriguez, Rodrigo; Soares, Célia Maria Gonçalves; Simões, Marta Filipa Jesus Freitas; Lima, Nelson. "Preserved freeze-dried and aged filamentous fungi of biotechnological importance". 2017.
  21. Martins, Maria Rosário; Dantas, Vânia; Soares, Célia Maria Gonçalves; Santos, Cledir; Lima, Nelson. "Identificação polifásica de Gongronella sp. e de Rhizopus sp. degradadores do fungicida sistémico metalaxil". 2016.
  22. Santos, Cledir; Godoy, Patricio; Lima, Nelson. "Limitations of MALDI-TOF MS in the fungal identification: could LC-MS/MS be a solution?". 2016.
  23. Lima, Nelson; Santos, Cledir. "Public service culture collections of microorganisms: are they important for biotechnology?". 2015.
  24. Santos, Cledir; Klein, Nazareth; Schuenck, Ricardo; Lima, Nelson; Asensi, Marise. "Polyphasic identification of clinical multidrug-resistant bacteria isolated from blood cultures". 2015.
  25. Cisternas, Carla; Santos, Cledir; Lima, Nelson; Rubilar, Olga. "Mechanism of extracellular silver nanoparticles synthesis by Stereum hirsutum and Fusarium oxysporum". 2015.
  26. Oliveira, Helena M. B.; Santos, Cledir; Paterson, R. R. M.; Gusmão, Norma B.; Lima, Nelson. "Filamentous fungi in free water and biofilms from Brazilian drinking water systems". 2015.
  27. Lima, Nelson; Santos, Cledir. "Proteins on microbial identification: past achievements, present state-of-the-art, and future challenges". 2015.
  28. Couto, F.; Santos, Cledir; Souza, T.; Dias, E.; Lima, Nelson; Batista, L.. "Combining analytical methodologies for the identification of Aspergillus section Flavi strains isolated from Brazilian agricultural commodities". 2015.
  29. Martins,M. Rosário; Dantas, Vânia; Soares, Célia Maria Gonçalves; Santos, Cledir; Verkley, Gerard; Lima, Nelson. "Polyphasic identification of a Rhizopus species and a putative novel Gongronella which both degrade the fungicide metalaxyl". 2015.
  30. Silva, P. B. R.; Oliveira, H. M. B.; Santos, Cledir; Gusmão, N. B.; Lima, Nelson. "Filamentous fungi occurrence in free water and biofilms from drinking water storage tanks". 2015.
  31. Santos, Cledir; Francisco, Elaine; Mazza, Mariana; Padovan, Ana Carolina B.; Colombo, Arnaldo; Lima, Nelson. "MALDI-TOF MS and LC MS/MS: New insights for clinical fungal ID". 2015.
  32. Martins, M. Rosário; Santos, Cledir; Pereira, Pablo; Lima, Nelson. "Degradation of the fungicide metalaxyl by Mucorales strains". 2015.
  33. Santos, Cledir; Francisco, Elaine; Mazza, Mariana; Padovan, Ana Carolina B.; Colombo, Arnaldo; Lima, Nelson. "Advances in microbial diagnosis: using mass spectrometry for proteomics and genomics applications". 2015.
  34. Venâncio, Armando; Abrunhosa, Luís; Santos, Cledir; Lima, Nelson. "Tools and strategies to mitigate the effect of mycotoxins". 2014.
  35. Silva, M. C. A.; Santos, Cledir; Lima, Nelson; Bentes, J. L. S.. "Isolation, identification and characterisation of endophytic and pathogenic Colletotrichum guaranicola isolated from guarana leaves (Paullinia cupana var. sorbilis (Mart.) Ducke) in Brazilian Amazon". 2014.
  36. Santos, Cledir; Dias, Disney R.; Lima, Nelson; Schwan, Rosane F.. "Identificação de microrganimos isolados de processos fermentativos: uma abordagem polifásica que inclui a técnica de MALDI-TOF MS". 2014.
  37. Lima, Nelson; Santos, Cledir. "MALDI applications in mycology". 2014.
  38. Santos, Cledir; Lima, Nelson. "MALDI-TOF MS: uma década de experiência na aplicação em microbiologia, sempre olhando o futuro". 2014.
  39. Pinto, Juliana; Gervásio, Ivani; Dias, Disney R.; Dias, Eutásquio; Santos, Cledir; Lima, Nelson; Schwan, Rosane F.. "Coleção de culturas de microbiologia agrícola da UFLA (CCMA-UFLA): da requalificação à certificação baseada na ISO 9001:2008". 2014.
  40. Antunes, André Guimarães Lemos; Santos, Cledir; Smith, David; Lima, Nelson. "Capacity building initiatives, training and education: the EMbaRC experience and beyond". 2013.
  41. Santos, Cledir; Simões, Marta Filipa Jesus Freitas; Ventura, José Aires; Lima, Nelson. "Uso e potencial do MALDI-TOF na detecção de fitopatógenos". 2013.
  42. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Rampitsch, Christof; Lima, Nelson. "Proteomic analysis of Aspergillus niger type strain (MUM 03.01) after accelerated freeze-drying preservation". 2013.
  43. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Desafios locais para a gestão global dos Centros de Recursos Microbiológicos". 2013.
  44. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Implementation of a Quality Management System based on ISO9001:2008 and its importance on culture collections". 2013.
  45. Filho, Magno Rodrigues de Carvalho; Craveiro, Saluana Rocha; Martinhs, Irene; Lima, Nelson; Santos, Cledir; Miller, Robert Neil Gerard; Silva, Joseane Padilha da; Mello, Sueli Corrêa Marques de. "Identification and phylogeny of Trichoderma species by MALDI-TOF analysis and characterization of antagonistic activities against Sclerotinia scleroti". 2013.
  46. Filho, Magno Rodrigues de Carvalho; Craveiro, Saluana Rocha; Martinhs, Irene; Lima, Nelson; Santos, Cledir; Miller, Robert Neil Gerard; Silva, Joseane Padilha da; Mello, Sueli Corrêa Marques de. "Evaluation of inhibitory effects of Trichoderma asperellum metabolites on mycelial growth of Sclerotinia sclerotiorum". 2013.
  47. Antunes, André Guimarães Lemos; Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Microbial resources and applications: preliminary trends and insights for future economic impact estimates". 2013.
  48. Pereira, Leonel João Pais; Dias, Nicolina Marques; Fernandes, Sara; Santos, Cledir; Lima, Nelson. "Antifungal activity against Trichophyton rubrum of inorganic vs. biogenic silver nanoparticles produced by filamentous fungi". 2013.
  49. Antunes, André Guimarães Lemos; Santos, Cledir; Lima, Nelson. "Challenges, approaches and future work in the deep-sea anoxic Brine Lakes of the Red Sea". 2013.
  50. Rodrigues, Paula; Soares, Célia; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Taxonomy of Aspergillus: integration of methods for new and revisited species in section Flavi". 2012.
  51. Maciel, Marília; Santos, Cledir; Lima, Nelson; Souza-Motta, Cristina Maria. "Polyphasic identification of Aspergillus isolates belonging to section Nigri with clinical relevance". 2012.
  52. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Assessment of fungi stability by MALDI-TOF ICMS following preservation on alginate encapsulated samples". 2012.
  53. Santos, Cledir; Rodrigues, Paula; Venâncio, Armando; Lima, Nelson. "MALDI-TOF MS: improved methods for the identification/characterisation and authentication of fungal strains". 2012.
  54. Martins, Margarida Isabel Barros Coelho; Santos, Cledir; Machado, Diana; Maciel, M. H. C.; Lima, Nelson; Santos, Olívia; Rodrigues, Anabela; et al. "Application of MALDI-TOF MS to the identification of dialysis catheters associated microorganisms". 2012.
  55. Lima, M. Sanitá; Santos, Cledir; Lima, Nelson; Polizeli, Maria de Lourdes T. M.. "Identification of Brazilian wild-type isolates of Aspergillus fumigatus based on polyphasic approach including MALDI-TOF MS technique". 2012.
  56. Pereira, Leonel João Pais; Santos, Cledir; Dias, Nicolina Marques; Lima, Nelson. "New insights for identification of clinical isolates of Trichophyton rubrum using MALDI-TOF MS". 2012.
  57. Rodrigues, Paula; Soares, Célia; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Taxonomy of Aspergillus: integration of methods for new and revisited species in section Flavi". 2012.
  58. Soares, Célia Maria Gonçalves; Santos, Cledir; Maciel, Marília; Souza-Motta, Cristina Maria; Lima, Nelson; Venâncio, Armando. "The importance of a quick identification of Aspergillus niger for a proper mycotoxin related diagnosis". 2012.
  59. Passamani, F. R. F.; Terra, M. F.; Couto, F. A.; Bastos, S. C.; Dias, D. R.; Santos, Cledir; Lima, Nelson; Batista, Luís R.. "The filamentous fungi culture collection of the Department of Food Science (CCDCA), Federal University of Lavras, Brazil". 2012.
  60. Cruz, Lidiane Roberta; Lima, Juliana Silva; Fonseca, Julyanna C.; Maciel, Marília H. C.; Venâncio, Armando; Lima, Nelson; Moreira, Keila Aparecida; Santos, Cledir; Souza-Motta, Cristina Maria. "Deteção da produção de ocratoxina A (OTA) por espécies de Penicillium isoladas de solos estocadas na Micoteca URM, Pernambuco, Brasil, através de HPLC". 2012.
  61. Oliveira, M. M. E.; Santos, Cledir; Sampaio, Paula; Pais, Célia; Lima, Nelson; Zancopé-Oliveira, R. M.. "Implementating a methodology for identification of Sporothrix complex isolates by MALDI-TOF ICMS". 2012.
  62. Lima-Neto, Reginaldo Gonçalves; Macêdo, Danielle P.C.; Santos, Cledir; Lima, Nelson; Sampaio, Paula; Pais, Célia; Neves, Rejane Pereira. "Rapid and reliable identification of intact Candida clinical isolates using MALDI-TOF ICMS". 2012.
  63. Siqueira, Virgínia M.; Oliveira, H. M. B.; Santos, Cledir; Paterson, R. R. M.; Gusmão, N. B.; Lima, Nelson. "Filamentous fungi in drinking water in relation to biofilm formation". 2011.
  64. Siqueira, Virgínia M.; Oliveira, Helena; Santos, Cledir; Paterson, R. R. M.; Lima, Nelson; Gusmão, Norma. "Fungos nas águas de consumo: qual a sua relevância?". 2011.
  65. Santos, Cledir; Lima, Nelson. "MALDI-TOF ICMS: avanços na identificação de fungos". 2011.
  66. Elgueta, S.; Santos, Cledir; Lima, Nelson; Diez, M. C.. "Ligninolytic enzymes activities and SEM analysis of fungal inoculum of Anthracophyllum discolour". 2011.
  67. Pereira, Leonel; Dias, Nicolina Marques; Santos, Cledir; Lima, Nelson. "Is MALDI-TOF ICMS able to discriminate dermatophyte clones?". 2011.
  68. Passarini, Michel Rodrigo Zambrano; Ottoni, C. A.; Santos, Cledir; Lima, Nelson; Sette, Lara Durães. "Avaliação da produção de lacase pela indução de íons cobre e detecção do gene em duas linhagens de ascomicetos isolados de esponjas marinhas". 2011.
  69. Klein, Nazareth M.; Santos, Cledir; Lima, Nelson; Asensi, Marise D.. "Establishment of a bacterial strain reference culture collection: university hospital Cassiano Antônio de Moraes (CCBR-HUCAM), Vitória (ES), Brazil". 2011.
  70. Pereira, Leonel João Pais; Dias, Nicolina Marques; Santos, Cledir; Lima, Nelson. "MALDI-TOF ICMS vs molecular typing in the identification of dermatophyte strains". 2011.
  71. Fraga, Marcelo Elias; Lima, Nelson; Santos, Cledir; Souza, Francisco Adriano de. "Caracterização de estirpes de Trichoderma por análise morfologica, filogenética e por espectros de massa obtidos por MALDI-TOF". 2011.
  72. Passarini, Michel R. Z.; Santos, Cledir; Lima, Nelson; Sette, Lara D.. "Characterisation of filamentous fungal diversity of Trichoderma genus isolated from marine sponge by sequencing ITS-rDNA and MALDI-TOF ICMS". 2011.
  73. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Micoteca da Universidade do Minho (MUM): 15 anos de funcionamento e sua recente certificação baseada na ISO 9001:2008". 2011.
  74. Rodrigues, Paula; Santos, Cledir; Kozakiewicz, Z.; Venâncio, Armando; Lima, Nelson. "MALDI-TOF ICMS as a modern approach to identify potential aflatoxigenic fungi". 2010.
  75. Ottoni, C. A.; Santos, Cledir; Lima, Nelson. "Utilization of white rot fungi for textile dye decolourisation under alkaline condition and high salt concentration in solid medium". 2010.
  76. Simões, Marta Filipa; Martins, Anabela; Dias, Nicolina; Santos, Cledir; Lima, Nelson. "Micoteca da Universidade do Minho (MUM): implementation of a Quality Management System based on ISO 9001:2008". 2010.
  77. Rodrigues, Paula; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Characterization and identification of aspergillus section flavi isolates from portuguese almonds using a polyphasic approach including MALDI-TOF ICMS". 2010.
  78. Lima, Nelson; Santos, Isabel M.; Simões, Marta Filipa Jesus Freitas; Santos, Cledir. "Micoteca da Universidade do Minho (MUM): a culture collection preparing the future". 2010.
  79. Santos, Cledir; Lima, Nelson; Sampaio, Paula; Pais, Célia. "Use of MALDI-TOF ICMS on yeast identification : application on Candida species with clinical relevance". 2010.
  80. Rodrigues, Paula; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Integrated morphologic, metabolic, molecular and spectral methods for identification of Aspergillus section Flavi isolated from Portuguese almonds.". 2010.
  81. Lima, Nelson; Ottoni, C. A.; Santos, Cledir. "Fungos e biorremediação". 2010.
  82. Santos, Cledir; Lima, Nelson. "MALDI-TOF ICMS as a powerful technique for strain authentications in Culture Collections". 2010.
  83. Rodrigues, Paula; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "MALDI-TOF ICMS as a modern approach to identify potential aflatoxigenic fungi". 2010.
  84. Santos, Cledir; Lima, Nelson. "MALDI-TOF ICMS na microbiologia clínica : porquê começar a usar?". 2010.
  85. Rodrigues, Paula; Torres, A.; Nunes F.; Leirós, Ana Catarina Correia; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Portuguese isolates of Aspergillus section Flavi unraveled by the calmodulin gene". 2010.
  86. Rodrigues, Paula; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Calmodulin gene as good voucher as MALDI-TOF ICMS to identify Portuguese isolates of Aspergillus section Flavi". 2010.
  87. Oliveira, Helena Maria Bezerra de; Siqueira, Virgínia M.; Barbosa, Patrícia; Callou, Máira Judith A.; Lira, Diana D.; Santos, Cledir; Lima, Nelson; Gusmão, Norma. "Fungos em água de abastecimento". 2010.
  88. Rodrigues, Paula; Soares, Célia; Freitas-Silva, Otniel; Santos, Cledir; Paterson, Russell; Kozakiewicz, Zofia; Venâncio, Armando; Lima, Nelson. "Contributions of Micoteca da Universidade do Minho to food mycology". 2010.
  89. Rodrigues, Paula; Torres, Aldara; Nunes, Florbela; Leirós, Catarina; Santos, Cledir; Venâncio, Armando; Lima, Nelson. "Portuguese isolates of Aspergillus section Flavi unraveled by the calmodulin gene". 2010.
  90. Simões, Marta Filipa; Martins, Anabela; Dias, Nicolina; Santos, Cledir; Lima, Nelson. "Micoteca da Universidade do Minho: Implementação de um sistema de gestão da qualidade com base na ISO 9001:2008". 2010.
  91. Siqueira, Virgínia M.; Santos, Cledir; Lima, Nelson. "Contaminantes e biofilmes fúngicos presentes nos sistemas de distribuição das águas de abastecimento público". 2009.
  92. Pereira, Leonel; Santos, Cledir; Dias, Nicolina; Lima, Nelson. "Aplicação do MALDI-TOF ICMS na abordagem polifásicada da identificação de isolados clínicos de Trichophyton rubrum". 2009.
  93. Rodrigues, Paula; Soares, Célia; Santos, Cledir; Fraga, Marcelo; Venâncio, Armando; Lima, Nelson. "A polyphasic approach for black Aspergillus identification using MALDI-TOF MS.". 2009.
  94. Rodrigues, Paula; Soares, Célia; Freitas-Silva, Otniel; Santos, Cledir; Paterson, Russell; Venâncio, Armando; Lima, Nelson. "Micotoxinas: contributos da Micoteca da Universidade do Minho (MUM) para a segurança alimentar.". 2009.
  95. Rodrigues, Paula; Santos, Cledir; Kozakiewicz, Zofia; Venâncio, Armando; Lima, Nelson. "Polyphasic approach including maldi-tof mass spectrometry to characterise aflatoxigenic species of aspergillus section flavi". 2009.
  96. Rodrigues, Paula; Soares, Célia; Freitas-Silva, Otniel; Santos, Cledir; Paterson, Russell; Kozakiewicz, Zofia; Venâncio, Armando; Lima, Nelson. "Micotoxinas: contributos da micoteca da Universidade do Minho (mum) para a segurança alimentar". 2009.
  97. Santos, Cledir; Okada, K.; Alves da Silva, C. A.; Gusmão, N. B.; Nascimento, A. E.; Lima, Nelson; Takaki, G. M. Campos; Messias, A. S.. "Environmental and industrial application criteria to establish the microbial culture collection of the Catholic University of Pernambuco (UCP)". 2008.
  98. Motta, Cristina Souza; Neves, Rejane P.; Araújo, J. M.; Calazans, G. M. T.; Santos, Cledir; Carneiro-da-Cunha, Maria G.; Lima-Filho, José. L.; Lima, Nelson. "The microbial culture collections of the Federal University of Pernambuco (UFPE) and the new consortium towards the establishment of BRC-UFPE". 2008.
  99. Santos, Cledir; Paterson, R. R. M.; Venâncio, Armando; Lima, Nelson. "Integration of MALDI-TOF MS data in the quality control of microbial culture collections". 2008.
  100. Rodrigues, Paula; Santos, Cledir; Kallow, Wibke; Erhard, Marcel; Welker, Martin; Kozakiewicz, Zofia; Lima, Nelson; Venâncio, Armando. "MALDI-TOF MS potentialities and limits to characterise aflatoxigenic species of Aspergillus Section Flavi". 2008.
  101. Lima, Nelson; Rodrigues, Paula; Soares, Célia; Santos, Cledir; Paterson, Russell; Venâncio, Armando. "Modern polyphasic methods that include MALDI-TOF analyses for fungal identifications and authentications". 2008.
  102. Pereira, Cláudia S.G.P.; Santos, Cledir; Barreira, João C.M.; Moreira, Rui; Ferreira, Isabel C.F.R.; Estevinho, Leticia M.; Gomes, Paula. "Synthesis and antimicrobial activity of dipeptide esters of the anti-rectroviral drug acyclovir". 2005.
Journal article
  1. Jéssica Costa; Nelson Lima; Cledir Santos. "An overview on possible links between aflatoxin B1 exposure and gallbladder cancer". Mycotoxin Research 37 3 (2021): 205-214. https://doi.org/10.1007/s12550-021-00431-1.
    10.1007/s12550-021-00431-1
  2. Igor Moreira; Jéssica Costa; Leonardo Vilela; Nelson Lima; Cledir Santos; Rosane Schwan. "Influence of S. cerevisiae and P. kluyveri as starters on chocolate flavour". Journal of the Science of Food and Agriculture (2021): https://doi.org/10.1002/jsfa.11082.
    10.1002/jsfa.11082
  3. Jéssica Costa; Eugénio C. Ferreira; Cledir Santos. "COVID-19, Chikungunya, Dengue and Zika Diseases: An Analytical Platform Based on MALDI-TOF MS, IR Spectroscopy and RT-qPCR for Accurate Diagnosis and Accelerate Epidemics Control". Microorganisms (2021): https://doi.org/10.3390/microorganisms9040708.
    10.3390/microorganisms9040708
  4. Costa, Jéssica; Ferreira, Eugénio C.; Santos, Cledir. "COVID-19, Chikungunya, Dengue and Zika diseases: an analytical platform based on MALDI-TOF MS, IR spectroscopy and RT-qPCR for accurate diagnosis and accelerate epidemics control". (2021): http://hdl.handle.net/1822/71102.
    10.3390/microorganisms9040708
  5. Gómez-Velásquez, Juan C.; Mojica-Figueroa, Iván L.; Santos, Cledir; Lima, Nelson; Mesa-Arango, Ana C.. "MALDI-TOF MS: foundations and a practical approach to the clinically relevant filamentous fungi identification". (2021): http://hdl.handle.net/1822/74861.
    10.1007/s12281-021-00423-9
  6. Moreira, Igor; Costa, Jéssica; Vilela, Leonardo; Lima, Nelson; Santos, Cledir; Schwan, Rosane. "Influence of S. cerevisiae and P. kluyveri as starters on chocolate flavour". (2021): http://hdl.handle.net/1822/73406.
    10.1002/jsfa.11082
  7. Costa, Jéssica; Lima, Nelson; Santos, Cledir. "An overview on possible links between aflatoxin B1 exposure and gallbladder cancer". (2021): http://hdl.handle.net/1822/73852.
    10.1007/s12550-021-00431-1
  8. Carla Santos; Blenda Naara Santos da Silva; Ana Francisca Tibúrcia Amorim Ferreira e Ferreira; Cledir Santos; Nelson Lima; Jânia Lília da Silva Bentes. "Fungal Endophytic Community Associated with Guarana (Paullinia cupana Var. Sorbilis): Diversity Driver by Genotypes in the Centre of Origin". Journal of Fungi 6 3 (2020): 123-123. https://doi.org/10.3390/jof6030123.
    10.3390/jof6030123
  9. Maria Rosário Martins; Carla Santos; Célia Soares; Cledir Santos; Nelson Lima. "Gongronella eborensis sp. nov., from vineyard soil of Alentejo (Portugal)". International Journal of Systematic and Evolutionary Microbiology 70 5 (2020): 3475-3482. https://doi.org/10.1099/ijsem.0.004201.
    10.1099/ijsem.0.004201
  10. Costa, Jéssica; Rodriguez, R.; Santos, Carla Isabel Arcanjo; Soares, Célia; Lima, Nelson; Santos, Cledir. "Mycobiota in Chilean chilli Capsicum annuum L. used for production of Merkén". (2020): http://hdl.handle.net/1822/66978.
    10.1016/j.ijfoodmicro.2020.108833
  11. Santos, Carla Isabel Arcanjo; Santos da Silva, Blenda Naara; Amorim Ferreira e Ferreira, Ana Francisca Tibúrcia; Santos, Cledir; Lima, Nelson; Silva Bentes, Jânia Lília da. "Fungal endophytic community associated with guarana (Paullinia cupana var. Sorbilis): diversity driver by genotypes in the centre of origin". (2020): http://hdl.handle.net/1822/66199.
    10.3390/jof6030123
  12. Matos, Aline M. F.; Moreira, Lucas M.; Barczewski, Bianca F.; Matos, Lucas X. de; Oliveira, Jordane B. V. de; Pimentel, Maria Ines F.; Almeida-Paes, Rodrigo; et al. "Identification by MALDI-TOF MS of Sporothrix brasiliensis isolated from a subconjunctival infiltrative lesion in an immunocompetent patient". (2020): http://hdl.handle.net/1822/65583.
    10.3390/microorganisms8010022
  13. Martins, M. Rosário; Santos, Carla; Soares, Célia; Santos, Cledir; Lima, Nelson. "Gongronella eborensis sp. nov., from vineyard soil of Alentejo (Portugal)". (2020): http://hdl.handle.net/10174/29713.
    https://doi.org/10.1099/ijsem.0.004201
  14. Mario Henrique Paziani; Ludmilla Tonani Carvalho; Marcia de Souza Carvalho Melhem; Margarete Teresa Gottardo de Almeida; Maria Emilia Nadaletto Bonifácio da Silva; Roberto Martinez; Cledir Santos; Marcia Regina von Zeska Kress. "First Comprehensive Report of Clinical Fusarium Strains Isolated in the State of Sao Paulo (Brazil) and Identified by MALDI-TOF MS and Molecular Biology". Microorganisms 8 1 (2019): 66-66. https://doi.org/10.3390/microorganisms8010066.
    10.3390/microorganisms8010066
  15. Aline M. F. Matos; Lucas Machado Moreira; Bianca F. Barczewski; Lucas X. de Matos; Jordane B. V. de Oliveira; Maria Ines F. Pimentel; Rodrigo Almeida-Paes; et al. "Identification by MALDI-TOF MS of Sporothrix brasiliensis Isolated from a Subconjunctival Infiltrative Lesion in an Immunocompetent Patient". Microorganisms (2019): https://www.mdpi.com/2076-2607/8/1/22.
    10.3390/microorganisms8010022
  16. "TAXONOMIA POLIFÁSICA PARA IDENTIFICAÇÃO DE ASPERGILLUS SEÇÃO FLAVI: UMA REVISÃO". Revista Ifes Ciência (2019): http://dx.doi.org/10.36524/ric.v1i1.235.
    10.36524/ric.v1i1.235
  17. Rodrigo Rodriguez; Carla Santos; Marta F. Simões; Célia Soares; Cledir Santos; Nelson Lima. "Polyphasic, Including MALDI-TOF MS, Evaluation of Freeze-Drying Long-Term Preservation on Aspergillus (Section Nigri) Strains". Microorganisms 7 9 (2019): 291-291. https://doi.org/10.3390/microorganisms7090291.
    10.3390/microorganisms7090291
  18. "Fungal Planet description sheets: 868–950". Persoonia - Molecular Phylogeny and Evolution of Fungi (2019): http://dx.doi.org/10.3767/persoonia.2019.42.11.
    10.3767/persoonia.2019.42.11
  19. "Fungal Community Ecology Using MALDI-TOF MS Demands Curated Mass Spectral Databases". Frontiers in Microbiology (2019): http://dx.doi.org/10.3389/fmicb.2019.00315.
    10.3389/fmicb.2019.00315
  20. Jéssica Costa; Rodrigo Rodríguez; Esther Garcia-Cela; Angel Medina; Naresh Magan; Nelson Lima; Paola Battilani; Cledir Santos. "Overview of Fungi and Mycotoxin Contamination in Capsicum Pepper and in Its Derivatives". Toxins 11 1 (2019): 27-27. https://doi.org/10.3390/toxins11010027.
    10.3390/toxins11010027
  21. Rodriguez, R.; Santos, Carla; Simões, Marta Filipa; Soares, Célia; Santos, Cledir; Lima, Nelson. "Polyphasic, including MALDI-TOF MS, evaluation of freeze-drying long-term preservation on Aspergillus (section Nigri) strains". (2019): http://hdl.handle.net/1822/61259.
    10.3390/microorganisms7090291
  22. Costa, Jéssica; Rodriguez, R.; Garcia-Cela, Esther; Medina, Angel; Magan, Naresh; Lima, Nelson; Battilani, Paola; Santos, Cledir. "Overview of fungi and mycotoxin contamination in capsicum pepper and in its derivatives". (2019): http://hdl.handle.net/1822/58402.
    10.3390/toxins11010027
  23. Igor Magalhães da Veiga Moreira; Leonardo de Figueiredo Vilela; Cledir Santos; Nelson Lima; Rosane Freitas Schwan. "Volatile compounds and protein profiles analyses of fermented cocoa beans and chocolates from different hybrids cultivated in Brazil". Food Research International 109 (2018): 196-203. https://doi.org/10.1016/j.foodres.2018.04.012.
    10.1016/j.foodres.2018.04.012
  24. Moreira, Igor Magalhães da Veiga; Vilela, Leonardo de Figueiredo; Santos, Cledir; Lima, Nelson; Schwan, Rosane Freitas. "Volatile compounds and protein profiles analyses of fermented cocoa beans and chocolates from different hybrids cultivated in Brazil". (2018): http://hdl.handle.net/1822/55019.
    10.1016/j.foodres.2018.04.012
  25. "Metalaxyl Degradation by Mucorales Strains Gongronella sp. and Rhizopus oryzae". Molecules (2017): http://www.mdpi.com/1420-3049/22/12/2225.
    10.3390/molecules22122225
  26. "Impact of a Microbial Cocktail Used as a Starter Culture on Cocoa Fermentation and Chocolate Flavor". Molecules (2017): http://www.mdpi.com/1420-3049/22/5/766.
    10.3390/molecules22050766
  27. "MALDI-TOF MS for identification of food spoilage filamentous fungi". Current Opinion in Food Science (2017): http://dx.doi.org/10.1016/j.cofs.2017.02.002.
    10.1016/j.cofs.2017.02.002
  28. "Fermentation profile and identification of lactic acid bacteria and yeasts of rehydrated corn kernel silage". Journal of Applied Microbiology (2017):
    10.1111/jam.13371
  29. Martins, M. Rosário; Santos, Cledir; Pereira, Pablo; Cruz-Morais, Júlio; Lima, Nelson. "Metalaxyl degradation by Mucorales strains Gongronella sp. and Rhizopus oryzae". (2017): http://hdl.handle.net/1822/48441.
    10.3390/molecules22122225
  30. Martins, M. Rosário; Santos, Cledir; Pereira, Pablo; Crus-Morais, Júlio; Lima, Nelson. "Metalaxyl Degradation by Mucorales Strains Gongronella sp. and Rhizopus oryzae". (2017): http://hdl.handle.net/10174/22433.
  31. Moreira, Igor Magalhães da Veiga; Vilela, Leonardo de Figueiredo; Miguel, Maria Gabriela da Cruz Pedroso; Lima, Nelson; Santos, Cledir; Schwan, Rosane F.. "Impact of a microbial cocktail used as starter culture on cocoa fermentation and chocolate flavor". (2017): http://hdl.handle.net/1822/46316.
    10.3390/molecules22050766
  32. Miguel, M. G. C. P.; Reis, L. V. C.; Efraim, P.; Santos, Cledir; Lima, Nelson; Schwan, Rosane F.. "Cocoa fermentation: Microbial identification by MALDI-TOF MS, and sensory evaluation of produced chocolate". (2017): http://hdl.handle.net/1822/43316.
    10.1016/j.lwt.2016.11.076
  33. Lisboa, Dianny Silva; Santos, Cledir; Barbosa, Renan N.; Magalhães, Oliane; Paiva, Laura M.; Moreira, Keila A.; Lima, Nelson; Souza-Motta, Cristina M.. "Requalification of a Brazilian Trichoderma collection and screening of its capability to decolourise real textile effluent". (2017): http://hdl.handle.net/1822/46317.
    10.3390/ijerph14040373
  34. Cledir Santos. "The Chilean Network of Microbial Culture Collections: Establishment and Operation". Boletín Micológico (2016):
    10.22370/bolmicol.2016.31.2.491
  35. "Immobilization of the white-rot fungus Anthracophyllum discolor to degrade the herbicide atrazine". AMB Express (2016):
    10.1186/s13568-016-0275-z
  36. "High Laccase Expression by Trametes versicolor in a Simulated Textile Effluent with Different Carbon Sources and PHs". International Journal of Environmental Research and Public Health (2016): http://www.mdpi.com/1660-4601/13/8/778.
    10.3390/ijerph13080778
  37. "Establishment of a Quality Management System Based on ISO 9001 Standard in a Public Service Fungal Culture Collection". Microorganisms (2016): http://www.mdpi.com/2076-2607/4/2/21.
    10.3390/microorganisms4020021
  38. "Polyphasic Approach Including MALDI-TOF MS/MS Analysis for Identification and Characterisation of Fusarium verticillioides in Brazilian Corn Kernels". Toxins (2016):
    10.3390/toxins8030054
  39. "New insights for diagnosis of pineapple fusariosis by MALDI-TOF MS technique". (2016):
    10.1007/s00284-016-1041-9
  40. "Fungi from a groundwater-fed drinking water supply system in Brazil". (2016):
    10.3390/ijerph13030304
  41. "Atrazine dissipation in a biobed system inoculated with immobilized white-rot-fungi". (2016):
    10.1080/03650340.2016.1155699
  42. Sampaio, J.; Machado, Diana; Gomes, Ana Marta; Machado, Idalina; Santos, Cledir; Lima, Nelson; Carvalho, Maria João; et al. "Deciphering the contribution of biofilm to the pathogenesis of peritoneal dialysis infections: characterization and microbial behaviour on dialysis fluids". (2016): http://hdl.handle.net/1822/42129.
    10.1371/journal.pone.0157870
  43. Ottoni, Cristiane [UNESP]; Simões, Marta F.; Fernandes, Sara; Santos, Cledir R.; Lima, Nelson. "High laccase expression by Trametes versicolor in a simulated textile effluent with different carbon sources and PHs". (2016): http://hdl.handle.net/11449/168892.
    http://dx.doi.org/10.3390/ijerph13080778
  44. Joana Sampaio; Diana Machado; Ana Marta Gomes; Idalina Machado; Cledir Santos; Nelson Lima; Maria João Carvalho; et al. "Deciphering the contribution of biofilm to the pathogenesis of peritoneal dialysis infections: Characterization and microbial behaviour on dialysis fluids". (2016): https://hdl.handle.net/10216/105021.
    10.1371/journal.pone.0157870
  45. Oliveira, Helena M. B.; Santos, Cledir; Paterson, R. R. M.; Gusmão, Norma B.; Lima, Nelson. "Fungi from a groundwater-fed drinking water supply system in Brazil". (2016): http://hdl.handle.net/1822/42137.
    10.3390/ijerph13030304
  46. Simões, Marta Filipa; Dias, Nicolina; Santos, Cledir; Lima, Nelson. "Establishment of a quality management system based on ISO 9001 standard in a public service fungal culture collection". (2016): http://hdl.handle.net/1822/42130.
    10.3390/microorganisms4020021
  47. Elgueta, Sebastian; Santos, Cledir; Lima, Nelson; Diez, M. C.. "Immobilization of the white-rot fungus Anthracophyllum discolor to degrade the herbicide atrazine". (2016): http://hdl.handle.net/1822/42965.
    10.1186/s13568-016-0275-z
  48. Martins, Maria Rosário; Dantas, Vânia; Soares, Célia; Santos, Cledir Rodrigues; Lima, Nelson. "IDENTIFICAÇÃO POLIFÁSICA DE GONGRONELLA SP. E DE RHIZOPUS SP. DEGRADADORES DO FUNGICIDA SISTÉMICO METALAXIL". (2016): http://hdl.handle.net/10174/19940.
  49. Elgueta, Sebastian; Santos, Cledir; Lima, Nelson; Diez, M. C.. "Atrazine dissipation in a biobed system inoculated with immobilized white-rot fungi". (2016): http://hdl.handle.net/1822/42359.
    10.1080/03650340.2016.1155699
  50. Ottoni, C. A.; Simões, Marta Filipa; Fernandes, S.; Santos, Cledir; Lima, Nelson. "High laccase expression by Trametes versicolor in a simulated textile effluent with different carbon sources and pHs". (2016): http://hdl.handle.net/1822/42341.
    10.3390/ijerph13080778
  51. Chang, Susane; Carneiro-Leão, Mariele Porto; Oliveira, Benny Ferreira; Souza-Motta, Cristina; Lima, Nelson; Santos, Cledir; Oliveira, Neiva Tinti. "Polyphasic approach including MALDI-TOF MS/MS analysis for identification and characterisation of Fusarium verticillioides in Brazilian corn kernels". (2016): http://hdl.handle.net/1822/40708.
    10.3390/toxins8030054
  52. Santos, Cledir; Ventura, José Aires; Lima, Nelson. "New insights for diagnosis of Pineapple Fusariosis by MALDI-TOF MS technique". (2016): http://hdl.handle.net/1822/42162.
    10.1007/s00284-016-1041-9
  53. "Production and chemical characterization of pigments in filamentous fungi". (2015):
    10.1099/mic.0.000168
  54. "MALDI-TOF MS to identify the pineapple pathogen Fusarium guttiforme and its antagonist Trichoderma asperellum on decayed pineapple". (2015):
    10.1007/s40858-015-0027-7
  55. "Induction, expression and characterisation of laccase genes from the marine-derived fungal strains Nigrospora sp. CBMAI 1328 and Arthopyrenia sp. CBMAI 1330". AMB Express (2015): http://www.amb-express.com/content/5/1/19.
    10.1186/s13568-015-0106-7
  56. "Development and optimization of a new MALDI-TOF protocol for the identification of Sporothrix species complex". Research in Microbiology (2015):
    10.1016/j.resmic.2014.12.008
  57. "Use of polyphasic approach including MALDI-TOF MS for identification of Aspergillus section Flavi strains isolated from food commodities in Brazil". Annals of Microbiology (2015):
    10.1007/s13213-015-1050-0
  58. Amaral, Cledir de Araújo; Portela, Margareth Crisóstomo; Muniz, Pascoal Torres; Farias, Edson dos Santos; Araújo, Thiago Santos de; Souza, Orivaldo Florêncio de. "Associação da força de preensão manual com morbidades referidas em adultos de Rio Branco, Acre, Brasil: estudo de base populacional". (2015): https://www.arca.fiocruz.br/handle/icict/28484.
  59. Passarini, Michel Rodrigo Zambrano; Ottoni, Cristiane Angelica; Santos, Cledir; Lima, Nelson; Sette, Lara Durães [UNESP]. "Induction, expression and characterisation of laccase genes from the marine-derived fungal strains Nigrospora sp. CBMAI 1328 and Arthopyrenia sp. CBMAI 1330". (2015): http://hdl.handle.net/11449/131261.
    http://dx.doi.org/10.1186/s13568-015-0106-7
  60. Amaral,Cledir de Araújo; Portela,Margareth Crisóstomo; Muniz,Pascoal Torres; Farias,Edson dos Santos; Araújo,Thiago Santos de; Souza,Orivaldo Florêncio de. "Associação da força de preensão manual com morbidades referidas em adultos de Rio Branco, Acre, Brasil: estudo de base populacional". (2015): http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-311X2015000601313.
  61. Silva, Fernanda Chaves da; Chalfoun, Sara Maria; Batista, Luis Roberto; Santos, Cledir; Lima, Nelson. "TAXONOMIA POLIFÁSICA PARA IDENTIFICAÇÃO DE ASPERGILLUS SEÇÃO FLAVI: UMA REVISÃO". (2015): http://ojs.ifes.edu.br/index.php/ric/article/view/302.
  62. Passarini, Michel Rodrigo Zambrano; Ottoni, C. A.; Santos, Cledir; Lima, Nelson; Sette, Lara Durães. "Induction, expression and characterisation of laccase genes from the marine-derived fungal strains Nigrospora sp. CBMAI 1328 and Arthopyrenia sp. CBMAI 1330". (2015): http://hdl.handle.net/1822/35095.
    10.1186/s13568-015-0106-7
  63. Santos, Cledir; Ventura, José A.; Costa, Hélcio; Fernandes, Patrícia M.B.; Lima, Nelson. "MALDI-TOF MS to identify the pineapple pathogen Fusarium guttiforme and its antagonist Trichoderma asperellum on decayed pineapple". (2015): http://hdl.handle.net/1822/37758.
    10.1007/s40858-015-0027-7
  64. Silva, Fernanda Chaves da; Chalfoun, Sara Maria; Batista, Luis Roberto; Santos, Cledir; Lima, Nelson. "Taxonomia polifásica para a identificação de Aspergillus seção Flavi: uma revisão". (2015): http://hdl.handle.net/1822/70364.
    10.36524/ric.v1i1.235
  65. "Peritoneal dialysis infections: An opportunity for improvement". American Journal of Infection Control (2014):
    10.1016/j.ajic.2014.05.036
  66. "Application of MALDI-TOF MS for requalification of a Candida clinical isolates culture collection". Brazilian Journal of Microbiology (2014):
    10.1590/S1517-83822014005000044
  67. "Purification of polygalacturonases produced by Aspergillus niger using an aqueous two-phase system". Fluid Phase Equilibria (2014):
    10.1016/j.fluid.2014.03.018
  68. "Matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) applied to diatom identification: influence of culturing age". Aquatic Biology (2014):
    10.3354/ab00548
  69. "Synthesis, characterisation and antifungal activity of chemically and fungal-produced silver nanoparticles against Trichophyton rubrum". Journal of Applied Microbiology (2014):
    10.1111/jam.12652
  70. Lima-Neto,Reginaldo; Santos,Cledir; Lima,Nelson; Sampaio,Paula; Pais,Célia; Neves,Rejane P.. "Application of MALDI-TOF MS for requalification of a Candida clinical isolates culture collection". (2014): http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822014000200020.
  71. Lima-Neto, Reginaldo; Santos, Cledir; Lima, Nelson; Sampaio, Paula; Pais, Célia; Neves, Rejane P.. "Application of MALDI-TOF MS for requalification of a Candida clinical isolates culture collection". (2014): http://hdl.handle.net/1822/31883.
    10.1590/S1517-83822014005000044
  72. Rodrigues, Anabela; Maciel, Marília de Holanda Cavalcanti; Santos, Cledir; Machado, Diana Sofia Rodrigues; Sampaio, Joana Marisa Brito; Lima, Nelson; Carvalho, Maria J.; Cabrita, António; Martins, Margarida Isabel Barros Coelho. "Peritoneal dialysis infections : an opportunity for improvement". (2014): http://hdl.handle.net/1822/31542.
    10.1016/j.ajic.2014.05.036
  73. Ottoni, C. A.; Lima, Luís; Santos, Cledir; Lima, Nelson. "Effect of different carbon sources on decolourisation of an industrial textile dye under alkaline-saline conditions". (2014): http://hdl.handle.net/1822/27612.
    10.1007/s00284-013-0441-3
  74. Maciel, Marília de Holanda Cavalcanti; Ottoni, C. A.; Herculano, Polyanna N.; Porto, Tatiana Souza; Porto, Ana L. F.; Santos, Cledir; Lima, Nelson; Moreira, Keila; Motta, Cristina Maria de Souza. "Purification of polygalacturonases produced by Aspergillus niger using an aqueous two-phase system". (2014): http://hdl.handle.net/1822/31601.
    10.1016/j.fluid.2014.03.018
  75. Pereira, Leonel; Dias, Nicolina; Carvalho, Juliana; Fernandes, Sara; Santos, Cledir; Lima, Nelson. "Synthesis, characterisation and antifungal activity of chemically and fungal-produced silver nanoparticles against Trichophyton rubrum". (2014): http://hdl.handle.net/1822/31493.
    10.1111/jam.12652
  76. Pereira, Leonel João Pais; Dias, Nicolina; Santos, Cledir; Lima, Nelson. "The use of MALDI-TOF ICMS as an alternative tool for Trichophyton rubrum identification and typing". (2014): http://hdl.handle.net/1822/28012.
    10.1016/j.eimc.2013.01.009
  77. "The importance of structural diversity of spores in the taxonomy of Aspergillus (section Nigri)". Microscopy and Microanalysis (2013):
    10.1017/S1431927613001001
  78. Kozakiewicz, Z.; Lima, N.; Ottoni, C.A.; Santos, C.. "White-rot fungi capable of decolourising textile dyes under alkaline conditions". Folia Microbiologica 58 3 (2013): 187-193. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876429869&partnerID=MN8TOARS.
    10.1007/s12223-012-0196-4
  79. Dias, N.; Lima, N.; Pereira, L.; Santos, C.. "The use of MALDI-TOF ICMS as an alternative tool for Trichophyton rubrum identification and typing". Enfermedades Infecciosas y Microbiologia Clinica (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875027707&partnerID=MN8TOARS.
    10.1016/j.eimc.2013.01.009
  80. Lima, N.; MacIel, M.; Moreira, K.; Ottoni, C.; Santos, C.; Souza-Motta, C.. "Production of polygalacturonases by Aspergillus section Nigri strains in a fixed bed reactor". Molecules 18 2 (2013): 1660-1671. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874589019&partnerID=MN8TOARS.
    10.3390/molecules18021660
  81. Berlinck, R.G.S.; Lima, N.; Passarini, M.R.Z.; Santos, C.; Sette, L.D.. "Filamentous fungi from the Atlantic marine sponge Dragmacidon reticulatum". Archives of Microbiology 195 2 (2013): 99-111. http://www.scopus.com/inward/record.url?eid=2-s2.0-84873701959&partnerID=MN8TOARS.
    10.1007/s00203-012-0854-6
  82. Gusmão, N.B.; Lima, N.; Oliveira, H.M.B.; Paterson, R.R.M.; Santos, C.; Siqueira, V.M.. "Biofilms from a Brazilian water distribution system include filamentous fungi". Canadian Journal of Microbiology 59 3 (2013): 183-188. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875642565&partnerID=MN8TOARS.
    10.1139/cjm-2012-0529
  83. Ottoni, C.; Lima, L.; Santos, C.; Lima, N.. "Effect of Different Carbon Sources on Decolourisation of an Industrial Textile Dye Under Alkaline-Saline Conditions". Current Microbiology (2013): 1-6. http://www.scopus.com/inward/record.url?eid=2-s2.0-84882502987&partnerID=MN8TOARS.
    10.1007/s00284-013-0441-3
  84. Simes, M.F.; Santos, C.; Lima, N.. "Structural diversity of aspergillus (section nigri) spores". Microscopy and Microanalysis 19 5 (2013): 1151-1158. http://www.scopus.com/inward/record.url?eid=2-s2.0-84884561135&partnerID=MN8TOARS.
    10.1017/S1431927613001712
  85. Cruz, R.; Santos, C.; Silva de Lima, J.; Aparecida Moreira, K.; Maria de souza-Motta, C.. "Diversity of Penicillium in soil of Caatinga and Atlantic Forest areas of Pernambuco, Brazil: An ecological approach". Nova Hedwigia 97 3-4 (2013): 543-556. http://www.scopus.com/inward/record.url?eid=2-s2.0-84885895039&partnerID=MN8TOARS.
    10.1127/0029-5035/2013/0127
  86. Cruz, Roberta; Santos, Cledir; Lima, Juliana Silva de; Moreira, Keila; Motta, Cristina Souza. "Diversity of Penicillium in soil of Caatinga and Atlantic Forest areas of Pernambuco, Brazil: an ecological approach". (2013): http://hdl.handle.net/1822/28050.
    10.1127/0029-5035/2013/0127
  87. Simões, Marta Filipa Jesus Freitas; Santos, Cledir; Lima, Nelson. "Structural diversity of aspergillus (section nigri) spores". (2013): http://hdl.handle.net/1822/26071.
    10.1017/S1431927613001712
  88. "A utilização da técnica de MALDI-TOF MS na identificação de fitopatógenos e no diagnóstico de doenças de plantas". Revisão Anual de Patologia de Plantas (2012): http://repositorium.sdum.uminho.pt/handle/1822/20923.
  89. Fernandes, S.; Simões, M.; Dias, N.; Santos, C.; Lima, N.. "Fungicidal Activity of Microbicides". Russell, Hugo & Ayliffe's: Principles and Practice of Disinfection, Preservation and Sterilization (2012): 142-154. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887181342&partnerID=MN8TOARS.
    10.1002/9781118425831.ch7
  90. Dias, N.; Lima, N.; Portela, M.; Santos, C.. "Toenail Onychomycosis in a Portuguese Geriatric Population". Mycopathologia 172 1 (2011): 55-61. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960586043&partnerID=MN8TOARS.
    10.1007/s11046-011-9402-1
  91. Dias, N.M.; Lima, N.; Oliveira, M.M.E.; Portela, M.A.; Santos, C.; Zancope-Oliveira, R.M.. "Sporotrichosis caused by Sporothrix mexicana, Portugal". Emerging Infectious Diseases 17 10 (2011): 1975-1976. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053266463&partnerID=MN8TOARS.
    http://dx.doi.org/10.3201/eid1710.110737
  92. Lima, N.; Rodrigues, P.; Santos, C.; Venâncio, A.. "Species identification of Aspergillus section Flavi isolates from Portuguese almonds using phenotypic, including MALDI-TOF ICMS, and molecular approaches". Journal of Applied Microbiology 111 4 (2011): 877-892. http://www.scopus.com/inward/record.url?eid=2-s2.0-80052792324&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2011.05116.x
  93. Lima, N.; Pais, C.; Sampaio, P.; Santos, C.. "Matrix-assisted laser desorption/ionization time-of-flight intact cell mass spectrometry to detect emerging pathogenic Candida species". Diagnostic Microbiology and Infectious Disease 71 3 (2011): 304-308. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053927280&partnerID=MN8TOARS.
    10.1016/j.diagmicrobio.2011.07.002
  94. Gusmão, N.B.; Lima, N.; Oliveira, H.M.B.; Paterson, R.R.M.; Santos, C.; Siqueira, V.M.. "Filamentous fungi in drinking water, particularly in relation to biofilm formation". International Journal of Environmental Research and Public Health 8 2 (2011): 456-469. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953267048&partnerID=MN8TOARS.
    10.3390/ijerph8020456
  95. Martins, M. Rosário; Santos, Cledir; Pereira, Pablo; Simões, Fernanda; Cruz-Morais, Júlio; Lima, Nelson. "Characterisation by molecular biology and MALDI-TOF ICMS of zygomycete Gongronella sp. isolated from an Alentejo vineyard soil". (2011): http://hdl.handle.net/10174/3843.
  96. Fraga, M.E.; Kozakiewicz, Z.; Lima, N.; Santos, C.. "Fourier transform infrared as a powerful technique for the identification and characterization of filamentous fungi and yeasts". Research in Microbiology 161 2 (2010): 168-175. http://www.scopus.com/inward/record.url?eid=2-s2.0-77949916349&partnerID=MN8TOARS.
    10.1016/j.resmic.2009.12.007
  97. Lima, N.; Paterson, R.R.M.; Santos, C.; Venâncio, A.. "Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry". Journal of Applied Microbiology 108 2 (2010): 375-385. http://www.scopus.com/inward/record.url?eid=2-s2.0-74049132252&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2009.04448.x
  98. "Structure activity relationships for dipeptide prodrugs of acyclovir: Implications for prodrug design". European Journal of Medicinal Chemistry (2009):
    10.1016/j.ejmech.2008.08.009
  99. Santos, Cledir R.; Capela, Rita; Pereira, Claudia S. G. P.; Valente, Emilia; Gouveia, Luis; Pannecouque, Christophe; De Clercq, Erik; Moreira, Rui; Gomes, Paula. "Structure-activity relationships for dipeptide prodrugs of acyclovir". (2009): http://hdl.handle.net/10451/21170.
    http://dx.doi.org/10.1016/j.ejmech.2008.08.009
  100. Lima, N.; Paterson, R.R.M.; Santos, C.; Sariah, M.; Zainal Abidin, M.A.. "Mutagenic and inhibitory compounds produced by fungi affect detrimentally diagnosis and phylogenetic analyses". Current Bioactive Compounds 4 4 (2008): 245-257. http://www.scopus.com/inward/record.url?eid=2-s2.0-65649092120&partnerID=MN8TOARS.
    10.2174/157340708786847906
  101. Santos, C.. "Intramolecular cyclization: A promising strategy in the prodrug conception | Ciclização intramolecular: Uma estratégia promissora no desenvolvimento de pró-fármacos". Revista Brasileira de Ciencias Farmaceuticas/Brazilian Journal of Pharmaceutical Sciences 44 3 (2008): 349-360. http://www.scopus.com/inward/record.url?eid=2-s2.0-55849098881&partnerID=MN8TOARS.
    10.1590/S1516-93322008000300004
  102. De Clercq, E.; Gomes, P.; Gouveia, L.; Morais, J.; Moreira, R.; Nielsen, C.U.; Pannecouque, C.; Santos, C.; Steffansen, B.. "Dipeptide derivatives of AZT: Synthesis, chemical stability, activation in human plasma, hPEPT1 affinity, and antiviral activity". ChemMedChem 3 6 (2008): 970-978. http://www.scopus.com/inward/record.url?eid=2-s2.0-48149103948&partnerID=MN8TOARS.
    10.1002/cmdc.200800012
  103. Santos,Cledir. "Ciclização intramolecular: uma estratégia promissora no desenvolvimento de pró-fármacos". (2008): http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-93322008000300004.
  104. Cledir Santos; Jose Morais; Luis Gouveia; Erik de Clercq; Christophe Pannecouque; Carsten Uhd Nielsen; Bente Steffansen; Rui Moreira; Paula Gomes. "Dipeptide derivatives of AZT: Synthesis, chemical stability, activation in human plasma, hPEPT1 affinity, and antiviral activity". (2008): https://repositorio-aberto.up.pt/handle/10216/82105.
    10.1002/cmdc.200800012
  105. Santos, Cledir; Morais, Jose; Gouveia, Luis; de Clercq, Erik; Pannecouque, Christophe; Nielsen, Carsten Uhd; Steffansen, Bente; Moreira, Rui; Gomes, Paula. "Dipeptide derivatives of AZT". (2008): http://hdl.handle.net/10451/21282.
    http://dx.doi.org/10.1002/cmdc.200800012
  106. De Oliveira, E.; Dos Santos, A.P.; Gomes, P.; Mateus, M.L.; Moreira, R.; Santos, C.. "Cyclization-activated prodrugs. Synthesis, reactivity and toxicity of dipeptide esters of paracetamol". Bioorganic and Medicinal Chemistry Letters 15 6 (2005): 1595-1598. http://www.scopus.com/inward/record.url?eid=2-s2.0-14644436965&partnerID=MN8TOARS.
    10.1016/j.bmcl.2005.01.065
Newspaper article
  1. Santos, Cledir; Tensol, Juliana; Gervasio, Ivani; Lima, Nelson; Schwan, Rosane F.. "Culture Collection of Agricultural Microbiology - UFLA, Brazil, is implementing a QMS based on ISO 9001:2008", 2014, http://hdl.handle.net/1822/36743.
Thesis / Dissertation
  1. Almeida, Alex-Sandra Farias de. "Síntese de nanopartículas de prata por fungos endofíticos isolados de guaranazeiro e seu efeito contra fitopatógenos". PhD, 2019. https://tede.ufam.edu.br/handle/tede/7045.
  2. Silva, Blenda Naara Santos da. "Diversidade e atividade biológica de fungos endofíticos do guaraná (Paullinia cupana var. sorbillis)". PhD, 2019. https://tede.ufam.edu.br/handle/tede/7173.
  3. LISBOA, Dianny Carolyne Vasconcelos da Silva. "Biorremediação de efluentes de lavanderias têxteis por espécies de Trichoderma da Micoteca URM produtoras de enzimas oxidativas". PhD, 2017. https://repositorio.ufpe.br/handle/123456789/30756.
  4. Klein, Nazareth Magnago. "Estudo genômico e fenotípico, que inclui a abordagem de perfis proteômicos por MALDI-TOF MS, de isolados de hemoculturas para o estabelecimento de uma coleção de bactérias de referência". PhD, 2015. http://hdl.handle.net/1822/36751.
  5. Medeiros, Luciane Martins. "Criação da Bacterioteca de Biomanguinhos, caracterização de estirpes bacterianas e desenvolvimento de um sistema integrado de identificação de micro-organismos e de rastreamento de fontes de contaminação". PhD, 2015. https://www.arca.fiocruz.br/handle/icict/40059.
  6. Simões, Marta Filipa Jesus Freitas. "Quality parameters in a culture collection - Micoteca da Universidade do Minho". PhD, 2013. http://hdl.handle.net/1822/28820.
  7. SILVA, Lidiane Roberta Cruz da. "Espécies de Penicillium em solos de caatinga e Mata Atlântica, produção de tanase e detecção do potencial micotoxigênico". PhD, 2013. https://repositorio.ufpe.br/handle/123456789/12804.
  8. Ottoni, C. A.. "Descoloração de corantes têxteis por fungos ligninolíticos em condições de pH e salinidade elevada". PhD, 2012. http://hdl.handle.net/1822/20855.
  9. Sequeira, Lídia Sofia. "Study of new methods for the characterisation and the preservation of diatom cultures". Master, 2011. http://hdl.handle.net/1822/20267.

Other

Other output
  1. Fungal community ecology using MALDI-TOF MS demands curated mass spectral databases. Authors thank professors Marc-André Lachance and GregThorn for critical reading on initial drafts of this piece. Mariana Cereia, English teacher, kindly proofread the ¿nal version. Authors also thank Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP), Conselho de Desenvolvimento Cientí¿co e Tecnológico (CNPq) and National System for Research on Biodiversity (Sisbiota-Brazil, CNPq 563260. 2019. Sanitá-Lima, Matheus; Lucas, Rosymar Coutinho de; Lima, Nelson; Polizeli, Maria de Lourdes T.; Santos, Cledir. http://hdl.handle.net/1822/59451.
    10.3389/fmicb.2019.00315