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Biologist and researcher in the field of Systems Biology. Holds a Bachelor of Science degree in Biology (branch of Molecular Biology and Genetics, with a minor in Informatics) from the Faculty of Sciences of the University of Lisbon and a Master of Science degree in Biotechnology from the NOVA School of Science and Technology of NOVA University Lisbon. His scientific interests concern the usage of molecular and computational tools in the modelling of complex biological systems and the study of their relation with human health and heredity. Has research experience in the field of epigenetics and gene regulation, and metabolomics, and has collaborated with the private sector in the improvement of vaccine production through biochemical modelling and deep learning techniques.
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Identification

Personal identification

Full name
MÁRIO GIL POIARES RODRIGUES DE OLIVEIRA

Citation names

  • Gil P. Oliveira
  • Mário Gil Poiares Rodrigues de Oliveira
  • Poiares-Oliveira, Gil

Author identifiers

Ciência ID
D019-5596-42E2
ORCID iD
0000-0003-4638-2879
AuthenticusID
R-00K-EQM
Google Scholar ID
IvGHLzkAAAAJ
Researcher Id
AAE-9440-2021
Scopus Author Id
57932405100

Email addresses

  • gil.oliveira@tecnico.ulisboa.pt (Professional)
  • gpo@biodata.pt (Professional)

Telephones

Telephone
  • (+351) 213100318 (Professional)

Addresses

  • Room 401, INESC-ID, Rua Alves Redol, 9, 1000-029, Lisboa, Lisboa, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Molecular Biology
  • Natural sciences - Biological Sciences - Genetics and Heredity
  • Engineering and Technology - Industrial Biotechnology
  • Medical and Health Sciences - Medical Biotechnology
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Medical and Health Sciences - Medical Biotechnology - Gene-based Diagnostics and Therapeutic Interventions
  • Medical and Health Sciences - Basic Medicine - Human Genetics
  • Medical and Health Sciences - Medical Biotechnology - Technologies Involving the Manipulation of Cells, Tissues, Organs or the Whole Organism

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Spanish; Castilian Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1)
French Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
Education
Degree Classification
2019/09 - 2022/06/28
Concluded
 Biotecnologia (Mestrado)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
"Development of a novel hybrid genome-scale modelling method and showcase with HEK293 cell cultures" (THESIS/DISSERTATION)
 16
2016/09 - 2019/06/21
Concluded
 Biologia (Licenciatura)
Major in Biologia Molecular e Genética com Minor em Informática
Universidade de Lisboa Faculdade de Ciências, Portugal
 14
Affiliation

Science

Category
Host institution 		Employer
2025/03/18 - Current Contracted Researcher (Research) BioData.pt, Portugal
2023/06/05 - 2025/03/17 Contracted Researcher (Research) Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
BioData.pt, Portugal
2022/09/07 - 2023/03/31 Research Trainee (Research) Universidade de Lisboa Faculdade de Ciências, Portugal
Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
2021/01 - 2022/07/31 Researcher (Research) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
2020/08/25 - 2020/12 Research Trainee (Research) Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
Universidade de Lisboa Faculdade de Medicina, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2025/04/28 - 2025/06/27 Invited Assistant (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal

Positions / Appointments

Category
Host institution 		Employer
2023 - Current ELIXIR Portugal Deputy Node Coordinator BioData.pt, Portugal
BioData.pt, Portugal
(...)
2023 - Current ELIXIR Portugal Deputy Training Coordinator BioData.pt, Portugal
BioData.pt, Portugal
(...)

Others

Category
Host institution 		Employer
2017 - 2018/01 Project Management Department Member - Life Sciences Júnior Empresa Ciências, Portugal
Projects

Grant

Designation Funders
2021/10/01 - 2022/03/31 SILICOMEDIA - In silico culture or feed media design based on prior metabolic knowledge: Application to the Production phase of a mammalian cell line
LAQV/BI/006/2021
Research Fellow
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Universidade Nova de Lisboa Departamento de Química, Portugal
GlaxoSmithKline Biologicals SA
Concluded

Contract

Designation Funders
2025/05/01 - Current MALDIBANK - Multi-domain Open MALDI Spectra Archive for Identification of Microorganisms
101188201
Researcher
BioData.pt, Portugal
 European Commission
Ongoing
2024/09/10 - Current GLIM-BioData – Gateway for Living Data Management
RE-C05-i08
RI/00138/2024
Researcher
BioData.pt, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2024/02/01 - Current ELIXIR-STEERS
101131096
Researcher
BioData.pt, Portugal
 European Commission
Ongoing
2024/01/01 - Current ELIXIR Training Platform (24-TECH-Training)
2024-TECH-Training
Researcher
BioData.pt, Portugal
 ELIXIR
Ongoing
2024/01/01 - Current DATAREX - Data Management for Research in ELIXIR
2023-COMM-DATAREX
Researcher
BioData.pt, Portugal
 ELIXIR
Ongoing
2023/12 - Current ELIXIR Train-The-Trainer CoS
2024-PEOPLE-TtT
Researcher
BioData.pt, Portugal
 ELIXIR
Under evaluation
2024/01 - 2024/07 Building bridges to foster the ambition to reach the frontiers of science with global significance and impact: collaboration between the Office of Data Science Strategy (ODSS) at the US National Institutes of Health (NIH) and ELIXIR
ELIXIR Staff Exchange NIH/ODSS
Researcher
BioData.pt, Portugal
 ELIXIR
Concluded
Outputs

Publications

Conference poster
  1. Gil Poiares-Oliveira; Jorge dos Santos Oliveira; Peixoto, L.; Daniel Faria. "Ready for BioData Management?". 2025.
    10.5281/zenodo.15102389
  2. Gil Poiares-Oliveira. "BioData.pt Data Stewardship Wizard". 2024.
    10.5281/zenodo.14288138
  3. Gil Poiares-Oliveira. "DMPortal". 2024.
    10.5281/zenodo.14288023
  4. Estima, Cláudia; Marques, Madalena; Gil Poiares-Oliveira; Ana Espada de Sousa; Gama-Carvalho, Margarida. Corresponding author: Estima, Cláudia. "Dissecting the role of miR-34c-5p in Human CD4+ T cells". Paper presented in XLVIII Annual Meeting of the Portuguese Society for Immunology, 2023.
  5. Estima, Cláudia; Marques, Madalena; Gil Poiares-Oliveira; B. Farias, Guilherme; Ana E Sousa; Gama-Carvalho, Margarida. Corresponding author: Estima, Cláudia. "The impact of miR-34c-5p on the transcriptome of Human CD4+ T cells". Paper presented in RNA in Disease - IX ptRNA Meeting, 2023.
Journal article
  1. Ramos, João R. C.; Pinto, José; Gil Poiares-Oliveira; Peeters, Ludovic; Dumas, Patrick; Oliveira, Rui. Corresponding author: Oliveira, Rui. "Deep hybrid modeling of a HEK293 process: Combining long short-term memory networks with first principles equations". Biotechnology and Bioengineering (2024): http://dx.doi.org/10.1002/bit.28668.
    Open access • Published • 10.1002/bit.28668
  2. Ramos, João R. C.; Gil P. Oliveira; Dumas, Patrick; Oliveira, Rui. "Genome-scale modeling of Chinese hamster ovary cells by hybrid semi-parametric flux balance analysis". Bioprocess and Biosystems Engineering (2022): http://dx.doi.org/10.1007/s00449-022-02795-9.
    10.1007/s00449-022-02795-9
Online resource
  1. ELIXIR. Research Data Management Kit. A deliverable from the EU-funded ELIXIR-CONVERGE project (grant agreement 871075).. 2021. https://rdmkit.elixir-europe.org.
Thesis / Dissertation
  1. "Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale". Master, Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, 2022. https://hdl.handle.net/10362/142477.
Website
  1. Poiares-Oliveira, Gil. BioData.pt. 2024. https://biodata.pt.

Other

Dataset
  1. Ramos, João R. C.; Poiares-Oliveira, Gil; Dumas, Patrick; Oliveira, Rui. CHO hybrid semi-parametric flux balance analysis (HybridFBA) implementation code in MATLAB. ResearhGate. 2022.
    10.13140/RG.2.2.32550.64326
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2022/09/13 Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale GSK Vaccines Staff Meeting
GlaxoSmithKline Biologicals SA (Rixensart, Belgium)
2022/02 Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale Jornadas de Investigação do DQ e DCV
Departamentos de Química e Ciências da Vida da NOVA School of Science and Technology (Caparica, Portugal)

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2023/09/01 - 2023/12/27 Membro da Comissão Organizadora do 2nd Microbiome PT Summit (2023/10/26 - 2023/10/27)
Symposium (Member of the Organising Committee)
 BioData.pt, Portugal

Association member

Society Organization name Role
2017 - 2019/06 AEFCL - Associação dos Estudantes da Faculdade de Ciências de Lisboa Membro da Direção

Committee member

Activity description
Role 		Institution / Organization
2024/03 - Current Editorial Board Member - RDMkit
Member
 ELIXIR, United Kingdom
2019 - 2020 Membro Suplente - Comissão Pedagógica da Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa
Other
 Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2016 - 2019/09 Conselho Pedagógico da Licenciatura em Biologia - Departamentos de Biologia Animal e Biologia Vegetal da Faculdade de Ciências da Universidade de Lisboa
Member
 Universidade de Lisboa Faculdade de Ciências, Portugal
2016/09 - 2019/06 Comissão de Curso da Licenciatura em Biologia da Faculdade de Ciências da Universidade de Lisboa
Member
 Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019 Membro do Conselho de Escola - Faculdade de Ciências da Universidade de Lisboa
Member
 Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019 Comissão ad-hoc de Boas Práticas Pedagógicas - Faculdade de Ciências da Universidade de Lisboa
Member
 Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2018 Membro do Conselho Pedagógico - Faculdade de Ciências da Universidade de Lisboa
Member
 Universidade de Lisboa Faculdade de Ciências, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2025/04/28 - 2025/06/27 Bases de Dados (Databases) Ciências de Engenharia - Engenharia Informática e de Computadores (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2025/03/08 - 2025/03/08 All of the genes, none of the code (Workshop at XX ENEEB) (Outros)
2024/09/30 - 2024/10/01 Health Research Data Management Programa Doutoral do Centro Académico de Medicina de Lisboa (ramo de Medicina; ramo de Ciências Biomédicas; ramo de Ciências e Tecnologias da Saúde) (Doutoramento) BioData.pt, Portugal

Universidade de Lisboa Faculdade de Medicina, Portugal
2024/03/16 - 2024/03/16 Computational Tools and Resources for the Life Sciences (Workshop at ITQB NOVA) (Outros) Universidade do Minho Escola de Engenharia, Portugal
2024/02/24 - 2024/02/24 Computational Tools and Resources for Biomedicine (Workshop at XIX ENEEB) (Outros) Universidade de Lisboa Faculdade de Ciências, Portugal
2024/01/29 - 2024/01/30 Ready for BioData Management? Intensive Course at CCMAR BioData.pt, Portugal

Centro de Ciências do Mar, Portugal
Distinctions

Other distinction

2024 Membro Efetivo da Ordem dos Biólogos
Ordem dos Biólogos, Portugal
2019 Membro Graduado da Ordem dos Biólogos
Ordem dos Biólogos, Portugal